2RM24

Structural analysis of antiviral agents that interact with the capsid of human rhinoviruses
Total Genus 2
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
2
sequence length
40
structure length
40
Chain Sequence
b'INYYKDAASTSSAGQSLSMDPSKFTEPVKDLMLKGAPALN'
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural analysis of antiviral agents that interact with the capsid of human rhinoviruses.
pubmed doi rcsb
molecule keywords HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1)
source organism Human rhinovirus 14
molecule tags Virus
total genus 2
structure length 40
sequence length 40
ec nomenclature ec 2.7.7.48: RNA-directed RNA polymerase.
pdb deposition date 1988-10-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
4 PF02226 Pico_P1A Picornavirus coat protein (VP4)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.80.10 Few Secondary Structures Irregular Rhinovirus 14, subunit 4 Picornavirus coat protein VP4 2rm2400
1HRI4 1RUD4 1RUG4 1D4M4 2R064 1AR84 3J8F4 1PO14 2R074 1RUH4 1BEV4 1COV4 1EV14 1VRH4 1NCQD 1EAH4 1PO24 1NA1D 1RUF4 1R084 1VBB4 2RS54 1VBA4 1RUC4 1ASJ4 1RVF4 2RMU4 1RHI4 1OOPD 2X5ID 1PIV4 1RUE4 1POV0 4PDWD 1AR74 3JD74 4Q4W4 1AR94 2R044 1MQTD 1VBD4 3JBG4 1HRV4 1AR64 1PVC4 2PLV4 1HXS4 1R094 1VBC4 1AL24 1VBE4 1RUJ4 4GB34 4Q4X4 2RS14 4Q4Y4 4RHV4 1RMU4 2HWC4 1RUI4 2RR14 4Q4V4 2RS34 2HWB4 1Z7S4 1H8TD 1K5MD 2RM24
chains in the Genus database with same CATH superfamily
1AR84 3J8F4 3P4SA 1RUH4 3AE8A 2H88A 1XI1A 1RVF4 2FBWA 1RHI4 3VRBA 1OOPD 1PIV4 3AE4A 4PDWD 4Q4W4 1AR94 1VBD4 1AR64 3AEEA 1R094 2R7FA 4GB34 2RS14 4RHV4 2WDRA 3SUCA 1RUI4 1ZP0A 2HWB4 1K5MD 2PYJA 4YSYA 1D4M4 4YTMA 1KFYA 3VRAA 1EV14 1VRH4 2H89A 1NCQD 1EAH4 1PO24 3AE2A 3CIRA 3GQHA 1VBA4 2PYLA 2X5ID 1RUE4 2PY5A 3AE6A 2R044 3GQKA 1MQTD 3AECA 4YTPA 1XHXA 4Q4Y4 2ACZA 4Q4V4 3VR8A 1RMU4 1RUG4 3SFEA 2R064 3P4PA 3AE7A 2PZSA 1PO14 2R074 1BEV4 4YTNA 3AE3A 2WP9A 1NENA 3AEGA 3P4QA 1NA1D 1RUF4 1R084 1VBB4 3AEBA 4YSZA 3AEFA 4KX6A 3P4RA 1POV0 1AR74 3JD74 3JBG4 3AEAA 1H8TD 1HRV4 1PVC4 2PLV4 1HXS4 1AL24 1NEKA 2RR14 2WQYA 4YSXA 2RS34 1ZOYA 1HRI4 1RUD4 2WS3A 2WU2A 4YXDA 1COV4 5C3JA 3AE5A 2RS54 3ABVA 2EX3A 1RUC4 1L0VA 1ASJ4 4YT0A 2RMU4 3VR9A 1KF6A 3AE1A 2WDVA 4Q4X4 1XHZA 1YQ4A 2B76A 3AE9A 3FI7A 5C2TA 1VBE4 1RUJ4 2WDQA 2WU5A 3SFDA 1YQ3A 3AEDA 2HWC4 2PW9A 1Z7S4 1VBC4 2RM24
chains in the Genus database with same CATH topology
1HRI4 1RUD4 1RUG4 1D4M4 2R064 1AR84 3J8F4 1PO14 2R074 1RUH4 1BEV4 1COV4 1EV14 1VRH4 1NCQD 1EAH4 1PO24 1NA1D 1RUF4 1R084 1VBB4 2RS54 1VBA4 1RUC4 1ASJ4 1RVF4 2RMU4 1RHI4 1OOPD 2X5ID 1PIV4 1RUE4 1POV0 4PDWD 1AR74 3JD74 4Q4W4 1AR94 2R044 1MQTD 1VBD4 3JBG4 1HRV4 1AR64 1PVC4 2PLV4 1HXS4 1R094 1VBC4 1AL24 1VBE4 1RUJ4 4GB34 4Q4X4 2RS14 4Q4Y4 4RHV4 1RMU4 2HWC4 1RUI4 2RR14 4Q4V4 2RS34 2HWB4 1Z7S4 1H8TD 1K5MD 2RM24
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1HRI 4;  1RUD 4;  1RUG 4;  1D4M 4;  2R06 4;  1AR8 4;  3J8F 4;  1PO1 4;  2R07 4;  1RUH 4;  1BEV 4;  1COV 4;  1EV1 4;  1VRH 4;  1NCQ D;  1EAH 4;  1PO2 4;  1NA1 D;  1RUF 4;  1R08 4;  1VBB 4;  2RS5 4;  1VBA 4;  1RUC 4;  1ASJ 4;  1RVF 4;  2RMU 4;  1RHI 4;  1OOP D;  2X5I D;  1PIV 4;  1RUE 4;  1POV 0;  4PDW D;  1AR7 4;  3JD7 4;  4Q4W 4;  1AR9 4;  2R04 4;  1MQT D;  1VBD 4;  3JBG 4;  1HRV 4;  1AR6 4;  1PVC 4;  2PLV 4;  1HXS 4;  1R09 4;  1VBC 4;  1AL2 4;  1VBE 4;  1RUJ 4;  4GB3 4;  4Q4X 4;  2RS1 4;  4Q4Y 4;  4RHV 4;  1RMU 4;  2HWC 4;  1RUI 4;  2RR1 4;  4Q4V 4;  2RS3 4;  2HWB 4;  1Z7S 4;  1H8T D;  1K5M D;  2RM2 4; 
#chains in the Genus database with same CATH topology
 1AR8 4;  3J8F 4;  3P4S A;  1RUH 4;  3AE8 A;  2H88 A;  1XI1 A;  1RVF 4;  2FBW A;  1RHI 4;  3VRB A;  1OOP D;  1PIV 4;  3AE4 A;  4PDW D;  4Q4W 4;  1AR9 4;  1VBD 4;  1AR6 4;  3AEE A;  1R09 4;  2R7F A;  4GB3 4;  2RS1 4;  4RHV 4;  2WDR A;  3SUC A;  1RUI 4;  1ZP0 A;  2HWB 4;  1K5M D;  2PYJ A;  4YSY A;  1D4M 4;  4YTM A;  1KFY A;  3VRA A;  1EV1 4;  1VRH 4;  2H89 A;  1NCQ D;  1EAH 4;  1PO2 4;  3AE2 A;  3CIR A;  3GQH A;  1VBA 4;  2PYL A;  2X5I D;  1RUE 4;  2PY5 A;  3AE6 A;  2R04 4;  3GQK A;  1MQT D;  3AEC A;  4YTP A;  1XHX A;  4Q4Y 4;  2ACZ A;  4Q4V 4;  3VR8 A;  1RMU 4;  1RUG 4;  3SFE A;  2R06 4;  3P4P A;  3AE7 A;  2PZS A;  1PO1 4;  2R07 4;  1BEV 4;  4YTN A;  3AE3 A;  2WP9 A;  1NEN A;  3AEG A;  3P4Q A;  1NA1 D;  1RUF 4;  1R08 4;  1VBB 4;  3AEB A;  4YSZ A;  3AEF A;  4KX6 A;  3P4R A;  1POV 0;  1AR7 4;  3JD7 4;  3JBG 4;  3AEA A;  1H8T D;  1HRV 4;  1PVC 4;  2PLV 4;  1HXS 4;  1AL2 4;  1NEK A;  2RR1 4;  2WQY A;  4YSX A;  2RS3 4;  1ZOY A;  1HRI 4;  1RUD 4;  2WS3 A;  2WU2 A;  4YXD A;  1COV 4;  5C3J A;  3AE5 A;  2RS5 4;  3ABV A;  2EX3 A;  1RUC 4;  1L0V A;  1ASJ 4;  4YT0 A;  2RMU 4;  3VR9 A;  1KF6 A;  3AE1 A;  2WDV A;  4Q4X 4;  1XHZ A;  1YQ4 A;  2B76 A;  3AE9 A;  3FI7 A;  5C2T A;  1VBE 4;  1RUJ 4;  2WDQ A;  2WU5 A;  3SFD A;  1YQ3 A;  3AED A;  2HWC 4;  2PW9 A;  1Z7S 4;  1VBC 4;  2RM2 4; 
#chains in the Genus database with same CATH homology
 1HRI 4;  1RUD 4;  1RUG 4;  1D4M 4;  2R06 4;  1AR8 4;  3J8F 4;  1PO1 4;  2R07 4;  1RUH 4;  1BEV 4;  1COV 4;  1EV1 4;  1VRH 4;  1NCQ D;  1EAH 4;  1PO2 4;  1NA1 D;  1RUF 4;  1R08 4;  1VBB 4;  2RS5 4;  1VBA 4;  1RUC 4;  1ASJ 4;  1RVF 4;  2RMU 4;  1RHI 4;  1OOP D;  2X5I D;  1PIV 4;  1RUE 4;  1POV 0;  4PDW D;  1AR7 4;  3JD7 4;  4Q4W 4;  1AR9 4;  2R04 4;  1MQT D;  1VBD 4;  3JBG 4;  1HRV 4;  1AR6 4;  1PVC 4;  2PLV 4;  1HXS 4;  1R09 4;  1VBC 4;  1AL2 4;  1VBE 4;  1RUJ 4;  4GB3 4;  4Q4X 4;  2RS1 4;  4Q4Y 4;  4RHV 4;  1RMU 4;  2HWC 4;  1RUI 4;  2RR1 4;  4Q4V 4;  2RS3 4;  2HWB 4;  1Z7S 4;  1H8T D;  1K5M D;  2RM2 4; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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