3QDQA

Complex between 4-hydroxybutyrate coa-transferase from clostridium aminobutyricum and coa
Total Genus 148
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
148
sequence length
447
structure length
447
Chain Sequence
MDWKKIYEDRTCTADEAVKSIKSGDRVLFAHCVAEPPVLVEAMVANAAAYKNVTVSHMVTLGKGEYSKPEYKENFTFEGWFTSPSTRGSIAEGHGQFVPVFFHEVPSLIRKDIFHVDVFMVMVSPPDHNGFCCVGVSSDYTMQAIKSAKIVLAEVNDQVPVVYGDTFVHVSEIDKFVETSHPLPEIGLPKIGEVEAAIGKHCASLIEDGSTLQLGIGAIPDAVLSQLKDKKHLGIHSEMISDGVVDLYEAGVIDCSQKSIDKGKMAITFLMGTKRLYDFAANNPKVELKPVDYINHPSVVAQCSKMVCINACLQVDFMGQIVSDSIGTKQFSGVGGQVDFVRGASMSIDGKGKAIIAMPSVAKKKDGSMISKIVPFIDHGAAVTTSRNDADYVVTEYGIAEMKGKSLQDRARALINIAHPDFKDELKAEFEKRFNAAFSAWSHPQFE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Crystal structure of the complex between 4-hydroxybutyrate CoA-transferase from Clostridium aminobutyricum and CoA.
pubmed doi rcsb
molecule tags Transferase
source organism Clostridium aminobutyricum
molecule keywords 4-Hydroxybutyrate CoA-transferase
total genus 148
structure length 447
sequence length 447
ec nomenclature ec 2.8.3.-:
pdb deposition date 2011-01-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02550 AcetylCoA_hydro Acetyl-CoA hydrolase/transferase N-terminal domain
A PF13336 AcetylCoA_hyd_C Acetyl-CoA hydrolase/transferase C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.750.70 Alpha Beta 2-Layer Sandwich Transcription Regulator spoIIAA 4-hydroxybutyrate coenzyme like domains 3qdqA02
3.40.1080.10 Alpha Beta 3-Layer(aba) Sandwich Glutaconate Coenzyme A-transferase Glutaconate Coenzyme A-transferase 3qdqA01
3.40.1080.20 Alpha Beta 3-Layer(aba) Sandwich Glutaconate Coenzyme A-transferase Glutaconate Coenzyme A-transferase 3qdqA03
3QDQA 2HJ0A 1M3EA 1K6DA 3CDKB 5DBNA 3RRLB 1POIA 3DLXA 2AHWA 1OPEA 3OXOA 5DBNB 3GK7A 1POIB 2NRBA 3EH7A 2OASA 2NRCA 3K6MA 3CDKA 1O9LA 1OOYA 1XR4A 3D3UA 2AHUA 4KGBA 2AHVA 3RRLA 1OOZA
chains in the Genus database with same CATH superfamily
3NY7A 3V97A 3GMFA 4L1CA 3CDKB 3AGEA 3MGLA 3IHAA 2B78A 3GVKA 2KA5A 3LLOA 1N6EA 1OPEA 2CWWA 3OIRA 5EUUA 1H4YA 1J7XA 3GK7A 1N6DA 1WXXA 1H4ZA 2ZO9B 1AUZA 1XR4A 3MOGA 5EUXA 3IF5A 3JU4A 2DXNA 1BUZA 2ZOAA 2HJ0A 1K6DA 1POIA 4DMGA 3DLXA 1FC7A 1K32A 1WXWA 1TIDB 3ZXNA 3OIZA 3F43A 2NRCA 5EUZA 1O9LA 4KGBA 4AEJA 4DGFA 3D03A 1FCFA 3ZTBA 5EUSA 4XS5A 5DBNA 4DGHA 3K50A 1V0EA 2AHWA 4HYLA 4L8KA 1TILB 3OXOA 2KLNA 1SBOA 5DBNB 1POIB 2NRBA 3DORA 1N6FA 2OASA 5EZBA 3V8VA 4GHNA 3K6MA 3GVJA 3CDKA 3D3UA 2AS0A 3GHFA 4AE2A 3RRLA 1OOZA 1FC6A 2DXLA 4HIZA 3QDQA 2VY9A 5EUWA 3C0KA 1TH8B 1M3EA 3IH9A 1THNB 3DJAA 3RRLB 1V0FA 4QTPA 3IHBA 1HF2A 1BPLA 3GVLA 1FC9A 1T6RA 3DUPA 3IH8A 3LDFA 1H4XA 3EH7A 4JC0A 3VSEA 3AGDA 3T6OA 1VC1A 1OOYA 2AHUA 2RRLA 2AHVA 3LKLA
chains in the Genus database with same CATH topology
3QDQA 2HJ0A 1M3EA 1K6DA 3CDKB 5DBNA 3RRLB 1POIA 3DLXA 2AHWA 1OPEA 3OXOA 5DBNB 3GK7A 1POIB 2NRBA 3EH7A 2OASA 2NRCA 3K6MA 3CDKA 1O9LA 1OOYA 1XR4A 3D3UA 2AHUA 4KGBA 2AHVA 3RRLA 1OOZA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3QDQ A;  2HJ0 A;  1M3E A;  1K6D A;  3CDK B;  5DBN A;  3RRL B;  1POI A;  3DLX A;  2AHW A;  1OPE A;  3OXO A;  5DBN B;  3GK7 A;  1POI B;  2NRB A;  3EH7 A;  2OAS A;  2NRC A;  3K6M A;  3CDK A;  1O9L A;  1OOY A;  1XR4 A;  3D3U A;  2AHU A;  4KGB A;  2AHV A;  3RRL A;  1OOZ A; 
#chains in the Genus database with same CATH topology
 3NY7 A;  3V97 A;  3GMF A;  4L1C A;  3CDK B;  3AGE A;  3MGL A;  3IHA A;  2B78 A;  3GVK A;  2KA5 A;  3LLO A;  1N6E A;  1OPE A;  2CWW A;  3OIR A;  5EUU A;  1H4Y A;  1J7X A;  3GK7 A;  1N6D A;  1WXX A;  1H4Z A;  2ZO9 B;  1AUZ A;  1XR4 A;  3MOG A;  5EUX A;  3IF5 A;  3JU4 A;  2DXN A;  1BUZ A;  2ZOA A;  2HJ0 A;  1K6D A;  1POI A;  4DMG A;  3DLX A;  1FC7 A;  1K32 A;  1WXW A;  1TID B;  3ZXN A;  3OIZ A;  3F43 A;  2NRC A;  5EUZ A;  1O9L A;  4KGB A;  4AEJ A;  4DGF A;  3D03 A;  1FCF A;  3ZTB A;  5EUS A;  4XS5 A;  5DBN A;  4DGH A;  3K50 A;  1V0E A;  2AHW A;  4HYL A;  4L8K A;  1TIL B;  3OXO A;  2KLN A;  1SBO A;  5DBN B;  1POI B;  2NRB A;  3DOR A;  1N6F A;  2OAS A;  5EZB A;  3V8V A;  4GHN A;  3K6M A;  3GVJ A;  3CDK A;  3D3U A;  2AS0 A;  3GHF A;  4AE2 A;  3RRL A;  1OOZ A;  1FC6 A;  2DXL A;  4HIZ A;  3QDQ A;  2VY9 A;  5EUW A;  3C0K A;  1TH8 B;  1M3E A;  3IH9 A;  1THN B;  3DJA A;  3RRL B;  1V0F A;  4QTP A;  3IHB A;  1HF2 A;  1BPL A;  3GVL A;  1FC9 A;  1T6R A;  3DUP A;  3IH8 A;  3LDF A;  1H4X A;  3EH7 A;  4JC0 A;  3VSE A;  3AGD A;  3T6O A;  1VC1 A;  1OOY A;  2AHU A;  2RRL A;  2AHV A;  3LKL A; 
#chains in the Genus database with same CATH homology
 3QDQ A;  2HJ0 A;  1M3E A;  1K6D A;  3CDK B;  5DBN A;  3RRL B;  1POI A;  3DLX A;  2AHW A;  1OPE A;  3OXO A;  5DBN B;  3GK7 A;  1POI B;  2NRB A;  3EH7 A;  2OAS A;  2NRC A;  3K6M A;  3CDK A;  1O9L A;  1OOY A;  1XR4 A;  3D3U A;  2AHU A;  4KGB A;  2AHV A;  3RRL A;  1OOZ A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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