3GK7A

Crystal structure of 4-hydroxybutyrate coa-transferase from clostridium aminobutyricum
Total Genus 160
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
160
sequence length
447
structure length
447
Chain Sequence
MDWKKIYEDRTCTADEAVKSIKSGDRVLFAHCVAEPPVLVEAMVANAAAYKNVTVSHMVTLGKGEYSKPEYKENFTFEGWFTSPSTRGSIAEGHGQFVPVFFHEVPSLIRKDIFHVDVFMVMVSPPDHNGFCCVGVSSDYTMQAIKSAKIVLAEVNDQVPVVYGDTFVHVSEIDKFVETSHPLPEIGLPKIGEVEAAIGKHCASLIEDGSTLQLGIGAIPDAVLSQLKDKKHLGIHSEMISDGVVDLYEAGVIDCSQKSIDKGKMAITFLMGTKRLYDFAANNPKVELKPVDYINHPSVVAQCSKMVCINACLQVDFMGQIVSDSIGTKQFSGVGGQVDFVRGASMSIDGKGKAIIAMPSVAKKKDGSMISKIVPFIDHGAAVTTSRNDADYVVTEYGIAEMKGKSLQDRARALINIAHPDFKDELKAEFEKRFNAAFSAWSHPQFE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Crystal structure of 4-hydroxybutyrate CoA-transferase from Clostridium aminobutyricum
pubmed doi rcsb
molecule tags Transferase
source organism Clostridium aminobutyricum
molecule keywords 4-Hydroxybutyrate CoA-transferase
total genus 160
structure length 447
sequence length 447
chains with identical sequence B
ec nomenclature ec 2.8.3.-:
pdb deposition date 2009-03-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02550 AcetylCoA_hydro Acetyl-CoA hydrolase/transferase N-terminal domain
A PF13336 AcetylCoA_hyd_C Acetyl-CoA hydrolase/transferase C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.750.70 Alpha Beta 2-Layer Sandwich Transcription Regulator spoIIAA 4-hydroxybutyrate coenzyme like domains 3gk7A02
3.40.1080.10 Alpha Beta 3-Layer(aba) Sandwich Glutaconate Coenzyme A-transferase Glutaconate Coenzyme A-transferase 3gk7A01
3.40.1080.20 Alpha Beta 3-Layer(aba) Sandwich Glutaconate Coenzyme A-transferase Glutaconate Coenzyme A-transferase 3gk7A03
3RRLA 3RRLB 3D3UA 1O9LA 1XR4A 2HJ0A 3DLXA 1M3EA 2AHUA 3QDQA 1OPEA 2NRCA 1OOYA 1POIA 1POIB 3OXOA 1K6DA 2OASA 4KGBA 3K6MA 1OOZA 5DBNA 5DBNB 3EH7A 2NRBA 2AHWA 3GK7A 3CDKA 3CDKB 2AHVA
chains in the Genus database with same CATH superfamily
1FC6A 1FC7A 3MGLA 4HIZA 1TILB 3LKLA 3NY7A 3AGEA 3DLXA 3V97A 2NRCA 2RRLA 4AE2A 1K32A 5EUUA 3IH8A 3K6MA 2AHWA 1V0FA 1BUZA 1HF2A 2VY9A 2ZO9B 3K50A 5EUXA 3ZXNA 3GMFA 2AHVA 4QTPA 3D3UA 1TIDB 1O9LA 3D03A 1FC9A 1N6FA 1M3EA 3IHBA 3QDQA 2AS0A 1POIA 3C0KA 2OASA 1SBOA 5EUSA 1FCFA 2CWWA 3IF5A 4HYLA 4DGHA 5EZBA 5DBNA 2KLNA 3GVJA 1WXXA 2DXLA 1H4YA 3CDKB 1V0EA 4GHNA 5EUWA 3ZTBA 3GVLA 4L1CA 3RRLA 3OIRA 1XR4A 2HJ0A 2DXNA 2AHUA 1OPEA 1OOYA 1N6EA 1POIB 2KA5A 3LLOA 1VC1A 3GVKA 1K6DA 1T6RA 1WXWA 4L8KA 4KGBA 3LDFA 5DBNB 1H4XA 3F43A 4DGFA 1TH8B 3GK7A 1N6DA 2B78A 1BPLA 4DMGA 3IH9A 4XS5A 3RRLB 5EUZA 3DUPA 1THNB 3IHAA 3V8VA 3OIZA 3DJAA 3DORA 3AGDA 3GHFA 3OXOA 3VSEA 1H4ZA 4AEJA 1OOZA 3T6OA 3EH7A 2NRBA 3MOGA 1J7XA 3JU4A 4JC0A 1AUZA 3CDKA 2ZOAA
chains in the Genus database with same CATH topology
3RRLA 3RRLB 3D3UA 1O9LA 1XR4A 2HJ0A 3DLXA 1M3EA 2AHUA 3QDQA 1OPEA 2NRCA 1OOYA 1POIA 1POIB 3OXOA 1K6DA 2OASA 4KGBA 3K6MA 1OOZA 5DBNA 5DBNB 3EH7A 2NRBA 2AHWA 3GK7A 3CDKA 3CDKB 2AHVA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3RRL A;  3RRL B;  3D3U A;  1O9L A;  1XR4 A;  2HJ0 A;  3DLX A;  1M3E A;  2AHU A;  3QDQ A;  1OPE A;  2NRC A;  1OOY A;  1POI A;  1POI B;  3OXO A;  1K6D A;  2OAS A;  4KGB A;  3K6M A;  1OOZ A;  5DBN A;  5DBN B;  3EH7 A;  2NRB A;  2AHW A;  3GK7 A;  3CDK A;  3CDK B;  2AHV A; 
#chains in the Genus database with same CATH topology
 1FC6 A;  1FC7 A;  3MGL A;  4HIZ A;  1TIL B;  3LKL A;  3NY7 A;  3AGE A;  3DLX A;  3V97 A;  2NRC A;  2RRL A;  4AE2 A;  1K32 A;  5EUU A;  3IH8 A;  3K6M A;  2AHW A;  1V0F A;  1BUZ A;  1HF2 A;  2VY9 A;  2ZO9 B;  3K50 A;  5EUX A;  3ZXN A;  3GMF A;  2AHV A;  4QTP A;  3D3U A;  1TID B;  1O9L A;  3D03 A;  1FC9 A;  1N6F A;  1M3E A;  3IHB A;  3QDQ A;  2AS0 A;  1POI A;  3C0K A;  2OAS A;  1SBO A;  5EUS A;  1FCF A;  2CWW A;  3IF5 A;  4HYL A;  4DGH A;  5EZB A;  5DBN A;  2KLN A;  3GVJ A;  1WXX A;  2DXL A;  1H4Y A;  3CDK B;  1V0E A;  4GHN A;  5EUW A;  3ZTB A;  3GVL A;  4L1C A;  3RRL A;  3OIR A;  1XR4 A;  2HJ0 A;  2DXN A;  2AHU A;  1OPE A;  1OOY A;  1N6E A;  1POI B;  2KA5 A;  3LLO A;  1VC1 A;  3GVK A;  1K6D A;  1T6R A;  1WXW A;  4L8K A;  4KGB A;  3LDF A;  5DBN B;  1H4X A;  3F43 A;  4DGF A;  1TH8 B;  3GK7 A;  1N6D A;  2B78 A;  1BPL A;  4DMG A;  3IH9 A;  4XS5 A;  3RRL B;  5EUZ A;  3DUP A;  1THN B;  3IHA A;  3V8V A;  3OIZ A;  3DJA A;  3DOR A;  3AGD A;  3GHF A;  3OXO A;  3VSE A;  1H4Z A;  4AEJ A;  1OOZ A;  3T6O A;  3EH7 A;  2NRB A;  3MOG A;  1J7X A;  3JU4 A;  4JC0 A;  1AUZ A;  3CDK A;  2ZOA A; 
#chains in the Genus database with same CATH homology
 3RRL A;  3RRL B;  3D3U A;  1O9L A;  1XR4 A;  2HJ0 A;  3DLX A;  1M3E A;  2AHU A;  3QDQ A;  1OPE A;  2NRC A;  1OOY A;  1POI A;  1POI B;  3OXO A;  1K6D A;  2OAS A;  4KGB A;  3K6M A;  1OOZ A;  5DBN A;  5DBN B;  3EH7 A;  2NRB A;  2AHW A;  3GK7 A;  3CDK A;  3CDK B;  2AHV A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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