5IJM | Genus

Total Genus 33

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	33
sequence length	98
structure length	98
Chain Sequence	SHMSAADFEAAVAYVRSLPKEGPVQLDNAAKLQFYSLYKQATEGDVTGSQPWAVQVEARAKWDAWNSCKGMKSEDAKAAYVRRLLTLLRSQGIQWKPG

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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The Resolver thinks Pdb

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reading 98 atoms

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98 atoms created

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Lipid binding protein
source organism	Leishmania major
publication title	Crystal Structure of an Acyl-CoA Binding Protein (LmjF.17.0620) of Leishmania major rcsb
molecule keywords	Uncharacterized protein
total genus	33
structure length	98
sequence length	98
ec nomenclature
pdb deposition date	2016-03-02

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
A	PF00887	ACBP	Acyl CoA binding protein

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
1.20.80.10	Mainly Alpha	Up-down Bundle	Acyl-CoA Binding Protein	Acyl-CoA Binding Protein	5ijmA00

4ZRIA 3U7DA 2D10A 2HE7A 4EKUA 2WH5A 1NI2A 1HB8A 1ISNA 4P7IA 5IJMA 1MK9B 1E5WA 1GC6A 2EMTA 2J0MA 3WA0A 4HDQA 4NY0A 1ACAA 3ZDTA 2HRJA 3QIJA 1GG3A 1HB6A 1H4RA 2D11A 3PZDA 2AL6A 2YVCA 3U8ZA 2FDQA 2AEHA 2COPA 4HDOA 3AU5A 1MK7B 1MIXA 3BINA 3IVFA 2FJ9A 1SGHA 2J0JA 3AU4A 3G9WA 4DXAB 1NVLA 4F7GA 2ZPYA 1MIZB 2I1KA 1Y19B 1NTIA 2I1JA 3EPYA 3X23A 4YL8A 2LBBA 1EF1A 1ST7A 2CB8A 4ZRJA 2CQUA 2RQ1A 1GC7A 2J0KA 4ZRKA 3PVLA 4CYEA 1HBKA 2ABDA 1J19A 2D2QA 3FP5A 3FLVA 2EMSA
chains in the Genus database with same CATH superfamily

1NI2A 1ISNA 5IJMA 1MK9B 1GC6A 2EMTA 1HB6A 4JK9A 2DIKA 2YVCA 3U8ZA 2FDQA 2AEHA 1MK7B 3BINA 2FJ9A 3G9WA 4F7GA 2ZPYA 2I1JA 4YL8A 1EF1A 4ZRJA 4JKFA 2CQUA 2RQ1A 1J19A 3FP5A 3X23A 3E66A 4ZRIA 2WH5A 4JKCA 2J0MA 1GGOA 4JKAA 4JKDA 2HRJA 1KBLA 2R82A 4HDOA 2COPA 3AU5A 3IVFA 3SBGA 2I1KA 4JKEA 3EPYA 4JKGA 1KC7A 4JKGB 4ZRKA 3PVLA 3SBTA 2D2QA 3FLVA 2EMSA 2D10A 4P7IA 1HB8A 1E5WA 4HDQA 4NY0A 3QIJA 4ILGB 4ILHA 1H4RA 2D11A 4JK7A 3PZDA 2X0SA 1MIXA 1SGHA 3E9LA 4JKHA 1NVLA 4TKNA 4ILJA 1GC7A 5JVLA 1HBKA 1VBHA 3U7DA 2HE7A 4EKUA 4JKBA 1ACAA 3WA0A 3ZDTA 4JK8A 1GG3A 4GXBA 2AL6A 3ENBA 3AU4A 2J0JA 4DXAB 1MIZB 1Y19B 1NTIA 3E9OA 2LBBA 1DIKA 1ST7A 2CB8A 1VBGA 2J0KA 4CYEA 2ABDA 1JDEA 3E9PA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4ZRI A;  3U7D A;  2D10 A;  2HE7 A;  4EKU A;  2WH5 A;  1NI2 A;  1HB8 A;  1ISN A;  4P7I A;  5IJM A;  1MK9 B;  1E5W A;  1GC6 A;  2EMT A;  2J0M A;  3WA0 A;  4HDQ A;  4NY0 A;  1ACA A;  3ZDT A;  2HRJ A;  3QIJ A;  1GG3 A;  1HB6 A;  1H4R A;  2D11 A;  3PZD A;  2AL6 A;  2YVC A;  3U8Z A;  2FDQ A;  2AEH A;  2COP A;  4HDO A;  3AU5 A;  1MK7 B;  1MIX A;  3BIN A;  3IVF A;  2FJ9 A;  1SGH A;  2J0J A;  3AU4 A;  3G9W A;  4DXA B;  1NVL A;  4F7G A;  2ZPY A;  1MIZ B;  2I1K A;  1Y19 B;  1NTI A;  2I1J A;  3EPY A;  3X23 A;  4YL8 A;  2LBB A;  1EF1 A;  1ST7 A;  2CB8 A;  4ZRJ A;  2CQU A;  2RQ1 A;  1GC7 A;  2J0K A;  4ZRK A;  3PVL A;  4CYE A;  1HBK A;  2ABD A;  1J19 A;  2D2Q A;  3FP5 A;  3FLV A;  2EMS A; 
#chains in the Genus database with same CATH topology
 1NI2 A;  1ISN A;  5IJM A;  1MK9 B;  1GC6 A;  2EMT A;  1HB6 A;  4JK9 A;  2DIK A;  2YVC A;  3U8Z A;  2FDQ A;  2AEH A;  1MK7 B;  3BIN A;  2FJ9 A;  3G9W A;  4F7G A;  2ZPY A;  2I1J A;  4YL8 A;  1EF1 A;  4ZRJ A;  4JKF A;  2CQU A;  2RQ1 A;  1J19 A;  3FP5 A;  3X23 A;  3E66 A;  4ZRI A;  2WH5 A;  4JKC A;  2J0M A;  1GGO A;  4JKA A;  4JKD A;  2HRJ A;  1KBL A;  2R82 A;  4HDO A;  2COP A;  3AU5 A;  3IVF A;  3SBG A;  2I1K A;  4JKE A;  3EPY A;  4JKG A;  1KC7 A;  4JKG B;  4ZRK A;  3PVL A;  3SBT A;  2D2Q A;  3FLV A;  2EMS A;  2D10 A;  4P7I A;  1HB8 A;  1E5W A;  4HDQ A;  4NY0 A;  3QIJ A;  4ILG B;  4ILH A;  1H4R A;  2D11 A;  4JK7 A;  3PZD A;  2X0S A;  1MIX A;  1SGH A;  3E9L A;  4JKH A;  1NVL A;  4TKN A;  4ILJ A;  1GC7 A;  5JVL A;  1HBK A;  1VBH A;  3U7D A;  2HE7 A;  4EKU A;  4JKB A;  1ACA A;  3WA0 A;  3ZDT A;  4JK8 A;  1GG3 A;  4GXB A;  2AL6 A;  3ENB A;  3AU4 A;  2J0J A;  4DXA B;  1MIZ B;  1Y19 B;  1NTI A;  3E9O A;  2LBB A;  1DIK A;  1ST7 A;  2CB8 A;  1VBG A;  2J0K A;  4CYE A;  2ABD A;  1JDE A;  3E9P A; 
#chains in the Genus database with same CATH homology
 1NI2 A;  1ISN A;  5IJM A;  1MK9 B;  1GC6 A;  2EMT A;  1HB6 A;  4JK9 A;  2DIK A;  2YVC A;  3U8Z A;  2FDQ A;  2AEH A;  1MK7 B;  3BIN A;  2FJ9 A;  3G9W A;  4F7G A;  2ZPY A;  2I1J A;  4YL8 A;  1EF1 A;  4ZRJ A;  4JKF A;  2CQU A;  2RQ1 A;  1J19 A;  3FP5 A;  3X23 A;  3E66 A;  4ZRI A;  2WH5 A;  4JKC A;  2J0M A;  1GGO A;  4JKA A;  4JKD A;  2HRJ A;  1KBL A;  2R82 A;  4HDO A;  2COP A;  3AU5 A;  3IVF A;  3SBG A;  2I1K A;  4JKE A;  3EPY A;  4JKG A;  1KC7 A;  4JKG B;  4ZRK A;  3PVL A;  3SBT A;  2D2Q A;  3FLV A;  2EMS A;  2D10 A;  4P7I A;  1HB8 A;  1E5W A;  4HDQ A;  4NY0 A;  3QIJ A;  4ILG B;  4ILH A;  1H4R A;  2D11 A;  4JK7 A;  3PZD A;  2X0S A;  1MIX A;  1SGH A;  3E9L A;  4JKH A;  1NVL A;  4TKN A;  4ILJ A;  1GC7 A;  5JVL A;  1HBK A;  1VBH A;  3U7D A;  2HE7 A;  4EKU A;  4JKB A;  1ACA A;  3WA0 A;  3ZDT A;  4JK8 A;  1GG3 A;  4GXB A;  2AL6 A;  3ENB A;  3AU4 A;  2J0J A;  4DXA B;  1MIZ B;  1Y19 B;  1NTI A;  3E9O A;  2LBB A;  1DIK A;  1ST7 A;  2CB8 A;  1VBG A;  2J0K A;  4CYE A;  2ABD A;  1JDE A;  3E9P A;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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5IJMA

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations