1AL2 | Genus

Total Genus 3

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	3
sequence length	68
structure length	60
Chain Sequence	GAQVSSQKVGAHESTINYTTINYYRDSASNAASKQDFSQDPSKFTEPIKDVLIKTAPMLN

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Virus
source organism	Human poliovirus 1
publication title	Structural studies of poliovirus mutants that overcome receptor defects. pubmed doi rcsb
molecule keywords	P1/MAHONEY POLIOVIRUS
total genus	3
structure length	60
sequence length	68
ec nomenclature	ec 2.7.7.48: RNA-directed RNA polymerase.
pdb deposition date	1997-06-09

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
4	PF02226	Pico_P1A	Picornavirus coat protein (VP4)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
4.10.80.10	Few Secondary Structures	Irregular	Rhinovirus 14, subunit 4	Picornavirus coat protein VP4	1al2400

1RVF4 1RUE4 1RUH4 4RHV4 1OOPD 2PLV4 2R044 1NA1D 1BEV4 4GB34 1RMU4 1HRI4 1HXS4 3JD74 4Q4V4 2RMU4 4Q4W4 4PDWD 1PVC4 1POV0 1Z7S4 1VBC4 1RHI4 1R084 1RUI4 3J8F4 2X5ID 3JBG4 4Q4Y4 1D4M4 2R064 2RS34 1EV14 2R074 1VBE4 1RUJ4 1VBA4 1ASJ4 2RS54 1AR74 1AL24 2RS14 1VRH4 1NCQD 1R094 1RUF4 2HWC4 2HWB4 1RUC4 1RUG4 2RR14 1AR94 1MQTD 1H8TD 1VBB4 4Q4X4 1COV4 1PO14 1PIV4 2RM24 1K5MD 1RUD4 1AR64 1VBD4 1AR84 1HRV4 1EAH4 1PO24
chains in the Genus database with same CATH superfamily

4YTPA 2PW9A 1NA1D 1ZP0A 4GB34 3AE5A 3VR9A 2ACZA 5C3JA 2RMU4 4Q4W4 3P4PA 1PVC4 3AE7A 3P4QA 2WU5A 3JBG4 2WDRA 1D4M4 1EV14 3SUCA 1ZOYA 4YXDA 1VRH4 1NCQD 2HWC4 3AEGA 3AECA 1MQTD 2EX3A 3CIRA 2B76A 1K5MD 1XI1A 1AR64 2R7FA 1AR84 1HRV4 1NENA 2WS3A 1PO24 3AEFA 1RVF4 1RUE4 4RHV4 1OOPD 1HRI4 1KF6A 3JD74 3P4SA 1XHZA 1Z7S4 3AEBA 4YSZA 4YSXA 2R064 2R074 3SFEA 2RS54 1AL24 3AE3A 3VRAA 1RUC4 2RR14 1AR94 2PYJA 2RM24 1KFYA 3AEEA 2H88A 4YTNA 2PLV4 2R044 1BEV4 1RMU4 3AEDA 1HXS4 4Q4V4 4PDWD 3P4RA 1RUI4 3GQHA 3AE9A 2RS34 1RUJ4 4YT0A 1VBA4 1ASJ4 2WU2A 1AR74 2RS14 3GQKA 2WDQA 1RUF4 2HWB4 1H8TD 1VBB4 3VRBA 1YQ3A 1PO14 3AE8A 1NEKA 1L0VA 2WP9A 1RUD4 3AE6A 1VBD4 2WQYA 2PY5A 3SFDA 2PZSA 3AE1A 1RUH4 3AE2A 3ABVA 4YTMA 2H89A 1POV0 1XHXA 2WDVA 1VBC4 1RHI4 1R084 3J8F4 5C2TA 2X5ID 4Q4Y4 3VR8A 1VBE4 4KX6A 2FBWA 1YQ4A 1R094 2PYLA 1RUG4 4Q4X4 1COV4 1PIV4 3AE4A 3AEAA 3FI7A 4YSYA 1EAH4
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1RVF 4;  1RUE 4;  1RUH 4;  4RHV 4;  1OOP D;  2PLV 4;  2R04 4;  1NA1 D;  1BEV 4;  4GB3 4;  1RMU 4;  1HRI 4;  1HXS 4;  3JD7 4;  4Q4V 4;  2RMU 4;  4Q4W 4;  4PDW D;  1PVC 4;  1POV 0;  1Z7S 4;  1VBC 4;  1RHI 4;  1R08 4;  1RUI 4;  3J8F 4;  2X5I D;  3JBG 4;  4Q4Y 4;  1D4M 4;  2R06 4;  2RS3 4;  1EV1 4;  2R07 4;  1VBE 4;  1RUJ 4;  1VBA 4;  1ASJ 4;  2RS5 4;  1AR7 4;  1AL2 4;  2RS1 4;  1VRH 4;  1NCQ D;  1R09 4;  1RUF 4;  2HWC 4;  2HWB 4;  1RUC 4;  1RUG 4;  2RR1 4;  1AR9 4;  1MQT D;  1H8T D;  1VBB 4;  4Q4X 4;  1COV 4;  1PO1 4;  1PIV 4;  2RM2 4;  1K5M D;  1RUD 4;  1AR6 4;  1VBD 4;  1AR8 4;  1HRV 4;  1EAH 4;  1PO2 4; 
#chains in the Genus database with same CATH topology
 4YTP A;  2PW9 A;  1NA1 D;  1ZP0 A;  4GB3 4;  3AE5 A;  3VR9 A;  2ACZ A;  5C3J A;  2RMU 4;  4Q4W 4;  3P4P A;  1PVC 4;  3AE7 A;  3P4Q A;  2WU5 A;  3JBG 4;  2WDR A;  1D4M 4;  1EV1 4;  3SUC A;  1ZOY A;  4YXD A;  1VRH 4;  1NCQ D;  2HWC 4;  3AEG A;  3AEC A;  1MQT D;  2EX3 A;  3CIR A;  2B76 A;  1K5M D;  1XI1 A;  1AR6 4;  2R7F A;  1AR8 4;  1HRV 4;  1NEN A;  2WS3 A;  1PO2 4;  3AEF A;  1RVF 4;  1RUE 4;  4RHV 4;  1OOP D;  1HRI 4;  1KF6 A;  3JD7 4;  3P4S A;  1XHZ A;  1Z7S 4;  3AEB A;  4YSZ A;  4YSX A;  2R06 4;  2R07 4;  3SFE A;  2RS5 4;  1AL2 4;  3AE3 A;  3VRA A;  1RUC 4;  2RR1 4;  1AR9 4;  2PYJ A;  2RM2 4;  1KFY A;  3AEE A;  2H88 A;  4YTN A;  2PLV 4;  2R04 4;  1BEV 4;  1RMU 4;  3AED A;  1HXS 4;  4Q4V 4;  4PDW D;  3P4R A;  1RUI 4;  3GQH A;  3AE9 A;  2RS3 4;  1RUJ 4;  4YT0 A;  1VBA 4;  1ASJ 4;  2WU2 A;  1AR7 4;  2RS1 4;  3GQK A;  2WDQ A;  1RUF 4;  2HWB 4;  1H8T D;  1VBB 4;  3VRB A;  1YQ3 A;  1PO1 4;  3AE8 A;  1NEK A;  1L0V A;  2WP9 A;  1RUD 4;  3AE6 A;  1VBD 4;  2WQY A;  2PY5 A;  3SFD A;  2PZS A;  3AE1 A;  1RUH 4;  3AE2 A;  3ABV A;  4YTM A;  2H89 A;  1POV 0;  1XHX A;  2WDV A;  1VBC 4;  1RHI 4;  1R08 4;  3J8F 4;  5C2T A;  2X5I D;  4Q4Y 4;  3VR8 A;  1VBE 4;  4KX6 A;  2FBW A;  1YQ4 A;  1R09 4;  2PYL A;  1RUG 4;  4Q4X 4;  1COV 4;  1PIV 4;  3AE4 A;  3AEA A;  3FI7 A;  4YSY A;  1EAH 4; 
#chains in the Genus database with same CATH homology
 1RVF 4;  1RUE 4;  1RUH 4;  4RHV 4;  1OOP D;  2PLV 4;  2R04 4;  1NA1 D;  1BEV 4;  4GB3 4;  1RMU 4;  1HRI 4;  1HXS 4;  3JD7 4;  4Q4V 4;  2RMU 4;  4Q4W 4;  4PDW D;  1PVC 4;  1POV 0;  1Z7S 4;  1VBC 4;  1RHI 4;  1R08 4;  1RUI 4;  3J8F 4;  2X5I D;  3JBG 4;  4Q4Y 4;  1D4M 4;  2R06 4;  2RS3 4;  1EV1 4;  2R07 4;  1VBE 4;  1RUJ 4;  1VBA 4;  1ASJ 4;  2RS5 4;  1AR7 4;  1AL2 4;  2RS1 4;  1VRH 4;  1NCQ D;  1R09 4;  1RUF 4;  2HWC 4;  2HWB 4;  1RUC 4;  1RUG 4;  2RR1 4;  1AR9 4;  1MQT D;  1H8T D;  1VBB 4;  4Q4X 4;  1COV 4;  1PO1 4;  1PIV 4;  2RM2 4;  1K5M D;  1RUD 4;  1AR6 4;  1VBD 4;  1AR8 4;  1HRV 4;  1EAH 4;  1PO2 4;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1AL24

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations