3EPY | Genus

Total Genus 30

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	30
sequence length	88
structure length	88
Chain Sequence	MALQADFDRAAEDVRKLKARPDDGELKELYGLYKQAIVGDINIACPGMLDLKGKAKWEAWNLKKGLSTEDATSAYISKAKELIEKYGI

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Lipid binding protein
source organism	Homo sapiens
publication title	Crystal Structure of human acyl-CoA binding domain 7 complexed with palmitoyl-Coa rcsb
molecule keywords	Acyl-CoA-binding domain-containing protein 7
total genus	30
structure length	88
sequence length	88
chains with identical sequence	B
ec nomenclature
pdb deposition date	2008-09-30

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00887	ACBP	Acyl CoA binding protein

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.20.80.10	Mainly Alpha	Up-down Bundle	Acyl-CoA Binding Protein	Acyl-CoA Binding Protein	3epyA00

1ACAA 2YVCA 1SGHA 3QIJA 1NVLA 1EF1A 2HRJA 4HDOA 1H4RA 1MIZB 3AU4A 4NY0A 2RQ1A 2J0KA 2I1KA 1MK7B 2EMSA 3BINA 2AL6A 2ABDA 1GC7A 2J0JA 3U8ZA 2D11A 2D2QA 2D10A 3FP5A 2EMTA 1MK9B 1ISNA 2ZPYA 1HBKA 2CQUA 1E5WA 4F7GA 2I1JA 2J0MA 3ZDTA 2FDQA 4ZRKA 4ZRIA 3X23A 4CYEA 5IJMA 1ST7A 1HB6A 2COPA 4P7IA 4DXAB 1J19A 1NI2A 3EPYA 3FLVA 3IVFA 3WA0A 2LBBA 2FJ9A 3AU5A 2AEHA 1GG3A 3G9WA 3PZDA 2CB8A 1Y19B 3PVLA 2WH5A 1MIXA 1GC6A 4HDQA 4YL8A 3U7DA 2HE7A 4EKUA 4ZRJA 1HB8A 1NTIA
chains in the Genus database with same CATH superfamily

4JKGA 1SGHA 4JKDA 1EF1A 2HRJA 4HDOA 1H4RA 1MIZB 3AU4A 2J0KA 2I1KA 2AL6A 2J0JA 2D10A 1DIKA 3FP5A 4JKHA 1MK9B 1ISNA 2DIKA 2CQUA 1E5WA 3X23A 1ST7A 1HB6A 2COPA 1J19A 3EPYA 1GG3A 3E9LA 3SBTA 3PZDA 2R82A 4HDQA 4JKAA 4YL8A 1NTIA 3E9OA 4JK8A 3QIJA 1NVLA 5JVLA 4NY0A 1GC7A 3U8ZA 2D11A 4JKGB 2EMTA 1HBKA 3E9PA 2I1JA 2J0MA 3SBGA 4ILHA 1VBGA 4DXAB 1NI2A 3WA0A 2LBBA 3G9WA 1VBHA 2WH5A 1MIXA 1GC6A 3U7DA 4JKBA 1GGOA 4ZRJA 1HB8A 2YVCA 2ABDA 4ILGB 2X0SA 4JK9A 3ZDTA 2FDQA 4CYEA 4ZRIA 3IVFA 4JK7A 3FLVA 2FJ9A 2AEHA 4JKEA 2CB8A 1Y19B 3PVLA 4EKUA 3E66A 4ILJA 1ACAA 2RQ1A 1KC7A 1MK7B 2EMSA 3BINA 2D2QA 4JKCA 2ZPYA 4F7GA 1KBLA 4GXBA 4ZRKA 5IJMA 4JKFA 4P7IA 3AU5A 1JDEA 3ENBA 4TKNA 2HE7A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1ACA A;  2YVC A;  1SGH A;  3QIJ A;  1NVL A;  1EF1 A;  2HRJ A;  4HDO A;  1H4R A;  1MIZ B;  3AU4 A;  4NY0 A;  2RQ1 A;  2J0K A;  2I1K A;  1MK7 B;  2EMS A;  3BIN A;  2AL6 A;  2ABD A;  1GC7 A;  2J0J A;  3U8Z A;  2D11 A;  2D2Q A;  2D10 A;  3FP5 A;  2EMT A;  1MK9 B;  1ISN A;  2ZPY A;  1HBK A;  2CQU A;  1E5W A;  4F7G A;  2I1J A;  2J0M A;  3ZDT A;  2FDQ A;  4ZRK A;  4ZRI A;  3X23 A;  4CYE A;  5IJM A;  1ST7 A;  1HB6 A;  2COP A;  4P7I A;  4DXA B;  1J19 A;  1NI2 A;  3EPY A;  3FLV A;  3IVF A;  3WA0 A;  2LBB A;  2FJ9 A;  3AU5 A;  2AEH A;  1GG3 A;  3G9W A;  3PZD A;  2CB8 A;  1Y19 B;  3PVL A;  2WH5 A;  1MIX A;  1GC6 A;  4HDQ A;  4YL8 A;  3U7D A;  2HE7 A;  4EKU A;  4ZRJ A;  1HB8 A;  1NTI A; 
#chains in the Genus database with same CATH topology
 4JKG A;  1SGH A;  4JKD A;  1EF1 A;  2HRJ A;  4HDO A;  1H4R A;  1MIZ B;  3AU4 A;  2J0K A;  2I1K A;  2AL6 A;  2J0J A;  2D10 A;  1DIK A;  3FP5 A;  4JKH A;  1MK9 B;  1ISN A;  2DIK A;  2CQU A;  1E5W A;  3X23 A;  1ST7 A;  1HB6 A;  2COP A;  1J19 A;  3EPY A;  1GG3 A;  3E9L A;  3SBT A;  3PZD A;  2R82 A;  4HDQ A;  4JKA A;  4YL8 A;  1NTI A;  3E9O A;  4JK8 A;  3QIJ A;  1NVL A;  5JVL A;  4NY0 A;  1GC7 A;  3U8Z A;  2D11 A;  4JKG B;  2EMT A;  1HBK A;  3E9P A;  2I1J A;  2J0M A;  3SBG A;  4ILH A;  1VBG A;  4DXA B;  1NI2 A;  3WA0 A;  2LBB A;  3G9W A;  1VBH A;  2WH5 A;  1MIX A;  1GC6 A;  3U7D A;  4JKB A;  1GGO A;  4ZRJ A;  1HB8 A;  2YVC A;  2ABD A;  4ILG B;  2X0S A;  4JK9 A;  3ZDT A;  2FDQ A;  4CYE A;  4ZRI A;  3IVF A;  4JK7 A;  3FLV A;  2FJ9 A;  2AEH A;  4JKE A;  2CB8 A;  1Y19 B;  3PVL A;  4EKU A;  3E66 A;  4ILJ A;  1ACA A;  2RQ1 A;  1KC7 A;  1MK7 B;  2EMS A;  3BIN A;  2D2Q A;  4JKC A;  2ZPY A;  4F7G A;  1KBL A;  4GXB A;  4ZRK A;  5IJM A;  4JKF A;  4P7I A;  3AU5 A;  1JDE A;  3ENB A;  4TKN A;  2HE7 A; 
#chains in the Genus database with same CATH homology
 4JKG A;  1SGH A;  4JKD A;  1EF1 A;  2HRJ A;  4HDO A;  1H4R A;  1MIZ B;  3AU4 A;  2J0K A;  2I1K A;  2AL6 A;  2J0J A;  2D10 A;  1DIK A;  3FP5 A;  4JKH A;  1MK9 B;  1ISN A;  2DIK A;  2CQU A;  1E5W A;  3X23 A;  1ST7 A;  1HB6 A;  2COP A;  1J19 A;  3EPY A;  1GG3 A;  3E9L A;  3SBT A;  3PZD A;  2R82 A;  4HDQ A;  4JKA A;  4YL8 A;  1NTI A;  3E9O A;  4JK8 A;  3QIJ A;  1NVL A;  5JVL A;  4NY0 A;  1GC7 A;  3U8Z A;  2D11 A;  4JKG B;  2EMT A;  1HBK A;  3E9P A;  2I1J A;  2J0M A;  3SBG A;  4ILH A;  1VBG A;  4DXA B;  1NI2 A;  3WA0 A;  2LBB A;  3G9W A;  1VBH A;  2WH5 A;  1MIX A;  1GC6 A;  3U7D A;  4JKB A;  1GGO A;  4ZRJ A;  1HB8 A;  2YVC A;  2ABD A;  4ILG B;  2X0S A;  4JK9 A;  3ZDT A;  2FDQ A;  4CYE A;  4ZRI A;  3IVF A;  4JK7 A;  3FLV A;  2FJ9 A;  2AEH A;  4JKE A;  2CB8 A;  1Y19 B;  3PVL A;  4EKU A;  3E66 A;  4ILJ A;  1ACA A;  2RQ1 A;  1KC7 A;  1MK7 B;  2EMS A;  3BIN A;  2D2Q A;  4JKC A;  2ZPY A;  4F7G A;  1KBL A;  4GXB A;  4ZRK A;  5IJM A;  4JKF A;  4P7I A;  3AU5 A;  1JDE A;  3ENB A;  4TKN A;  2HE7 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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3EPYA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations