5IJMA

Crystal structure of an acyl-coa binding protein (lmjf.17.0620) of leishmania major
Total Genus 33
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
33
sequence length
98
structure length
98
Chain Sequence
SHMSAADFEAAVAYVRSLPKEGPVQLDNAAKLQFYSLYKQATEGDVTGSQPWAVQVEARAKWDAWNSCKGMKSEDAKAAYVRRLLTLLRSQGIQWKPG
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Crystal Structure of an Acyl-CoA Binding Protein (LmjF.17.0620) of Leishmania major
rcsb
molecule tags Lipid binding protein
source organism Leishmania major
molecule keywords Uncharacterized protein
total genus 33
structure length 98
sequence length 98
ec nomenclature
pdb deposition date 2016-03-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00887 ACBP Acyl CoA binding protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.80.10 Mainly Alpha Up-down Bundle Acyl-CoA Binding Protein Acyl-CoA Binding Protein 5ijmA00
2AEHA 3IVFA 4F7GA 1HBKA 2CB8A 2I1JA 1ACAA 2I1KA 2J0MA 2AL6A 3AU5A 1NTIA 4YL8A 2LBBA 4NY0A 2D2QA 2CQUA 2FJ9A 4ZRKA 1SGHA 1MIZB 4HDOA 2RQ1A 2HRJA 4ZRIA 1NVLA 1HB6A 1ISNA 1GG3A 4ZRJA 4HDQA 4P7IA 3ZDTA 2J0JA 1GC6A 2D10A 1H4RA 3U7DA 3WA0A 2ABDA 3PZDA 2WH5A 3QIJA 1J19A 4CYEA 2D11A 1MK9B 3BINA 2J0KA 2ZPYA 5IJMA 1MIXA 2HE7A 1E5WA 3FP5A 1Y19B 2EMSA 3G9WA 3PVLA 3EPYA 3U8ZA 1ST7A 1GC7A 2YVCA 3FLVA 4DXAB 4EKUA 2EMTA 3X23A 3AU4A 1HB8A 1NI2A 1EF1A 2FDQA 1MK7B 2COPA
chains in the Genus database with same CATH superfamily
2I1JA 2CB8A 4JKCA 1ACAA 4YL8A 4TKNA 1SGHA 4HDOA 1HB6A 1ISNA 4P7IA 4JK7A 3WA0A 3E9LA 1MIXA 1E5WA 4JK9A 3FP5A 1JDEA 1Y19B 3G9WA 4JKBA 1GC7A 3SBTA 4DXAB 5JVLA 2EMTA 1GGOA 1MK7B 3E9OA 3AU5A 4JK8A 2D2QA 2CQUA 2FJ9A 4ZRIA 1NVLA 1GG3A 4JKDA 3ZDTA 2DIKA 2J0JA 4JKGA 3PZDA 2X0SA 2WH5A 2D11A 1MK9B 2R82A 3BINA 5IJMA 1VBHA 3E9PA 3U8ZA 1ST7A 3FLVA 1NI2A 2FDQA 4JKGB 2AEHA 3IVFA 4F7GA 1HBKA 4ILGB 2I1KA 1NTIA 2LBBA 4NY0A 4JKHA 3ENBA 1KC7A 1MIZB 2RQ1A 4ILJA 4ZRJA 4HDQA 2D10A 3E66A 3U7DA 3QIJA 1J19A 2J0KA 3EPYA 3SBGA 2YVCA 1DIKA 4JKFA 3X23A 3AU4A 4JKAA 2COPA 2J0MA 2AL6A 4ZRKA 2HRJA 1GC6A 1H4RA 2ABDA 4JKEA 4CYEA 4GXBA 2ZPYA 2HE7A 2EMSA 3PVLA 4ILHA 1VBGA 4EKUA 1HB8A 1KBLA 1EF1A
chains in the Genus database with same CATH topology
2I1JA 2CB8A 4JKCA 1ACAA 4YL8A 4TKNA 1SGHA 4HDOA 1HB6A 1ISNA 4P7IA 4JK7A 3WA0A 3E9LA 1MIXA 1E5WA 4JK9A 3FP5A 1JDEA 1Y19B 3G9WA 4JKBA 1GC7A 3SBTA 4DXAB 5JVLA 2EMTA 1GGOA 1MK7B 3E9OA 3AU5A 4JK8A 2D2QA 2CQUA 2FJ9A 4ZRIA 1NVLA 1GG3A 4JKDA 3ZDTA 2DIKA 2J0JA 4JKGA 3PZDA 2X0SA 2WH5A 2D11A 1MK9B 2R82A 3BINA 5IJMA 1VBHA 3E9PA 3U8ZA 1ST7A 3FLVA 1NI2A 2FDQA 4JKGB 2AEHA 3IVFA 4F7GA 1HBKA 4ILGB 2I1KA 1NTIA 2LBBA 4NY0A 4JKHA 3ENBA 1KC7A 1MIZB 2RQ1A 4ILJA 4ZRJA 4HDQA 2D10A 3E66A 3U7DA 3QIJA 1J19A 2J0KA 3EPYA 3SBGA 2YVCA 1DIKA 4JKFA 3X23A 3AU4A 4JKAA 2COPA 2J0MA 2AL6A 4ZRKA 2HRJA 1GC6A 1H4RA 2ABDA 4JKEA 4CYEA 4GXBA 2ZPYA 2HE7A 2EMSA 3PVLA 4ILHA 1VBGA 4EKUA 1HB8A 1KBLA 1EF1A
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2AEH A;  3IVF A;  4F7G A;  1HBK A;  2CB8 A;  2I1J A;  1ACA A;  2I1K A;  2J0M A;  2AL6 A;  3AU5 A;  1NTI A;  4YL8 A;  2LBB A;  4NY0 A;  2D2Q A;  2CQU A;  2FJ9 A;  4ZRK A;  1SGH A;  1MIZ B;  4HDO A;  2RQ1 A;  2HRJ A;  4ZRI A;  1NVL A;  1HB6 A;  1ISN A;  1GG3 A;  4ZRJ A;  4HDQ A;  4P7I A;  3ZDT A;  2J0J A;  1GC6 A;  2D10 A;  1H4R A;  3U7D A;  3WA0 A;  2ABD A;  3PZD A;  2WH5 A;  3QIJ A;  1J19 A;  4CYE A;  2D11 A;  1MK9 B;  3BIN A;  2J0K A;  2ZPY A;  5IJM A;  1MIX A;  2HE7 A;  1E5W A;  3FP5 A;  1Y19 B;  2EMS A;  3G9W A;  3PVL A;  3EPY A;  3U8Z A;  1ST7 A;  1GC7 A;  2YVC A;  3FLV A;  4DXA B;  4EKU A;  2EMT A;  3X23 A;  3AU4 A;  1HB8 A;  1NI2 A;  1EF1 A;  2FDQ A;  1MK7 B;  2COP A; 
#chains in the Genus database with same CATH topology
 2I1J A;  2CB8 A;  4JKC A;  1ACA A;  4YL8 A;  4TKN A;  1SGH A;  4HDO A;  1HB6 A;  1ISN A;  4P7I A;  4JK7 A;  3WA0 A;  3E9L A;  1MIX A;  1E5W A;  4JK9 A;  3FP5 A;  1JDE A;  1Y19 B;  3G9W A;  4JKB A;  1GC7 A;  3SBT A;  4DXA B;  5JVL A;  2EMT A;  1GGO A;  1MK7 B;  3E9O A;  3AU5 A;  4JK8 A;  2D2Q A;  2CQU A;  2FJ9 A;  4ZRI A;  1NVL A;  1GG3 A;  4JKD A;  3ZDT A;  2DIK A;  2J0J A;  4JKG A;  3PZD A;  2X0S A;  2WH5 A;  2D11 A;  1MK9 B;  2R82 A;  3BIN A;  5IJM A;  1VBH A;  3E9P A;  3U8Z A;  1ST7 A;  3FLV A;  1NI2 A;  2FDQ A;  4JKG B;  2AEH A;  3IVF A;  4F7G A;  1HBK A;  4ILG B;  2I1K A;  1NTI A;  2LBB A;  4NY0 A;  4JKH A;  3ENB A;  1KC7 A;  1MIZ B;  2RQ1 A;  4ILJ A;  4ZRJ A;  4HDQ A;  2D10 A;  3E66 A;  3U7D A;  3QIJ A;  1J19 A;  2J0K A;  3EPY A;  3SBG A;  2YVC A;  1DIK A;  4JKF A;  3X23 A;  3AU4 A;  4JKA A;  2COP A;  2J0M A;  2AL6 A;  4ZRK A;  2HRJ A;  1GC6 A;  1H4R A;  2ABD A;  4JKE A;  4CYE A;  4GXB A;  2ZPY A;  2HE7 A;  2EMS A;  3PVL A;  4ILH A;  1VBG A;  4EKU A;  1HB8 A;  1KBL A;  1EF1 A; 
#chains in the Genus database with same CATH homology
 2I1J A;  2CB8 A;  4JKC A;  1ACA A;  4YL8 A;  4TKN A;  1SGH A;  4HDO A;  1HB6 A;  1ISN A;  4P7I A;  4JK7 A;  3WA0 A;  3E9L A;  1MIX A;  1E5W A;  4JK9 A;  3FP5 A;  1JDE A;  1Y19 B;  3G9W A;  4JKB A;  1GC7 A;  3SBT A;  4DXA B;  5JVL A;  2EMT A;  1GGO A;  1MK7 B;  3E9O A;  3AU5 A;  4JK8 A;  2D2Q A;  2CQU A;  2FJ9 A;  4ZRI A;  1NVL A;  1GG3 A;  4JKD A;  3ZDT A;  2DIK A;  2J0J A;  4JKG A;  3PZD A;  2X0S A;  2WH5 A;  2D11 A;  1MK9 B;  2R82 A;  3BIN A;  5IJM A;  1VBH A;  3E9P A;  3U8Z A;  1ST7 A;  3FLV A;  1NI2 A;  2FDQ A;  4JKG B;  2AEH A;  3IVF A;  4F7G A;  1HBK A;  4ILG B;  2I1K A;  1NTI A;  2LBB A;  4NY0 A;  4JKH A;  3ENB A;  1KC7 A;  1MIZ B;  2RQ1 A;  4ILJ A;  4ZRJ A;  4HDQ A;  2D10 A;  3E66 A;  3U7D A;  3QIJ A;  1J19 A;  2J0K A;  3EPY A;  3SBG A;  2YVC A;  1DIK A;  4JKF A;  3X23 A;  3AU4 A;  4JKA A;  2COP A;  2J0M A;  2AL6 A;  4ZRK A;  2HRJ A;  1GC6 A;  1H4R A;  2ABD A;  4JKE A;  4CYE A;  4GXB A;  2ZPY A;  2HE7 A;  2EMS A;  3PVL A;  4ILH A;  1VBG A;  4EKU A;  1HB8 A;  1KBL A;  1EF1 A; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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