1AR64

P1/mahoney poliovirus, double mutant v1160i +p1095s
Total Genus 2
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
2
sequence length
68
structure length
60
Chain Sequence
GAQVSSQKVGAHESTINYTTINYYRDSASNAASKQDFSQDPSKFTEPIKDVLIKTAPMLN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Virus
source organism Human poliovirus 1
publication title Structural studies of poliovirus mutants that overcome receptor defects.
pubmed doi rcsb
molecule keywords P1/MAHONEY POLIOVIRUS
total genus 2
structure length 60
sequence length 68
ec nomenclature ec 2.7.7.48: RNA-directed RNA polymerase.
pdb deposition date 1997-08-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
4 PF02226 Pico_P1A Picornavirus coat protein (VP4)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.80.10 Few Secondary Structures Irregular Rhinovirus 14, subunit 4 Picornavirus coat protein VP4 1ar6400
1NA1D 2PLV4 2R044 1AL24 1RVF4 1R084 3J8F4 1RUG4 1PIV4 1H8TD 1PVC4 1NCQD 3JBG4 2RS34 4PDWD 1PO24 1VRH4 4Q4Y4 1RUJ4 1VBB4 1HRI4 1BEV4 1RUC4 1K5MD 4GB34 1RMU4 1RUF4 2RS54 1HRV4 1RUI4 2R074 4Q4W4 2RS14 1PO14 2HWB4 1Z7S4 1POV0 1AR64 1EV14 1VBE4 2HWC4 3JD74 2RMU4 2R064 1AR74 1R094 1RHI4 1RUH4 2RR14 2X5ID 4Q4X4 1AR94 1RUD4 1OOPD 1RUE4 4RHV4 4Q4V4 1COV4 1HXS4 1VBC4 1D4M4 1VBA4 2RM24 1ASJ4 1VBD4 1MQTD 1EAH4 1AR84
chains in the Genus database with same CATH superfamily
2H88A 3SUCA 1AL24 1R084 1PIV4 5C2TA 3AE1A 1L0VA 4YT0A 4YTMA 2WU2A 4KX6A 2PW9A 3AEAA 2PYJA 1HRV4 2WQYA 1RUI4 1PO14 1AR74 1ZOYA 3P4QA 1COV4 3CIRA 4YSZA 2RM24 1ASJ4 1MQTD 1EAH4 1AR84 3AEBA 2R7FA 3J8F4 1RVF4 3AE8A 3GQHA 1NCQD 1PO24 4Q4Y4 2ACZA 1RUC4 3P4PA 1RUF4 1YQ4A 3AE9A 2PZSA 1POV0 3AE3A 2RMU4 1XI1A 1RHI4 2H89A 3AE4A 2EX3A 4Q4X4 2PY5A 1RUE4 4Q4V4 1HXS4 1D4M4 1K5MD 3AEFA 4YXDA 2R044 3AE2A 3AEDA 1RUG4 1KFYA 3P4SA 3P4RA 1H8TD 3JBG4 3SFEA 2RS34 4PDWD 5C3JA 1VRH4 1VBB4 1HRI4 2B76A 3VRAA 3AEEA 4GB34 1RMU4 2RS54 4YSYA 1YQ3A 2R074 1XHZA 4YSXA 3GQKA 2FBWA 2WDQA 2HWB4 1Z7S4 2HWC4 3JD74 3AECA 2RR14 1ZP0A 1AR94 1OOPD 1VBD4 1NA1D 2PLV4 3AE6A 2WU5A 2WP9A 1XHXA 2WS3A 3AEGA 1RUJ4 1BEV4 3VR8A 1KF6A 3AE5A 4YTPA 2WDRA 4Q4W4 2RS14 3ABVA 3AE7A 1AR64 1EV14 1VBE4 3VRBA 2R064 3VR9A 1R094 1RUH4 2X5ID 1NEKA 1RUD4 3SFDA 4RHV4 2PYLA 4YTNA 1VBC4 3FI7A 1VBA4 2WDVA 1NENA 1PVC4
chains in the Genus database with same CATH topology
1NA1D 2PLV4 2R044 1AL24 1RVF4 1R084 3J8F4 1RUG4 1PIV4 1H8TD 1PVC4 1NCQD 3JBG4 2RS34 4PDWD 1PO24 1VRH4 4Q4Y4 1RUJ4 1VBB4 1HRI4 1BEV4 1RUC4 1K5MD 4GB34 1RMU4 1RUF4 2RS54 1HRV4 1RUI4 2R074 4Q4W4 2RS14 1PO14 2HWB4 1Z7S4 1POV0 1AR64 1EV14 1VBE4 2HWC4 3JD74 2RMU4 2R064 1AR74 1R094 1RHI4 1RUH4 2RR14 2X5ID 4Q4X4 1AR94 1RUD4 1OOPD 1RUE4 4RHV4 4Q4V4 1COV4 1HXS4 1VBC4 1D4M4 1VBA4 2RM24 1ASJ4 1VBD4 1MQTD 1EAH4 1AR84
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1NA1 D;  2PLV 4;  2R04 4;  1AL2 4;  1RVF 4;  1R08 4;  3J8F 4;  1RUG 4;  1PIV 4;  1H8T D;  1PVC 4;  1NCQ D;  3JBG 4;  2RS3 4;  4PDW D;  1PO2 4;  1VRH 4;  4Q4Y 4;  1RUJ 4;  1VBB 4;  1HRI 4;  1BEV 4;  1RUC 4;  1K5M D;  4GB3 4;  1RMU 4;  1RUF 4;  2RS5 4;  1HRV 4;  1RUI 4;  2R07 4;  4Q4W 4;  2RS1 4;  1PO1 4;  2HWB 4;  1Z7S 4;  1POV 0;  1AR6 4;  1EV1 4;  1VBE 4;  2HWC 4;  3JD7 4;  2RMU 4;  2R06 4;  1AR7 4;  1R09 4;  1RHI 4;  1RUH 4;  2RR1 4;  2X5I D;  4Q4X 4;  1AR9 4;  1RUD 4;  1OOP D;  1RUE 4;  4RHV 4;  4Q4V 4;  1COV 4;  1HXS 4;  1VBC 4;  1D4M 4;  1VBA 4;  2RM2 4;  1ASJ 4;  1VBD 4;  1MQT D;  1EAH 4;  1AR8 4; 
#chains in the Genus database with same CATH topology
 2H88 A;  3SUC A;  1AL2 4;  1R08 4;  1PIV 4;  5C2T A;  3AE1 A;  1L0V A;  4YT0 A;  4YTM A;  2WU2 A;  4KX6 A;  2PW9 A;  3AEA A;  2PYJ A;  1HRV 4;  2WQY A;  1RUI 4;  1PO1 4;  1AR7 4;  1ZOY A;  3P4Q A;  1COV 4;  3CIR A;  4YSZ A;  2RM2 4;  1ASJ 4;  1MQT D;  1EAH 4;  1AR8 4;  3AEB A;  2R7F A;  3J8F 4;  1RVF 4;  3AE8 A;  3GQH A;  1NCQ D;  1PO2 4;  4Q4Y 4;  2ACZ A;  1RUC 4;  3P4P A;  1RUF 4;  1YQ4 A;  3AE9 A;  2PZS A;  1POV 0;  3AE3 A;  2RMU 4;  1XI1 A;  1RHI 4;  2H89 A;  3AE4 A;  2EX3 A;  4Q4X 4;  2PY5 A;  1RUE 4;  4Q4V 4;  1HXS 4;  1D4M 4;  1K5M D;  3AEF A;  4YXD A;  2R04 4;  3AE2 A;  3AED A;  1RUG 4;  1KFY A;  3P4S A;  3P4R A;  1H8T D;  3JBG 4;  3SFE A;  2RS3 4;  4PDW D;  5C3J A;  1VRH 4;  1VBB 4;  1HRI 4;  2B76 A;  3VRA A;  3AEE A;  4GB3 4;  1RMU 4;  2RS5 4;  4YSY A;  1YQ3 A;  2R07 4;  1XHZ A;  4YSX A;  3GQK A;  2FBW A;  2WDQ A;  2HWB 4;  1Z7S 4;  2HWC 4;  3JD7 4;  3AEC A;  2RR1 4;  1ZP0 A;  1AR9 4;  1OOP D;  1VBD 4;  1NA1 D;  2PLV 4;  3AE6 A;  2WU5 A;  2WP9 A;  1XHX A;  2WS3 A;  3AEG A;  1RUJ 4;  1BEV 4;  3VR8 A;  1KF6 A;  3AE5 A;  4YTP A;  2WDR A;  4Q4W 4;  2RS1 4;  3ABV A;  3AE7 A;  1AR6 4;  1EV1 4;  1VBE 4;  3VRB A;  2R06 4;  3VR9 A;  1R09 4;  1RUH 4;  2X5I D;  1NEK A;  1RUD 4;  3SFD A;  4RHV 4;  2PYL A;  4YTN A;  1VBC 4;  3FI7 A;  1VBA 4;  2WDV A;  1NEN A;  1PVC 4; 
#chains in the Genus database with same CATH homology
 1NA1 D;  2PLV 4;  2R04 4;  1AL2 4;  1RVF 4;  1R08 4;  3J8F 4;  1RUG 4;  1PIV 4;  1H8T D;  1PVC 4;  1NCQ D;  3JBG 4;  2RS3 4;  4PDW D;  1PO2 4;  1VRH 4;  4Q4Y 4;  1RUJ 4;  1VBB 4;  1HRI 4;  1BEV 4;  1RUC 4;  1K5M D;  4GB3 4;  1RMU 4;  1RUF 4;  2RS5 4;  1HRV 4;  1RUI 4;  2R07 4;  4Q4W 4;  2RS1 4;  1PO1 4;  2HWB 4;  1Z7S 4;  1POV 0;  1AR6 4;  1EV1 4;  1VBE 4;  2HWC 4;  3JD7 4;  2RMU 4;  2R06 4;  1AR7 4;  1R09 4;  1RHI 4;  1RUH 4;  2RR1 4;  2X5I D;  4Q4X 4;  1AR9 4;  1RUD 4;  1OOP D;  1RUE 4;  4RHV 4;  4Q4V 4;  1COV 4;  1HXS 4;  1VBC 4;  1D4M 4;  1VBA 4;  2RM2 4;  1ASJ 4;  1VBD 4;  1MQT D;  1EAH 4;  1AR8 4; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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