The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.
Total Genus |
125
|
sequence length |
432
|
structure length |
401
|
Chain Sequence |
AMKDVLAEYASRIVSAEEAVKHIKNGERVALSHAAGVPQSCVDALVQQADLFVEIYHMLCLGEGRADFIPVFFYEVPSMIRKDILHIDVAIVQLSMPDENGYCSFGVSCDYSKPAAESAHLVIGEINRQMPYVHGDNLIHISKLDYIVMADYPIYSLAKPKIGEVEEAIGRNCAELIEDGATLQLGIGAIPDAALLFLKDKKDLGIHTEMFSDGVVELVRSGVITGKKKTLHPGKMVATFLMGSEDVYHFIDKNPDVELYPVDYVNDPRVIAQNDNMVSINSCIEIDLMGQVVSECIGSKQFSGTGGQVDYVRGAAWSKNGKSIMAIPSTAKNGTASRIVPIIAEGAAVTTLRNEVDYVVTEYGIAQLKGKSLRQRAEALIAIAHPDFREELTKHLRKRFG
|
The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.
After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.
| publication title |
The structure of a putative 4-hydroxybutyrate CoA-transferase from Porphyromonas gingivalis W83
rcsb |
| molecule keywords |
4-hydroxybutyrate CoA-transferase
|
| molecule tags |
Transferase
|
| source organism |
Porphyromonas gingivalis
|
| total genus |
125
|
| structure length |
401
|
| sequence length |
432
|
| ec nomenclature | |
| pdb deposition date | 2008-09-11 |
| chain | Pfam Accession Code | Pfam Family Identifier | Pfam Description |
|---|---|---|---|
| A | PF02550 | AcetylCoA_hydro | Acetyl-CoA hydrolase/transferase N-terminal domain |
| A | PF13336 | AcetylCoA_hyd_C | Acetyl-CoA hydrolase/transferase C-terminal domain |
Image from the rcsb pdb (www.rcsb.org)
cath code
| Class | Architecture | Topology | Homology | Domain |
|---|---|---|---|---|---|
| Alpha Beta | 2-Layer Sandwich | Transcription Regulator spoIIAA | 4-hydroxybutyrate coenzyme like domains | ||
| Alpha Beta | 3-Layer(aba) Sandwich | Glutaconate Coenzyme A-transferase | Glutaconate Coenzyme A-transferase | ||
| Alpha Beta | 3-Layer(aba) Sandwich | Glutaconate Coenzyme A-transferase | Glutaconate Coenzyme A-transferase |
#chains in the Genus database with same CATH superfamily 2NRB A; 3QDQ A; 1OPE A; 2OAS A; 1POI A; 3K6M A; 4KGB A; 5DBN A; 2AHW A; 1OOY A; 3D3U A; 2HJ0 A; 3OXO A; 3RRL A; 1OOZ A; 1POI B; 3CDK A; 1XR4 A; 3GK7 A; 1M3E A; 5DBN B; 2NRC A; 3EH7 A; 3RRL B; 1K6D A; 3CDK B; 2AHU A; 3DLX A; 1O9L A; 2AHV A; #chains in the Genus database with same CATH topology 2NRB A; 3MGL A; 3QDQ A; 1OPE A; 2OAS A; 5DBN A; 4GHN A; 2RRL A; 1WXW A; 3F43 A; 1OOZ A; 2DXN A; 2DXL A; 1M3E A; 5DBN B; 1TH8 B; 1N6F A; 3DUP A; 1TIL B; 5EUX A; 1BUZ A; 4AEJ A; 4QTP A; 3GVK A; 1VC1 A; 5EZB A; 3VSE A; 3IH8 A; 3AGE A; 4HIZ A; 4DGH A; 3JU4 A; 1O9L A; 3LDF A; 3ZTB A; 3LLO A; 1J7X A; 3V97 A; 3LKL A; 2CWW A; 3K6M A; 4KGB A; 2B78 A; 3V8V A; 1AUZ A; 1OOY A; 3D3U A; 2HJ0 A; 1N6D A; 1H4X A; 1V0F A; 3K50 A; 3EH7 A; 5EUZ A; 3GMF A; 3MOG A; 1N6E A; 4HYL A; 3OIR A; 2ZOA A; 4DMG A; 3D03 A; 4JC0 A; 1BPL A; 3GHF A; 3C0K A; 3T6O A; 4L8K A; 1H4Y A; 1K32 A; 5EUS A; 2AHW A; 2AS0 A; 3OXO A; 1WXX A; 3RRL A; 1V0E A; 1XR4 A; 2NRC A; 5EUU A; 3IHB A; 3DOR A; 3RRL B; 1SBO A; 1K6D A; 2KLN A; 4L1C A; 1T6R A; 3IF5 A; 1FC6 A; 3IH9 A; 3AGD A; 1FC9 A; 3DLX A; 5EUW A; 2VY9 A; 3GVL A; 1POI A; 1FC7 A; 2KA5 A; 3NY7 A; 1POI B; 3CDK A; 3GK7 A; 3OIZ A; 4DGF A; 1TID B; 3ZXN A; 3CDK B; 1HF2 A; 3GVJ A; 1FCF A; 2AHU A; 2ZO9 B; 1THN B; 4XS5 A; 4AE2 A; 3DJA A; 1H4Z A; 3IHA A; 2AHV A; #chains in the Genus database with same CATH homology 2NRB A; 3QDQ A; 1OPE A; 2OAS A; 1POI A; 3K6M A; 4KGB A; 5DBN A; 2AHW A; 1OOY A; 3D3U A; 2HJ0 A; 3OXO A; 3RRL A; 1OOZ A; 1POI B; 3CDK A; 1XR4 A; 3GK7 A; 1M3E A; 5DBN B; 2NRC A; 3EH7 A; 3RRL B; 1K6D A; 3CDK B; 2AHU A; 3DLX A; 1O9L A; 2AHV A;
#similar chains in the Genus database (?% sequence similarity) ...loading similar chains, please wait... #similar chains, but unknotted ...loading similar chains, please wait... #similar chains in the pdb database (?% sequence similarity) ...loading similar chains, please wait...
