3EH7 | Genus

Total Genus 125

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	125
sequence length	432
structure length	401
Chain Sequence	AMKDVLAEYASRIVSAEEAVKHIKNGERVALSHAAGVPQSCVDALVQQADLFVEIYHMLCLGEGRADFIPVFFYEVPSMIRKDILHIDVAIVQLSMPDENGYCSFGVSCDYSKPAAESAHLVIGEINRQMPYVHGDNLIHISKLDYIVMADYPIYSLAKPKIGEVEEAIGRNCAELIEDGATLQLGIGAIPDAALLFLKDKKDLGIHTEMFSDGVVELVRSGVITGKKKTLHPGKMVATFLMGSEDVYHFIDKNPDVELYPVDYVNDPRVIAQNDNMVSINSCIEIDLMGQVVSECIGSKQFSGTGGQVDYVRGAAWSKNGKSIMAIPSTAKNGTASRIVPIIAEGAAVTTLRNEVDYVVTEYGIAQLKGKSLRQRAEALIAIAHPDFREELTKHLRKRFG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Transferase
source organism	Porphyromonas gingivalis
publication title	The structure of a putative 4-hydroxybutyrate CoA-transferase from Porphyromonas gingivalis W83 rcsb
molecule keywords	4-hydroxybutyrate CoA-transferase
total genus	125
structure length	401
sequence length	432
ec nomenclature
pdb deposition date	2008-09-11

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF02550	AcetylCoA_hydro	Acetyl-CoA hydrolase/transferase N-terminal domain
A	PF13336	AcetylCoA_hyd_C	Acetyl-CoA hydrolase/transferase C-terminal domain

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
3.30.750.70	Alpha Beta	2-Layer Sandwich	Transcription Regulator spoIIAA	4-hydroxybutyrate coenzyme like domains	3eh7A02
3.40.1080.10	Alpha Beta	3-Layer(aba) Sandwich	Glutaconate Coenzyme A-transferase	Glutaconate Coenzyme A-transferase	3eh7A01
3.40.1080.20	Alpha Beta	3-Layer(aba) Sandwich	Glutaconate Coenzyme A-transferase	Glutaconate Coenzyme A-transferase	3eh7A03

1M3EA 2AHVA 2NRBA 1O9LA 1K6DA 3RRLA 3GK7A 1OOYA 3CDKA 2AHUA 1XR4A 3RRLB 3OXOA 2HJ0A 2AHWA 3CDKB 4KGBA 2NRCA 1OOZA 2OASA 5DBNA 1POIA 3D3UA 3EH7A 3DLXA 3K6MA 1OPEA 3QDQA 5DBNB 1POIB
chains in the Genus database with same CATH superfamily

1M3EA 1AUZA 1FC7A 3LKLA 4XS5A 3NY7A 1K6DA 1BPLA 3RRLA 3CDKA 4DGHA 1XR4A 3RRLB 5EUUA 3CDKB 3MGLA 4GHNA 3DORA 2OASA 1WXWA 1H4YA 3IH8A 1N6DA 2DXLA 3ZXNA 1OPEA 1POIB 3F43A 2AHVA 3DUPA 2NRBA 3IH9A 2DXNA 5EUXA 3OIRA 1T6RA 1WXXA 2AHUA 1FC9A 3OXOA 3GVKA 4HIZA 5EUWA 3IF5A 3ZTBA 3GVLA 3D03A 5DBNA 3D3UA 2CWWA 1THNB 3GHFA 5EZBA 3DLXA 3GVJA 5DBNB 3V8VA 3LDFA 3AGDA 1FCFA 5EUZA 3GK7A 1OOYA 1TIDB 4HYLA 1VC1A 4QTPA 2B78A 3IHAA 2AHWA 2VY9A 4DGFA 2KA5A 1K32A 5EUSA 2NRCA 1OOZA 3K50A 3AGEA 1H4ZA 1J7XA 2ZOAA 2AS0A 3EH7A 3K6MA 3QDQA 2RRLA 3VSEA 1FC6A 4DMGA 3DJAA 3V97A 1O9LA 4AE2A 1BUZA 3JU4A 1HF2A 1V0FA 1V0EA 2KLNA 4JC0A 2ZO9B 2HJ0A 4L8KA 4KGBA 1SBOA 3OIZA 3IHBA 1N6EA 3C0KA 3LLOA 3T6OA 4L1CA 1N6FA 1POIA 1H4XA 3GMFA 1TH8B 3MOGA 1TILB 4AEJA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1M3E A;  2AHV A;  2NRB A;  1O9L A;  1K6D A;  3RRL A;  3GK7 A;  1OOY A;  3CDK A;  2AHU A;  1XR4 A;  3RRL B;  3OXO A;  2HJ0 A;  2AHW A;  3CDK B;  4KGB A;  2NRC A;  1OOZ A;  2OAS A;  5DBN A;  1POI A;  3D3U A;  3EH7 A;  3DLX A;  3K6M A;  1OPE A;  3QDQ A;  5DBN B;  1POI B; 
#chains in the Genus database with same CATH topology
 1M3E A;  1AUZ A;  1FC7 A;  3LKL A;  4XS5 A;  3NY7 A;  1K6D A;  1BPL A;  3RRL A;  3CDK A;  4DGH A;  1XR4 A;  3RRL B;  5EUU A;  3CDK B;  3MGL A;  4GHN A;  3DOR A;  2OAS A;  1WXW A;  1H4Y A;  3IH8 A;  1N6D A;  2DXL A;  3ZXN A;  1OPE A;  1POI B;  3F43 A;  2AHV A;  3DUP A;  2NRB A;  3IH9 A;  2DXN A;  5EUX A;  3OIR A;  1T6R A;  1WXX A;  2AHU A;  1FC9 A;  3OXO A;  3GVK A;  4HIZ A;  5EUW A;  3IF5 A;  3ZTB A;  3GVL A;  3D03 A;  5DBN A;  3D3U A;  2CWW A;  1THN B;  3GHF A;  5EZB A;  3DLX A;  3GVJ A;  5DBN B;  3V8V A;  3LDF A;  3AGD A;  1FCF A;  5EUZ A;  3GK7 A;  1OOY A;  1TID B;  4HYL A;  1VC1 A;  4QTP A;  2B78 A;  3IHA A;  2AHW A;  2VY9 A;  4DGF A;  2KA5 A;  1K32 A;  5EUS A;  2NRC A;  1OOZ A;  3K50 A;  3AGE A;  1H4Z A;  1J7X A;  2ZOA A;  2AS0 A;  3EH7 A;  3K6M A;  3QDQ A;  2RRL A;  3VSE A;  1FC6 A;  4DMG A;  3DJA A;  3V97 A;  1O9L A;  4AE2 A;  1BUZ A;  3JU4 A;  1HF2 A;  1V0F A;  1V0E A;  2KLN A;  4JC0 A;  2ZO9 B;  2HJ0 A;  4L8K A;  4KGB A;  1SBO A;  3OIZ A;  3IHB A;  1N6E A;  3C0K A;  3LLO A;  3T6O A;  4L1C A;  1N6F A;  1POI A;  1H4X A;  3GMF A;  1TH8 B;  3MOG A;  1TIL B;  4AEJ A; 
#chains in the Genus database with same CATH homology
 1M3E A;  2AHV A;  2NRB A;  1O9L A;  1K6D A;  3RRL A;  3GK7 A;  1OOY A;  3CDK A;  2AHU A;  1XR4 A;  3RRL B;  3OXO A;  2HJ0 A;  2AHW A;  3CDK B;  4KGB A;  2NRC A;  1OOZ A;  2OAS A;  5DBN A;  1POI A;  3D3U A;  3EH7 A;  3DLX A;  3K6M A;  1OPE A;  3QDQ A;  5DBN B;  1POI B;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3EH7A

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations