1AR64

P1/mahoney poliovirus, double mutant v1160i +p1095s
Total Genus 2
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
2
sequence length
68
structure length
60
Chain Sequence
GAQVSSQKVGAHESTINYTTINYYRDSASNAASKQDFSQDPSKFTEPIKDVLIKTAPMLN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule keywords P1/MAHONEY POLIOVIRUS
publication title Structural studies of poliovirus mutants that overcome receptor defects.
pubmed doi rcsb
source organism Human poliovirus 1
molecule tags Virus
total genus 2
structure length 60
sequence length 68
ec nomenclature ec 2.7.7.48: RNA-directed RNA polymerase.
pdb deposition date 1997-08-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
4 PF02226 Pico_P1A Picornavirus coat protein (VP4)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.80.10 Few Secondary Structures Irregular Rhinovirus 14, subunit 4 Picornavirus coat protein VP4 1ar6400
2R044 1AR64 1RUG4 1RUE4 1AR94 1NA1D 1Z7S4 1VBB4 2RM24 1COV4 1HRV4 3JD74 1ASJ4 2HWB4 4PDWD 1EV14 1MQTD 1RUD4 1H8TD 1EAH4 1PO24 1PIV4 1RUI4 1VBA4 1VBC4 2HWC4 1RUC4 3JBG4 2PLV4 4GB34 1VBD4 1AR74 1R084 1NCQD 1RUJ4 4Q4Y4 4Q4V4 3J8F4 1RHI4 2X5ID 2RS14 4Q4X4 1D4M4 1PO14 1RVF4 1R094 1BEV4 1OOPD 1HRI4 1HXS4 1POV0 1RMU4 1VBE4 2RR14 2RS34 2RS54 4Q4W4 2RMU4 1RUF4 1VRH4 1AR84 1PVC4 1AL24 1RUH4 1K5MD 4RHV4 2R074 2R064
chains in the Genus database with same CATH superfamily
3VRAA 1RUE4 2PZSA 2H88A 3AEDA 1COV4 1XI1A 2HWB4 2WQYA 1L0VA 3AE1A 1RUI4 4YSXA 1RUC4 3AECA 3AE8A 3JBG4 2EX3A 1RUJ4 4YTMA 2FBWA 3J8F4 2WU2A 1PO14 1OOPD 5C2TA 1VBE4 1HXS4 2RMU4 1YQ3A 2PW9A 1RUF4 2PYJA 1NENA 2WS3A 4YXDA 1AL24 1VBA4 4GB34 1VBB4 2PY5A 3JD74 3GQKA 4PDWD 4YTNA 1MQTD 1RUD4 1H8TD 1EAH4 1PO24 3AE7A 1VBC4 1VBD4 3P4QA 3SUCA 3AEAA 4Q4V4 4Q4X4 4KX6A 1YQ4A 1BEV4 2WP9A 1HRI4 1POV0 3FI7A 3P4RA 4Q4W4 3AEBA 1KF6A 1ZP0A 3P4PA 2R074 1XHXA 2R064 2R044 2WDRA 1AR94 2RM24 1Z7S4 1NEKA 2WDVA 1HRV4 3AE4A 1XHZA 1PIV4 2HWC4 2PLV4 3ABVA 1R084 1NCQD 4Q4Y4 3AE3A 2R7FA 2ACZA 2RS14 2X5ID 1D4M4 1RVF4 3VRBA 3VR9A 2RS34 4YSZA 2RR14 2H89A 2B76A 2WDQA 1VRH4 3GQHA 1RUH4 3SFEA 1K5MD 3AE9A 4RHV4 3CIRA 1AR64 1RUG4 2WU5A 2PYLA 1NA1D 4YT0A 3SFDA 1ASJ4 4YSYA 1EV14 3AEEA 3AEFA 3VR8A 1ZOYA 1AR74 3AE2A 1KFYA 1RHI4 3AEGA 1R094 1RMU4 2RS54 3AE6A 3P4SA 4YTPA 3AE5A 1AR84 1PVC4 5C3JA
chains in the Genus database with same CATH topology
2R044 1AR64 1RUG4 1RUE4 1AR94 1NA1D 1Z7S4 1VBB4 2RM24 1COV4 1HRV4 3JD74 1ASJ4 2HWB4 4PDWD 1EV14 1MQTD 1RUD4 1H8TD 1EAH4 1PO24 1PIV4 1RUI4 1VBA4 1VBC4 2HWC4 1RUC4 3JBG4 2PLV4 4GB34 1VBD4 1AR74 1R084 1NCQD 1RUJ4 4Q4Y4 4Q4V4 3J8F4 1RHI4 2X5ID 2RS14 4Q4X4 1D4M4 1PO14 1RVF4 1R094 1BEV4 1OOPD 1HRI4 1HXS4 1POV0 1RMU4 1VBE4 2RR14 2RS34 2RS54 4Q4W4 2RMU4 1RUF4 1VRH4 1AR84 1PVC4 1AL24 1RUH4 1K5MD 4RHV4 2R074 2R064
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2R04 4;  1AR6 4;  1RUG 4;  1RUE 4;  1AR9 4;  1NA1 D;  1Z7S 4;  1VBB 4;  2RM2 4;  1COV 4;  1HRV 4;  3JD7 4;  1ASJ 4;  2HWB 4;  4PDW D;  1EV1 4;  1MQT D;  1RUD 4;  1H8T D;  1EAH 4;  1PO2 4;  1PIV 4;  1RUI 4;  1VBA 4;  1VBC 4;  2HWC 4;  1RUC 4;  3JBG 4;  2PLV 4;  4GB3 4;  1VBD 4;  1AR7 4;  1R08 4;  1NCQ D;  1RUJ 4;  4Q4Y 4;  4Q4V 4;  3J8F 4;  1RHI 4;  2X5I D;  2RS1 4;  4Q4X 4;  1D4M 4;  1PO1 4;  1RVF 4;  1R09 4;  1BEV 4;  1OOP D;  1HRI 4;  1HXS 4;  1POV 0;  1RMU 4;  1VBE 4;  2RR1 4;  2RS3 4;  2RS5 4;  4Q4W 4;  2RMU 4;  1RUF 4;  1VRH 4;  1AR8 4;  1PVC 4;  1AL2 4;  1RUH 4;  1K5M D;  4RHV 4;  2R07 4;  2R06 4; 
#chains in the Genus database with same CATH topology
 3VRA A;  1RUE 4;  2PZS A;  2H88 A;  3AED A;  1COV 4;  1XI1 A;  2HWB 4;  2WQY A;  1L0V A;  3AE1 A;  1RUI 4;  4YSX A;  1RUC 4;  3AEC A;  3AE8 A;  3JBG 4;  2EX3 A;  1RUJ 4;  4YTM A;  2FBW A;  3J8F 4;  2WU2 A;  1PO1 4;  1OOP D;  5C2T A;  1VBE 4;  1HXS 4;  2RMU 4;  1YQ3 A;  2PW9 A;  1RUF 4;  2PYJ A;  1NEN A;  2WS3 A;  4YXD A;  1AL2 4;  1VBA 4;  4GB3 4;  1VBB 4;  2PY5 A;  3JD7 4;  3GQK A;  4PDW D;  4YTN A;  1MQT D;  1RUD 4;  1H8T D;  1EAH 4;  1PO2 4;  3AE7 A;  1VBC 4;  1VBD 4;  3P4Q A;  3SUC A;  3AEA A;  4Q4V 4;  4Q4X 4;  4KX6 A;  1YQ4 A;  1BEV 4;  2WP9 A;  1HRI 4;  1POV 0;  3FI7 A;  3P4R A;  4Q4W 4;  3AEB A;  1KF6 A;  1ZP0 A;  3P4P A;  2R07 4;  1XHX A;  2R06 4;  2R04 4;  2WDR A;  1AR9 4;  2RM2 4;  1Z7S 4;  1NEK A;  2WDV A;  1HRV 4;  3AE4 A;  1XHZ A;  1PIV 4;  2HWC 4;  2PLV 4;  3ABV A;  1R08 4;  1NCQ D;  4Q4Y 4;  3AE3 A;  2R7F A;  2ACZ A;  2RS1 4;  2X5I D;  1D4M 4;  1RVF 4;  3VRB A;  3VR9 A;  2RS3 4;  4YSZ A;  2RR1 4;  2H89 A;  2B76 A;  2WDQ A;  1VRH 4;  3GQH A;  1RUH 4;  3SFE A;  1K5M D;  3AE9 A;  4RHV 4;  3CIR A;  1AR6 4;  1RUG 4;  2WU5 A;  2PYL A;  1NA1 D;  4YT0 A;  3SFD A;  1ASJ 4;  4YSY A;  1EV1 4;  3AEE A;  3AEF A;  3VR8 A;  1ZOY A;  1AR7 4;  3AE2 A;  1KFY A;  1RHI 4;  3AEG A;  1R09 4;  1RMU 4;  2RS5 4;  3AE6 A;  3P4S A;  4YTP A;  3AE5 A;  1AR8 4;  1PVC 4;  5C3J A; 
#chains in the Genus database with same CATH homology
 2R04 4;  1AR6 4;  1RUG 4;  1RUE 4;  1AR9 4;  1NA1 D;  1Z7S 4;  1VBB 4;  2RM2 4;  1COV 4;  1HRV 4;  3JD7 4;  1ASJ 4;  2HWB 4;  4PDW D;  1EV1 4;  1MQT D;  1RUD 4;  1H8T D;  1EAH 4;  1PO2 4;  1PIV 4;  1RUI 4;  1VBA 4;  1VBC 4;  2HWC 4;  1RUC 4;  3JBG 4;  2PLV 4;  4GB3 4;  1VBD 4;  1AR7 4;  1R08 4;  1NCQ D;  1RUJ 4;  4Q4Y 4;  4Q4V 4;  3J8F 4;  1RHI 4;  2X5I D;  2RS1 4;  4Q4X 4;  1D4M 4;  1PO1 4;  1RVF 4;  1R09 4;  1BEV 4;  1OOP D;  1HRI 4;  1HXS 4;  1POV 0;  1RMU 4;  1VBE 4;  2RR1 4;  2RS3 4;  2RS5 4;  4Q4W 4;  2RMU 4;  1RUF 4;  1VRH 4;  1AR8 4;  1PVC 4;  1AL2 4;  1RUH 4;  1K5M D;  4RHV 4;  2R07 4;  2R06 4; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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