3QDQA

Complex between 4-hydroxybutyrate coa-transferase from clostridium aminobutyricum and coa
Total Genus 148
50100150200250300350400020406080100120140
Genus TraceResidueGenus

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
148
sequence length
447
structure length
447
Chain Sequence
MDWKKIYEDRTCTADEAVKSIKSGDRVLFAHCVAEPPVLVEAMVANAAAYKNVTVSHMVTLGKGEYSKPEYKENFTFEGWFTSPSTRGSIAEGHGQFVPVFFHEVPSLIRKDIFHVDVFMVMVSPPDHNGFCCVGVSSDYTMQAIKSAKIVLAEVNDQVPVVYGDTFVHVSEIDKFVETSHPLPEIGLPKIGEVEAAIGKHCASLIEDGSTLQLGIGAIPDAVLSQLKDKKHLGIHSEMISDGVVDLYEAGVIDCSQKSIDKGKMAITFLMGTKRLYDFAANNPKVELKPVDYINHPSVVAQCSKMVCINACLQVDFMGQIVSDSIGTKQFSGVGGQVDFVRGASMSIDGKGKAIIAMPSVAKKKDGSMISKIVPFIDHGAAVTTSRNDADYVVTEYGIAEMKGKSLQDRARALINIAHPDFKDELKAEFEKRFNAAFSAWSHPQFE
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.


  Genus data interpretation
molecule tags Transferase
source organism Clostridium aminobutyricum
publication title Crystal structure of the complex between 4-hydroxybutyrate CoA-transferase from Clostridium aminobutyricum and CoA.
pubmed doi rcsb
molecule keywords 4-Hydroxybutyrate CoA-transferase
total genus 148
structure length 447
sequence length 447
ec nomenclature ec 2.8.3.-:
pdb deposition date 2011-01-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02550 AcetylCoA_hydro Acetyl-CoA hydrolase/transferase N-terminal domain
A PF13336 AcetylCoA_hyd_C Acetyl-CoA hydrolase/transferase C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.750.70 Alpha Beta 2-Layer Sandwich Transcription Regulator spoIIAA 4-hydroxybutyrate coenzyme like domains 3qdqA02
3.40.1080.10 Alpha Beta 3-Layer(aba) Sandwich Glutaconate Coenzyme A-transferase Glutaconate Coenzyme A-transferase 3qdqA01
3.40.1080.20 Alpha Beta 3-Layer(aba) Sandwich Glutaconate Coenzyme A-transferase Glutaconate Coenzyme A-transferase 3qdqA03
3CDKA 3DLXA 3GK7A 3D3UA 2HJ0A 1XR4A 2NRBA 3OXOA 1POIB 3QDQA 1M3EA 5DBNA 1OPEA 3K6MA 1O9LA 3RRLA 1OOZA 1K6DA 3CDKB 1OOYA 2OASA 2AHWA 1POIA 4KGBA 2AHUA 2AHVA 2NRCA 3EH7A 5DBNB 3RRLB
chains in the Genus database with same CATH superfamily
2B78A 1K32A 2NRBA 1TIDB 1TILB 3DUPA 3QDQA 1M3EA 4HYLA 1OOZA 1H4ZA 5EUWA 3IF5A 2OASA 4JC0A 1V0FA 3IHAA 4HIZA 4KGBA 2AHVA 3EH7A 1N6DA 2AS0A 3GK7A 1AUZA 2KA5A 1WXWA 4DGHA 2HJ0A 3DORA 2KLNA 3OIZA 3VSEA 3IH9A 1N6EA 1FC7A 3T6OA 1TH8B 1OPEA 3V97A 1H4XA 1K6DA 3GMFA 2CWWA 4DMGA 3NY7A 1THNB 2NRCA 3DJAA 1VC1A 2ZOAA 4GHNA 3F43A 3ZXNA 3JU4A 3D3UA 1H4YA 1XR4A 5EUZA 3C0KA 2RRLA 1WXXA 3MOGA 3OXOA 3GVLA 1BPLA 3IHBA 3LLOA 4AEJA 1FCFA 5EZBA 3K6MA 3IH8A 1FC6A 1N6FA 3OIRA 1OOYA 1BUZA 3AGEA 2ZO9B 4DGFA 4AE2A 3GVJA 3RRLB 3CDKA 3DLXA 1J7XA 2VY9A 4L8KA 1V0EA 1POIB 3K50A 3AGDA 3GHFA 2DXLA 5DBNA 3GVKA 5EUSA 1SBOA 4QTPA 1O9LA 3RRLA 1HF2A 3MGLA 3D03A 4L1CA 3LDFA 3CDKB 3ZTBA 2DXNA 2AHWA 3LKLA 4XS5A 5EUUA 1POIA 5EUXA 2AHUA 3V8VA 5DBNB 1FC9A 1T6RA
chains in the Genus database with same CATH topology
3CDKA 3DLXA 3GK7A 3D3UA 2HJ0A 1XR4A 2NRBA 3OXOA 1POIB 3QDQA 1M3EA 5DBNA 1OPEA 3K6MA 1O9LA 3RRLA 1OOZA 1K6DA 3CDKB 1OOYA 2OASA 2AHWA 1POIA 4KGBA 2AHUA 2AHVA 2NRCA 3EH7A 5DBNB 3RRLB
chains in the Genus database with same CATH homology

  
#chains in the Genus database with same CATH superfamily
 3CDK A;  3DLX A;  3GK7 A;  3D3U A;  2HJ0 A;  1XR4 A;  2NRB A;  3OXO A;  1POI B;  3QDQ A;  1M3E A;  5DBN A;  1OPE A;  3K6M A;  1O9L A;  3RRL A;  1OOZ A;  1K6D A;  3CDK B;  1OOY A;  2OAS A;  2AHW A;  1POI A;  4KGB A;  2AHU A;  2AHV A;  2NRC A;  3EH7 A;  5DBN B;  3RRL B; 
#chains in the Genus database with same CATH topology
 2B78 A;  1K32 A;  2NRB A;  1TID B;  1TIL B;  3DUP A;  3QDQ A;  1M3E A;  4HYL A;  1OOZ A;  1H4Z A;  5EUW A;  3IF5 A;  2OAS A;  4JC0 A;  1V0F A;  3IHA A;  4HIZ A;  4KGB A;  2AHV A;  3EH7 A;  1N6D A;  2AS0 A;  3GK7 A;  1AUZ A;  2KA5 A;  1WXW A;  4DGH A;  2HJ0 A;  3DOR A;  2KLN A;  3OIZ A;  3VSE A;  3IH9 A;  1N6E A;  1FC7 A;  3T6O A;  1TH8 B;  1OPE A;  3V97 A;  1H4X A;  1K6D A;  3GMF A;  2CWW A;  4DMG A;  3NY7 A;  1THN B;  2NRC A;  3DJA A;  1VC1 A;  2ZOA A;  4GHN A;  3F43 A;  3ZXN A;  3JU4 A;  3D3U A;  1H4Y A;  1XR4 A;  5EUZ A;  3C0K A;  2RRL A;  1WXX A;  3MOG A;  3OXO A;  3GVL A;  1BPL A;  3IHB A;  3LLO A;  4AEJ A;  1FCF A;  5EZB A;  3K6M A;  3IH8 A;  1FC6 A;  1N6F A;  3OIR A;  1OOY A;  1BUZ A;  3AGE A;  2ZO9 B;  4DGF A;  4AE2 A;  3GVJ A;  3RRL B;  3CDK A;  3DLX A;  1J7X A;  2VY9 A;  4L8K A;  1V0E A;  1POI B;  3K50 A;  3AGD A;  3GHF A;  2DXL A;  5DBN A;  3GVK A;  5EUS A;  1SBO A;  4QTP A;  1O9L A;  3RRL A;  1HF2 A;  3MGL A;  3D03 A;  4L1C A;  3LDF A;  3CDK B;  3ZTB A;  2DXN A;  2AHW A;  3LKL A;  4XS5 A;  5EUU A;  1POI A;  5EUX A;  2AHU A;  3V8V A;  5DBN B;  1FC9 A;  1T6R A; 
#chains in the Genus database with same CATH homology
 3CDK A;  3DLX A;  3GK7 A;  3D3U A;  2HJ0 A;  1XR4 A;  2NRB A;  3OXO A;  1POI B;  3QDQ A;  1M3E A;  5DBN A;  1OPE A;  3K6M A;  1O9L A;  3RRL A;  1OOZ A;  1K6D A;  3CDK B;  1OOY A;  2OAS A;  2AHW A;  1POI A;  4KGB A;  2AHU A;  2AHV A;  2NRC A;  3EH7 A;  5DBN B;  3RRL B;
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

  
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...
How to cite
Application loaded.