3QDQA

Complex between 4-hydroxybutyrate coa-transferase from clostridium aminobutyricum and coa
Total Genus 148
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
148
sequence length
447
structure length
447
Chain Sequence
MDWKKIYEDRTCTADEAVKSIKSGDRVLFAHCVAEPPVLVEAMVANAAAYKNVTVSHMVTLGKGEYSKPEYKENFTFEGWFTSPSTRGSIAEGHGQFVPVFFHEVPSLIRKDIFHVDVFMVMVSPPDHNGFCCVGVSSDYTMQAIKSAKIVLAEVNDQVPVVYGDTFVHVSEIDKFVETSHPLPEIGLPKIGEVEAAIGKHCASLIEDGSTLQLGIGAIPDAVLSQLKDKKHLGIHSEMISDGVVDLYEAGVIDCSQKSIDKGKMAITFLMGTKRLYDFAANNPKVELKPVDYINHPSVVAQCSKMVCINACLQVDFMGQIVSDSIGTKQFSGVGGQVDFVRGASMSIDGKGKAIIAMPSVAKKKDGSMISKIVPFIDHGAAVTTSRNDADYVVTEYGIAEMKGKSLQDRARALINIAHPDFKDELKAEFEKRFNAAFSAWSHPQFE
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

publication title Crystal structure of the complex between 4-hydroxybutyrate CoA-transferase from Clostridium aminobutyricum and CoA.
pubmed doi rcsb
molecule tags Transferase
source organism Clostridium aminobutyricum
molecule keywords 4-Hydroxybutyrate CoA-transferase
total genus 148
structure length 447
sequence length 447
ec nomenclature ec 2.8.3.-:
pdb deposition date 2011-01-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF02550 AcetylCoA_hydro Acetyl-CoA hydrolase/transferase N-terminal domain
A PF13336 AcetylCoA_hyd_C Acetyl-CoA hydrolase/transferase C-terminal domain
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
3.30.750.70 Alpha Beta 2-Layer Sandwich Transcription Regulator spoIIAA 4-hydroxybutyrate coenzyme like domains 3qdqA02
3.40.1080.10 Alpha Beta 3-Layer(aba) Sandwich Glutaconate Coenzyme A-transferase Glutaconate Coenzyme A-transferase 3qdqA01
3.40.1080.20 Alpha Beta 3-Layer(aba) Sandwich Glutaconate Coenzyme A-transferase Glutaconate Coenzyme A-transferase 3qdqA03
1POIB 1K6DA 3RRLB 2HJ0A 1POIA 3QDQA 5DBNB 3RRLA 3EH7A 1OPEA 2AHUA 5DBNA 2NRCA 2NRBA 1M3EA 2OASA 1XR4A 4KGBA 1OOYA 3CDKB 2AHVA 1O9LA 1OOZA 3CDKA 3GK7A 2AHWA 3K6MA 3D3UA 3OXOA 3DLXA
chains in the Genus database with same CATH superfamily
2ZO9B 3OIRA 3GVJA 3D03A 3LLOA 5DBNB 5EUXA 2B78A 1FC6A 3VSEA 5EUZA 3K50A 1THNB 1BPLA 1J7XA 3IF5A 2VY9A 3OIZA 1FC7A 5EUWA 4GHNA 3CDKB 2KLNA 2AHVA 2DXNA 1T6RA 3ZXNA 3MGLA 3AGDA 5EUSA 5EZBA 3GK7A 2AHWA 3OXOA 1FCFA 3JU4A 4XS5A 1POIB 3NY7A 1K6DA 3GHFA 3QDQA 4L1CA 3DJAA 1TILB 3C0KA 3V97A 1H4ZA 1SBOA 5DBNA 3GMFA 2NRBA 3LDFA 1N6FA 4L8KA 1M3EA 2OASA 1VC1A 1XR4A 1V0FA 4AE2A 4KGBA 1AUZA 1BUZA 3T6OA 1V0EA 1H4XA 3AGEA 3DUPA 2DXLA 1OOZA 3D3UA 3IH9A 3LKLA 3RRLB 2HJ0A 1POIA 1FC9A 2ZOAA 1OPEA 1WXXA 3IH8A 1N6DA 3GVLA 1WXWA 2AS0A 1OOYA 4AEJA 4HIZA 3MOGA 2RRLA 1O9LA 3IHAA 3CDKA 3K6MA 3DLXA 3DORA 3GVKA 1HF2A 4DMGA 3F43A 4HYLA 1K32A 3RRLA 3EH7A 4DGFA 1H4YA 4DGHA 2AHUA 2NRCA 1TH8B 1TIDB 2CWWA 5EUUA 3IHBA 4QTPA 2KA5A 3ZTBA 1N6EA 3V8VA 4JC0A
chains in the Genus database with same CATH topology
1POIB 1K6DA 3RRLB 2HJ0A 1POIA 3QDQA 5DBNB 3RRLA 3EH7A 1OPEA 2AHUA 5DBNA 2NRCA 2NRBA 1M3EA 2OASA 1XR4A 4KGBA 1OOYA 3CDKB 2AHVA 1O9LA 1OOZA 3CDKA 3GK7A 2AHWA 3K6MA 3D3UA 3OXOA 3DLXA
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1POI B;  1K6D A;  3RRL B;  2HJ0 A;  1POI A;  3QDQ A;  5DBN B;  3RRL A;  3EH7 A;  1OPE A;  2AHU A;  5DBN A;  2NRC A;  2NRB A;  1M3E A;  2OAS A;  1XR4 A;  4KGB A;  1OOY A;  3CDK B;  2AHV A;  1O9L A;  1OOZ A;  3CDK A;  3GK7 A;  2AHW A;  3K6M A;  3D3U A;  3OXO A;  3DLX A; 
#chains in the Genus database with same CATH topology
 2ZO9 B;  3OIR A;  3GVJ A;  3D03 A;  3LLO A;  5DBN B;  5EUX A;  2B78 A;  1FC6 A;  3VSE A;  5EUZ A;  3K50 A;  1THN B;  1BPL A;  1J7X A;  3IF5 A;  2VY9 A;  3OIZ A;  1FC7 A;  5EUW A;  4GHN A;  3CDK B;  2KLN A;  2AHV A;  2DXN A;  1T6R A;  3ZXN A;  3MGL A;  3AGD A;  5EUS A;  5EZB A;  3GK7 A;  2AHW A;  3OXO A;  1FCF A;  3JU4 A;  4XS5 A;  1POI B;  3NY7 A;  1K6D A;  3GHF A;  3QDQ A;  4L1C A;  3DJA A;  1TIL B;  3C0K A;  3V97 A;  1H4Z A;  1SBO A;  5DBN A;  3GMF A;  2NRB A;  3LDF A;  1N6F A;  4L8K A;  1M3E A;  2OAS A;  1VC1 A;  1XR4 A;  1V0F A;  4AE2 A;  4KGB A;  1AUZ A;  1BUZ A;  3T6O A;  1V0E A;  1H4X A;  3AGE A;  3DUP A;  2DXL A;  1OOZ A;  3D3U A;  3IH9 A;  3LKL A;  3RRL B;  2HJ0 A;  1POI A;  1FC9 A;  2ZOA A;  1OPE A;  1WXX A;  3IH8 A;  1N6D A;  3GVL A;  1WXW A;  2AS0 A;  1OOY A;  4AEJ A;  4HIZ A;  3MOG A;  2RRL A;  1O9L A;  3IHA A;  3CDK A;  3K6M A;  3DLX A;  3DOR A;  3GVK A;  1HF2 A;  4DMG A;  3F43 A;  4HYL A;  1K32 A;  3RRL A;  3EH7 A;  4DGF A;  1H4Y A;  4DGH A;  2AHU A;  2NRC A;  1TH8 B;  1TID B;  2CWW A;  5EUU A;  3IHB A;  4QTP A;  2KA5 A;  3ZTB A;  1N6E A;  3V8V A;  4JC0 A; 
#chains in the Genus database with same CATH homology
 1POI B;  1K6D A;  3RRL B;  2HJ0 A;  1POI A;  3QDQ A;  5DBN B;  3RRL A;  3EH7 A;  1OPE A;  2AHU A;  5DBN A;  2NRC A;  2NRB A;  1M3E A;  2OAS A;  1XR4 A;  4KGB A;  1OOY A;  3CDK B;  2AHV A;  1O9L A;  1OOZ A;  3CDK A;  3GK7 A;  2AHW A;  3K6M A;  3D3U A;  3OXO A;  3DLX A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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