3GK7A

Crystal structure of 4-hydroxybutyrate coa-transferase from clostridium aminobutyricum
Total Genus 160
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
160
sequence length
447
structure length
447
Chain Sequence
MDWKKIYEDRTCTADEAVKSIKSGDRVLFAHCVAEPPVLVEAMVANAAAYKNVTVSHMVTLGKGEYSKPEYKENFTFEGWFTSPSTRGSIAEGHGQFVPVFFHEVPSLIRKDIFHVDVFMVMVSPPDHNGFCCVGVSSDYTMQAIKSAKIVLAEVNDQVPVVYGDTFVHVSEIDKFVETSHPLPEIGLPKIGEVEAAIGKHCASLIEDGSTLQLGIGAIPDAVLSQLKDKKHLGIHSEMISDGVVDLYEAGVIDCSQKSIDKGKMAITFLMGTKRLYDFAANNPKVELKPVDYINHPSVVAQCSKMVCINACLQVDFMGQIVSDSIGTKQFSGVGGQVDFVRGASMSIDGKGKAIIAMPSVAKKKDGSMISKIVPFIDHGAAVTTSRNDADYVVTEYGIAEMKGKSLQDRARALINIAHPDFKDELKAEFEKRFNAAFSAWSHPQFE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Crystal structure of 4-hydroxybutyrate CoA-transferase from Clostridium aminobutyricum
pubmed doi rcsb
molecule tags Transferase
source organism Clostridium aminobutyricum
molecule keywords 4-Hydroxybutyrate CoA-transferase
total genus 160
structure length 447
sequence length 447
chains with identical sequence B
ec nomenclature ec 2.8.3.-:
pdb deposition date 2009-03-10

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02550 AcetylCoA_hydro Acetyl-CoA hydrolase/transferase N-terminal domain
A PF13336 AcetylCoA_hyd_C Acetyl-CoA hydrolase/transferase C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.750.70 Alpha Beta 2-Layer Sandwich Transcription Regulator spoIIAA 4-hydroxybutyrate coenzyme like domains 3gk7A02
3.40.1080.10 Alpha Beta 3-Layer(aba) Sandwich Glutaconate Coenzyme A-transferase Glutaconate Coenzyme A-transferase 3gk7A01
3.40.1080.20 Alpha Beta 3-Layer(aba) Sandwich Glutaconate Coenzyme A-transferase Glutaconate Coenzyme A-transferase 3gk7A03
3OXOA 3D3UA 3K6MA 3RRLA 1OOZA 3GK7A 3DLXA 3CDKB 2HJ0A 1XR4A 1POIB 1OOYA 2AHUA 3CDKA 2AHWA 3EH7A 3QDQA 2AHVA 1POIA 5DBNB 2NRBA 4KGBA 2NRCA 1O9LA 1OPEA 5DBNA 3RRLB 1M3EA 2OASA 1K6DA
chains in the Genus database with same CATH superfamily
1VC1A 2B78A 2DXNA 4GHNA 1AUZA 3GK7A 4DGFA 1BUZA 3DUPA 2KLNA 1FC6A 1N6FA 1TIDB 3DORA 3GVLA 2ZO9B 3T6OA 4JC0A 3GVJA 1V0FA 3F43A 1FC7A 2AS0A 2NRCA 1J7XA 1H4XA 3IF5A 4XS5A 1K6DA 1H4YA 5EUXA 3LKLA 3RRLA 5EUUA 3IHBA 4DGHA 3GVKA 3MGLA 1K32A 1XR4A 1N6EA 1WXXA 3GHFA 3ZXNA 5EZBA 1HF2A 3LLOA 2CWWA 3IH8A 5EUSA 3VSEA 2AHWA 3CDKA 3LDFA 4QTPA 4AEJA 1POIA 2AHVA 1TILB 4KGBA 4L1CA 2KA5A 3V97A 3OIRA 3NY7A 3D3UA 3MOGA 4HIZA 1SBOA 3K6MA 1OOZA 3ZTBA 2RRLA 3C0KA 1H4ZA 3AGDA 5DBNB 1O9LA 3IH9A 1OPEA 3IHAA 3V8VA 3RRLB 1T6RA 1M3EA 1BPLA 3OXOA 3D03A 5EUZA 3JU4A 5EUWA 1N6DA 3DLXA 3CDKB 2HJ0A 1FC9A 2ZOAA 1V0EA 4DMGA 1POIB 1OOYA 2AHUA 3K50A 2VY9A 3AGEA 3GMFA 4AE2A 3EH7A 3QDQA 1WXWA 3OIZA 4L8KA 2NRBA 3DJAA 1THNB 4HYLA 5DBNA 1FCFA 2OASA 2DXLA 1TH8B
chains in the Genus database with same CATH topology
3OXOA 3D3UA 3K6MA 3RRLA 1OOZA 3GK7A 3DLXA 3CDKB 2HJ0A 1XR4A 1POIB 1OOYA 2AHUA 3CDKA 2AHWA 3EH7A 3QDQA 2AHVA 1POIA 5DBNB 2NRBA 4KGBA 2NRCA 1O9LA 1OPEA 5DBNA 3RRLB 1M3EA 2OASA 1K6DA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3OXO A;  3D3U A;  3K6M A;  3RRL A;  1OOZ A;  3GK7 A;  3DLX A;  3CDK B;  2HJ0 A;  1XR4 A;  1POI B;  1OOY A;  2AHU A;  3CDK A;  2AHW A;  3EH7 A;  3QDQ A;  2AHV A;  1POI A;  5DBN B;  2NRB A;  4KGB A;  2NRC A;  1O9L A;  1OPE A;  5DBN A;  3RRL B;  1M3E A;  2OAS A;  1K6D A; 
#chains in the Genus database with same CATH topology
 1VC1 A;  2B78 A;  2DXN A;  4GHN A;  1AUZ A;  3GK7 A;  4DGF A;  1BUZ A;  3DUP A;  2KLN A;  1FC6 A;  1N6F A;  1TID B;  3DOR A;  3GVL A;  2ZO9 B;  3T6O A;  4JC0 A;  3GVJ A;  1V0F A;  3F43 A;  1FC7 A;  2AS0 A;  2NRC A;  1J7X A;  1H4X A;  3IF5 A;  4XS5 A;  1K6D A;  1H4Y A;  5EUX A;  3LKL A;  3RRL A;  5EUU A;  3IHB A;  4DGH A;  3GVK A;  3MGL A;  1K32 A;  1XR4 A;  1N6E A;  1WXX A;  3GHF A;  3ZXN A;  5EZB A;  1HF2 A;  3LLO A;  2CWW A;  3IH8 A;  5EUS A;  3VSE A;  2AHW A;  3CDK A;  3LDF A;  4QTP A;  4AEJ A;  1POI A;  2AHV A;  1TIL B;  4KGB A;  4L1C A;  2KA5 A;  3V97 A;  3OIR A;  3NY7 A;  3D3U A;  3MOG A;  4HIZ A;  1SBO A;  3K6M A;  1OOZ A;  3ZTB A;  2RRL A;  3C0K A;  1H4Z A;  3AGD A;  5DBN B;  1O9L A;  3IH9 A;  1OPE A;  3IHA A;  3V8V A;  3RRL B;  1T6R A;  1M3E A;  1BPL A;  3OXO A;  3D03 A;  5EUZ A;  3JU4 A;  5EUW A;  1N6D A;  3DLX A;  3CDK B;  2HJ0 A;  1FC9 A;  2ZOA A;  1V0E A;  4DMG A;  1POI B;  1OOY A;  2AHU A;  3K50 A;  2VY9 A;  3AGE A;  3GMF A;  4AE2 A;  3EH7 A;  3QDQ A;  1WXW A;  3OIZ A;  4L8K A;  2NRB A;  3DJA A;  1THN B;  4HYL A;  5DBN A;  1FCF A;  2OAS A;  2DXL A;  1TH8 B; 
#chains in the Genus database with same CATH homology
 3OXO A;  3D3U A;  3K6M A;  3RRL A;  1OOZ A;  3GK7 A;  3DLX A;  3CDK B;  2HJ0 A;  1XR4 A;  1POI B;  1OOY A;  2AHU A;  3CDK A;  2AHW A;  3EH7 A;  3QDQ A;  2AHV A;  1POI A;  5DBN B;  2NRB A;  4KGB A;  2NRC A;  1O9L A;  1OPE A;  5DBN A;  3RRL B;  1M3E A;  2OAS A;  1K6D A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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