3FLV | Genus

Total Genus 32

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	32
sequence length	92
structure length	92
Chain Sequence	SMHETRFEAAVKVIQSLPKNGSFQPTNEMMLKFYSFYKQATEGPCKLSRPGFWDPIGRYKWDAWSSLGDMTKEEAMIAYVEEMKKIIETMPM

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 92 atoms

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92 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Lipid binding protein
source organism	Homo sapiens
publication title	The crystal structure of human acyl-Coenzyme A binding domain containing 5 rcsb
molecule keywords	Acyl-CoA-binding domain-containing protein 5
total genus	32
structure length	92
sequence length	92
chains with identical sequence	B
ec nomenclature
pdb deposition date	2008-12-19

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00887	ACBP	Acyl CoA binding protein

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.20.80.10	Mainly Alpha	Up-down Bundle	Acyl-CoA Binding Protein	Acyl-CoA Binding Protein	3flvA00

2J0MA 4F7GA 2I1KA 2FJ9A 1GG3A 2FDQA 1MIXA 2HRJA 1SGHA 4NY0A 4DXAB 3AU4A 1NI2A 1Y19B 5IJMA 2EMTA 4HDOA 4ZRKA 1GC7A 3PVLA 2D2QA 3EPYA 3X23A 1ACAA 1E5WA 3AU5A 3IVFA 4HDQA 2D10A 2I1JA 2COPA 2J0KA 3QIJA 4ZRIA 2CB8A 1NTIA 1H4RA 1ST7A 2HE7A 1ISNA 2AEHA 4EKUA 2CQUA 3G9WA 3WA0A 2WH5A 4ZRJA 2RQ1A 2ABDA 1EF1A 1HB6A 2YVCA 1MIZB 3ZDTA 2LBBA 1MK9B 2EMSA 1GC6A 3FP5A 1MK7B 2D11A 3PZDA 2AL6A 1HBKA 3U7DA 3U8ZA 2J0JA 4CYEA 3BINA 2ZPYA 4P7IA 1HB8A 1J19A 3FLVA 1NVLA 4YL8A
chains in the Genus database with same CATH superfamily

4F7GA 1SGHA 3AU4A 1Y19B 2X0SA 4GXBA 4HDOA 2D2QA 4JKGB 3AU5A 4TKNA 3QIJA 1KBLA 1ST7A 3WA0A 3E66A 4ILGB 1MIZB 3FP5A 1VBGA 2ZPYA 3FLVA 4JKFA 2I1KA 3SBGA 2HRJA 3E9PA 4ZRKA 4JK8A 1GC7A 3X23A 4JK7A 4HDQA 4ZRIA 2R82A 1ISNA 2DIKA 1EF1A 1HB6A 4JKGA 1MK9B 4JKCA 1HBKA 2J0JA 4P7IA 2J0MA 1MIXA 4JKEA 5IJMA 2EMTA 3E9OA 3PVLA 3EPYA 1ACAA 4ILJA 3ENBA 1E5WA 4JKDA 3IVFA 2D10A 4JKAA 2J0KA 1GGOA 3E9LA 1NTIA 1H4RA 4EKUA 2CQUA 3G9WA 1JDEA 2WH5A 2RQ1A 2YVCA 3ZDTA 2LBBA 2EMSA 3U7DA 3U8ZA 3BINA 1HB8A 1NVLA 4YL8A 4JKHA 2FJ9A 1GG3A 2FDQA 4DXAB 4NY0A 1NI2A 1DIKA 4JK9A 2I1JA 2COPA 2CB8A 2HE7A 4JKBA 2AEHA 4ZRJA 2ABDA 3SBTA 4ILHA 1GC6A 1MK7B 2D11A 3PZDA 2AL6A 4CYEA 5JVLA 1VBHA 1KC7A 1J19A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2J0M A;  4F7G A;  2I1K A;  2FJ9 A;  1GG3 A;  2FDQ A;  1MIX A;  2HRJ A;  1SGH A;  4NY0 A;  4DXA B;  3AU4 A;  1NI2 A;  1Y19 B;  5IJM A;  2EMT A;  4HDO A;  4ZRK A;  1GC7 A;  3PVL A;  2D2Q A;  3EPY A;  3X23 A;  1ACA A;  1E5W A;  3AU5 A;  3IVF A;  4HDQ A;  2D10 A;  2I1J A;  2COP A;  2J0K A;  3QIJ A;  4ZRI A;  2CB8 A;  1NTI A;  1H4R A;  1ST7 A;  2HE7 A;  1ISN A;  2AEH A;  4EKU A;  2CQU A;  3G9W A;  3WA0 A;  2WH5 A;  4ZRJ A;  2RQ1 A;  2ABD A;  1EF1 A;  1HB6 A;  2YVC A;  1MIZ B;  3ZDT A;  2LBB A;  1MK9 B;  2EMS A;  1GC6 A;  3FP5 A;  1MK7 B;  2D11 A;  3PZD A;  2AL6 A;  1HBK A;  3U7D A;  3U8Z A;  2J0J A;  4CYE A;  3BIN A;  2ZPY A;  4P7I A;  1HB8 A;  1J19 A;  3FLV A;  1NVL A;  4YL8 A; 
#chains in the Genus database with same CATH topology
 4F7G A;  1SGH A;  3AU4 A;  1Y19 B;  2X0S A;  4GXB A;  4HDO A;  2D2Q A;  4JKG B;  3AU5 A;  4TKN A;  3QIJ A;  1KBL A;  1ST7 A;  3WA0 A;  3E66 A;  4ILG B;  1MIZ B;  3FP5 A;  1VBG A;  2ZPY A;  3FLV A;  4JKF A;  2I1K A;  3SBG A;  2HRJ A;  3E9P A;  4ZRK A;  4JK8 A;  1GC7 A;  3X23 A;  4JK7 A;  4HDQ A;  4ZRI A;  2R82 A;  1ISN A;  2DIK A;  1EF1 A;  1HB6 A;  4JKG A;  1MK9 B;  4JKC A;  1HBK A;  2J0J A;  4P7I A;  2J0M A;  1MIX A;  4JKE A;  5IJM A;  2EMT A;  3E9O A;  3PVL A;  3EPY A;  1ACA A;  4ILJ A;  3ENB A;  1E5W A;  4JKD A;  3IVF A;  2D10 A;  4JKA A;  2J0K A;  1GGO A;  3E9L A;  1NTI A;  1H4R A;  4EKU A;  2CQU A;  3G9W A;  1JDE A;  2WH5 A;  2RQ1 A;  2YVC A;  3ZDT A;  2LBB A;  2EMS A;  3U7D A;  3U8Z A;  3BIN A;  1HB8 A;  1NVL A;  4YL8 A;  4JKH A;  2FJ9 A;  1GG3 A;  2FDQ A;  4DXA B;  4NY0 A;  1NI2 A;  1DIK A;  4JK9 A;  2I1J A;  2COP A;  2CB8 A;  2HE7 A;  4JKB A;  2AEH A;  4ZRJ A;  2ABD A;  3SBT A;  4ILH A;  1GC6 A;  1MK7 B;  2D11 A;  3PZD A;  2AL6 A;  4CYE A;  5JVL A;  1VBH A;  1KC7 A;  1J19 A; 
#chains in the Genus database with same CATH homology
 4F7G A;  1SGH A;  3AU4 A;  1Y19 B;  2X0S A;  4GXB A;  4HDO A;  2D2Q A;  4JKG B;  3AU5 A;  4TKN A;  3QIJ A;  1KBL A;  1ST7 A;  3WA0 A;  3E66 A;  4ILG B;  1MIZ B;  3FP5 A;  1VBG A;  2ZPY A;  3FLV A;  4JKF A;  2I1K A;  3SBG A;  2HRJ A;  3E9P A;  4ZRK A;  4JK8 A;  1GC7 A;  3X23 A;  4JK7 A;  4HDQ A;  4ZRI A;  2R82 A;  1ISN A;  2DIK A;  1EF1 A;  1HB6 A;  4JKG A;  1MK9 B;  4JKC A;  1HBK A;  2J0J A;  4P7I A;  2J0M A;  1MIX A;  4JKE A;  5IJM A;  2EMT A;  3E9O A;  3PVL A;  3EPY A;  1ACA A;  4ILJ A;  3ENB A;  1E5W A;  4JKD A;  3IVF A;  2D10 A;  4JKA A;  2J0K A;  1GGO A;  3E9L A;  1NTI A;  1H4R A;  4EKU A;  2CQU A;  3G9W A;  1JDE A;  2WH5 A;  2RQ1 A;  2YVC A;  3ZDT A;  2LBB A;  2EMS A;  3U7D A;  3U8Z A;  3BIN A;  1HB8 A;  1NVL A;  4YL8 A;  4JKH A;  2FJ9 A;  1GG3 A;  2FDQ A;  4DXA B;  4NY0 A;  1NI2 A;  1DIK A;  4JK9 A;  2I1J A;  2COP A;  2CB8 A;  2HE7 A;  4JKB A;  2AEH A;  4ZRJ A;  2ABD A;  3SBT A;  4ILH A;  1GC6 A;  1MK7 B;  2D11 A;  3PZD A;  2AL6 A;  4CYE A;  5JVL A;  1VBH A;  1KC7 A;  1J19 A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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3FLVA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations