2RM24

Structural analysis of antiviral agents that interact with the capsid of human rhinoviruses
Total Genus 2
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
2
sequence length
40
structure length
40
Chain Sequence
INYYKDAASTSSAGQSLSMDPSKFTEPVKDLMLKGAPALN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Virus
source organism Human rhinovirus 14
publication title Structural analysis of antiviral agents that interact with the capsid of human rhinoviruses.
pubmed doi rcsb
molecule keywords HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1)
total genus 2
structure length 40
sequence length 40
ec nomenclature ec 2.7.7.48: RNA-directed RNA polymerase.
pdb deposition date 1988-10-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
4 PF02226 Pico_P1A Picornavirus coat protein (VP4)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.80.10 Few Secondary Structures Irregular Rhinovirus 14, subunit 4 Picornavirus coat protein VP4 2rm2400
1PO14 2PLV4 1ASJ4 2RR14 4Q4V4 1H8TD 1D4M4 4GB34 1PIV4 1HRV4 1POV0 1R094 2HWC4 2R044 1OOPD 1RUF4 1RUE4 2RM24 1RVF4 1AL24 1RUJ4 1EAH4 1AR94 1K5MD 1RUI4 3JD74 4Q4W4 4Q4Y4 1MQTD 1Z7S4 1R084 1AR84 1NCQD 1VBA4 1RUG4 1PVC4 2RS34 2R074 2HWB4 1EV14 2R064 1VBE4 2RS14 1RHI4 1AR74 1VBD4 1HXS4 1VRH4 3J8F4 1RUC4 1AR64 1BEV4 3JBG4 1VBB4 1PO24 4RHV4 2RMU4 4Q4X4 1VBC4 1RUH4 2X5ID 1COV4 2RS54 1RMU4 1HRI4 1RUD4 1NA1D 4PDWD
chains in the Genus database with same CATH superfamily
3SFEA 4GB34 3AEAA 2HWC4 1OOPD 3GQHA 1AR94 1K5MD 1RUI4 3JD74 3AE5A 4KX6A 4YXDA 1AR84 3AEEA 2R074 2HWB4 2R064 2RS14 3AE3A 1VBD4 3SUCA 2WDQA 3AEBA 1VBB4 2B76A 4YT0A 4Q4X4 2FBWA 3CIRA 3ABVA 1RMU4 1RUD4 4PDWD 2H89A 4YTMA 1ASJ4 2RR14 2WS3A 1KF6A 1R094 2PW9A 3AEFA 1RUE4 3SFDA 2RM24 3AE6A 1RVF4 3P4RA 2PZSA 1RUJ4 1XHXA 1EAH4 4Q4Y4 2WQYA 1YQ4A 1Z7S4 1NCQD 1PVC4 2RS34 4YSYA 1RHI4 1AR74 3J8F4 1AR64 2H88A 2PYLA 1VBC4 1ZP0A 2RS54 2R044 1PO14 2WDRA 1H8TD 1ZOYA 1PIV4 3P4SA 1HRV4 5C2TA 1POV0 3FI7A 2EX3A 1AL24 3AEDA 2WDVA 3AE9A 1MQTD 3AECA 3VR8A 4YSXA 2PY5A 1EV14 1VBE4 1HXS4 3AEGA 1RUC4 3AE2A 1YQ3A 4YTNA 2WP9A 3AE7A 1HRI4 3P4PA 3P4QA 3VRBA 2PLV4 4Q4V4 1D4M4 2PYJA 3VRAA 5C3JA 1RUF4 4YSZA 2R7FA 1KFYA 4Q4W4 3VR9A 1R084 1NEKA 2WU5A 4YTPA 1VBA4 1RUG4 1L0VA 1XI1A 3AE4A 1VRH4 2ACZA 3AE8A 3AE1A 1BEV4 3JBG4 1NENA 1PO24 4RHV4 3GQKA 2RMU4 1RUH4 2X5ID 1XHZA 2WU2A 1COV4 1NA1D
chains in the Genus database with same CATH topology
1PO14 2PLV4 1ASJ4 2RR14 4Q4V4 1H8TD 1D4M4 4GB34 1PIV4 1HRV4 1POV0 1R094 2HWC4 2R044 1OOPD 1RUF4 1RUE4 2RM24 1RVF4 1AL24 1RUJ4 1EAH4 1AR94 1K5MD 1RUI4 3JD74 4Q4W4 4Q4Y4 1MQTD 1Z7S4 1R084 1AR84 1NCQD 1VBA4 1RUG4 1PVC4 2RS34 2R074 2HWB4 1EV14 2R064 1VBE4 2RS14 1RHI4 1AR74 1VBD4 1HXS4 1VRH4 3J8F4 1RUC4 1AR64 1BEV4 3JBG4 1VBB4 1PO24 4RHV4 2RMU4 4Q4X4 1VBC4 1RUH4 2X5ID 1COV4 2RS54 1RMU4 1HRI4 1RUD4 1NA1D 4PDWD
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1PO1 4;  2PLV 4;  1ASJ 4;  2RR1 4;  4Q4V 4;  1H8T D;  1D4M 4;  4GB3 4;  1PIV 4;  1HRV 4;  1POV 0;  1R09 4;  2HWC 4;  2R04 4;  1OOP D;  1RUF 4;  1RUE 4;  2RM2 4;  1RVF 4;  1AL2 4;  1RUJ 4;  1EAH 4;  1AR9 4;  1K5M D;  1RUI 4;  3JD7 4;  4Q4W 4;  4Q4Y 4;  1MQT D;  1Z7S 4;  1R08 4;  1AR8 4;  1NCQ D;  1VBA 4;  1RUG 4;  1PVC 4;  2RS3 4;  2R07 4;  2HWB 4;  1EV1 4;  2R06 4;  1VBE 4;  2RS1 4;  1RHI 4;  1AR7 4;  1VBD 4;  1HXS 4;  1VRH 4;  3J8F 4;  1RUC 4;  1AR6 4;  1BEV 4;  3JBG 4;  1VBB 4;  1PO2 4;  4RHV 4;  2RMU 4;  4Q4X 4;  1VBC 4;  1RUH 4;  2X5I D;  1COV 4;  2RS5 4;  1RMU 4;  1HRI 4;  1RUD 4;  1NA1 D;  4PDW D; 
#chains in the Genus database with same CATH topology
 3SFE A;  4GB3 4;  3AEA A;  2HWC 4;  1OOP D;  3GQH A;  1AR9 4;  1K5M D;  1RUI 4;  3JD7 4;  3AE5 A;  4KX6 A;  4YXD A;  1AR8 4;  3AEE A;  2R07 4;  2HWB 4;  2R06 4;  2RS1 4;  3AE3 A;  1VBD 4;  3SUC A;  2WDQ A;  3AEB A;  1VBB 4;  2B76 A;  4YT0 A;  4Q4X 4;  2FBW A;  3CIR A;  3ABV A;  1RMU 4;  1RUD 4;  4PDW D;  2H89 A;  4YTM A;  1ASJ 4;  2RR1 4;  2WS3 A;  1KF6 A;  1R09 4;  2PW9 A;  3AEF A;  1RUE 4;  3SFD A;  2RM2 4;  3AE6 A;  1RVF 4;  3P4R A;  2PZS A;  1RUJ 4;  1XHX A;  1EAH 4;  4Q4Y 4;  2WQY A;  1YQ4 A;  1Z7S 4;  1NCQ D;  1PVC 4;  2RS3 4;  4YSY A;  1RHI 4;  1AR7 4;  3J8F 4;  1AR6 4;  2H88 A;  2PYL A;  1VBC 4;  1ZP0 A;  2RS5 4;  2R04 4;  1PO1 4;  2WDR A;  1H8T D;  1ZOY A;  1PIV 4;  3P4S A;  1HRV 4;  5C2T A;  1POV 0;  3FI7 A;  2EX3 A;  1AL2 4;  3AED A;  2WDV A;  3AE9 A;  1MQT D;  3AEC A;  3VR8 A;  4YSX A;  2PY5 A;  1EV1 4;  1VBE 4;  1HXS 4;  3AEG A;  1RUC 4;  3AE2 A;  1YQ3 A;  4YTN A;  2WP9 A;  3AE7 A;  1HRI 4;  3P4P A;  3P4Q A;  3VRB A;  2PLV 4;  4Q4V 4;  1D4M 4;  2PYJ A;  3VRA A;  5C3J A;  1RUF 4;  4YSZ A;  2R7F A;  1KFY A;  4Q4W 4;  3VR9 A;  1R08 4;  1NEK A;  2WU5 A;  4YTP A;  1VBA 4;  1RUG 4;  1L0V A;  1XI1 A;  3AE4 A;  1VRH 4;  2ACZ A;  3AE8 A;  3AE1 A;  1BEV 4;  3JBG 4;  1NEN A;  1PO2 4;  4RHV 4;  3GQK A;  2RMU 4;  1RUH 4;  2X5I D;  1XHZ A;  2WU2 A;  1COV 4;  1NA1 D; 
#chains in the Genus database with same CATH homology
 1PO1 4;  2PLV 4;  1ASJ 4;  2RR1 4;  4Q4V 4;  1H8T D;  1D4M 4;  4GB3 4;  1PIV 4;  1HRV 4;  1POV 0;  1R09 4;  2HWC 4;  2R04 4;  1OOP D;  1RUF 4;  1RUE 4;  2RM2 4;  1RVF 4;  1AL2 4;  1RUJ 4;  1EAH 4;  1AR9 4;  1K5M D;  1RUI 4;  3JD7 4;  4Q4W 4;  4Q4Y 4;  1MQT D;  1Z7S 4;  1R08 4;  1AR8 4;  1NCQ D;  1VBA 4;  1RUG 4;  1PVC 4;  2RS3 4;  2R07 4;  2HWB 4;  1EV1 4;  2R06 4;  1VBE 4;  2RS1 4;  1RHI 4;  1AR7 4;  1VBD 4;  1HXS 4;  1VRH 4;  3J8F 4;  1RUC 4;  1AR6 4;  1BEV 4;  3JBG 4;  1VBB 4;  1PO2 4;  4RHV 4;  2RMU 4;  4Q4X 4;  1VBC 4;  1RUH 4;  2X5I D;  1COV 4;  2RS5 4;  1RMU 4;  1HRI 4;  1RUD 4;  1NA1 D;  4PDW D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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