1PO14

Poliovirus (type 1, mahoney) in complex with r80633, an inhibitor of viral replication
Total Genus 4
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
4
sequence length
68
structure length
62
Chain Sequence
GAQVSSQKVGAHENSSTINYTTINYYRDSASNAASKQDFSQDPSKFTEPIKDVLIKTAPMLN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Virus
molecule keywords POLIOVIRUS TYPE 1 MAHONEY
publication title Ligand-induced conformational changes in poliovirus-antiviral drug complexes.
pubmed doi rcsb
total genus 4
structure length 62
sequence length 68
ec nomenclature ec 2.7.7.48: RNA-directed RNA polymerase.
pdb deposition date 1997-01-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
4 PF02226 Pico_P1A Picornavirus coat protein (VP4)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.80.10 Few Secondary Structures Irregular Rhinovirus 14, subunit 4 Picornavirus coat protein VP4 1po1400
1RUD4 3JBG4 2X5ID 1VBE4 1AR94 1VBA4 1RUH4 1RUI4 1VBC4 1RUF4 4Q4V4 1EV14 1EAH4 1RUC4 2RR14 4PDWD 1R094 1MQTD 1HXS4 2HWB4 2R064 1AL24 1RMU4 1VBB4 1RUE4 2RS34 1HRV4 2RS14 1BEV4 2RMU4 1OOPD 1K5MD 1AR64 1AR84 1RUG4 1PO14 4Q4W4 1H8TD 1PO24 2R044 2R074 4GB34 1RVF4 1NCQD 1NA1D 1ASJ4 1HRI4 1R084 4Q4Y4 1PVC4 1RUJ4 1AR74 1Z7S4 1VBD4 4Q4X4 1PIV4 1D4M4 1VRH4 1COV4 2HWC4 1POV0 2RM24 2RS54 3J8F4 3JD74 1RHI4 2PLV4 4RHV4
chains in the Genus database with same CATH superfamily
3AEAA 3CIRA 1NEKA 3JBG4 2FBWA 1VBA4 2H88A 2WDRA 1RUF4 1EV14 3AE8A 3GQHA 1RMU4 1AR64 2PZSA 1AR84 4Q4W4 2R074 2PYLA 1Z7S4 2WDQA 3P4QA 1D4M4 1COV4 3AE5A 1VBC4 2RMU4 1KFYA 3AECA 3P4SA 3AEGA 1KF6A 1AR94 3AE7A 1EAH4 1RUC4 2B76A 1R094 2WU5A 1MQTD 5C3JA 1AL24 2H89A 3AEFA 1VBB4 1RUE4 3SUCA 3AE6A 2RS14 1BEV4 3P4PA 1ZP0A 1RUG4 4YSZA 2R044 1NCQD 3VR8A 1ASJ4 1ZOYA 2EX3A 1RUJ4 4YTMA 1PIV4 1L0VA 2RM24 3ABVA 3J8F4 1RHI4 2PLV4 2X5ID 1VBE4 2WQYA 2R7FA 4Q4V4 2RR14 2R064 1HXS4 2HWB4 1XI1A 4YSXA 4YSYA 2WS3A 4KX6A 1NENA 3AE1A 3GQKA 3SFDA 1K5MD 1XHXA 1PO14 1H8TD 1YQ3A 3AE3A 4YTPA 1NA1D 4YXDA 3AE4A 1R084 4Q4X4 1VRH4 2RS54 2HWC4 1XHZA 3P4RA 3FI7A 1RUD4 2PW9A 1RUH4 1RUI4 3AEDA 3AEBA 2WP9A 4PDWD 2WU2A 5C2TA 2PY5A 3AE9A 3AE2A 3VRAA 4YT0A 2RS34 1HRV4 3AEEA 1YQ4A 4YTNA 1OOPD 1PO24 4GB34 1RVF4 3VR9A 3VRBA 1HRI4 2PYJA 1PVC4 1AR74 2WDVA 2ACZA 3JD74 3SFEA 1POV0 4Q4Y4 1VBD4 4RHV4
chains in the Genus database with same CATH topology
1RUD4 3JBG4 2X5ID 1VBE4 1AR94 1VBA4 1RUH4 1RUI4 1VBC4 1RUF4 4Q4V4 1EV14 1EAH4 1RUC4 2RR14 4PDWD 1R094 1MQTD 1HXS4 2HWB4 2R064 1AL24 1RMU4 1VBB4 1RUE4 2RS34 1HRV4 2RS14 1BEV4 2RMU4 1OOPD 1K5MD 1AR64 1AR84 1RUG4 1PO14 4Q4W4 1H8TD 1PO24 2R044 2R074 4GB34 1RVF4 1NCQD 1NA1D 1ASJ4 1HRI4 1R084 4Q4Y4 1PVC4 1RUJ4 1AR74 1Z7S4 1VBD4 4Q4X4 1PIV4 1D4M4 1VRH4 1COV4 2HWC4 1POV0 2RM24 2RS54 3J8F4 3JD74 1RHI4 2PLV4 4RHV4
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1RUD 4;  3JBG 4;  2X5I D;  1VBE 4;  1AR9 4;  1VBA 4;  1RUH 4;  1RUI 4;  1VBC 4;  1RUF 4;  4Q4V 4;  1EV1 4;  1EAH 4;  1RUC 4;  2RR1 4;  4PDW D;  1R09 4;  1MQT D;  1HXS 4;  2HWB 4;  2R06 4;  1AL2 4;  1RMU 4;  1VBB 4;  1RUE 4;  2RS3 4;  1HRV 4;  2RS1 4;  1BEV 4;  2RMU 4;  1OOP D;  1K5M D;  1AR6 4;  1AR8 4;  1RUG 4;  1PO1 4;  4Q4W 4;  1H8T D;  1PO2 4;  2R04 4;  2R07 4;  4GB3 4;  1RVF 4;  1NCQ D;  1NA1 D;  1ASJ 4;  1HRI 4;  1R08 4;  4Q4Y 4;  1PVC 4;  1RUJ 4;  1AR7 4;  1Z7S 4;  1VBD 4;  4Q4X 4;  1PIV 4;  1D4M 4;  1VRH 4;  1COV 4;  2HWC 4;  1POV 0;  2RM2 4;  2RS5 4;  3J8F 4;  3JD7 4;  1RHI 4;  2PLV 4;  4RHV 4; 
#chains in the Genus database with same CATH topology
 3AEA A;  3CIR A;  1NEK A;  3JBG 4;  2FBW A;  1VBA 4;  2H88 A;  2WDR A;  1RUF 4;  1EV1 4;  3AE8 A;  3GQH A;  1RMU 4;  1AR6 4;  2PZS A;  1AR8 4;  4Q4W 4;  2R07 4;  2PYL A;  1Z7S 4;  2WDQ A;  3P4Q A;  1D4M 4;  1COV 4;  3AE5 A;  1VBC 4;  2RMU 4;  1KFY A;  3AEC A;  3P4S A;  3AEG A;  1KF6 A;  1AR9 4;  3AE7 A;  1EAH 4;  1RUC 4;  2B76 A;  1R09 4;  2WU5 A;  1MQT D;  5C3J A;  1AL2 4;  2H89 A;  3AEF A;  1VBB 4;  1RUE 4;  3SUC A;  3AE6 A;  2RS1 4;  1BEV 4;  3P4P A;  1ZP0 A;  1RUG 4;  4YSZ A;  2R04 4;  1NCQ D;  3VR8 A;  1ASJ 4;  1ZOY A;  2EX3 A;  1RUJ 4;  4YTM A;  1PIV 4;  1L0V A;  2RM2 4;  3ABV A;  3J8F 4;  1RHI 4;  2PLV 4;  2X5I D;  1VBE 4;  2WQY A;  2R7F A;  4Q4V 4;  2RR1 4;  2R06 4;  1HXS 4;  2HWB 4;  1XI1 A;  4YSX A;  4YSY A;  2WS3 A;  4KX6 A;  1NEN A;  3AE1 A;  3GQK A;  3SFD A;  1K5M D;  1XHX A;  1PO1 4;  1H8T D;  1YQ3 A;  3AE3 A;  4YTP A;  1NA1 D;  4YXD A;  3AE4 A;  1R08 4;  4Q4X 4;  1VRH 4;  2RS5 4;  2HWC 4;  1XHZ A;  3P4R A;  3FI7 A;  1RUD 4;  2PW9 A;  1RUH 4;  1RUI 4;  3AED A;  3AEB A;  2WP9 A;  4PDW D;  2WU2 A;  5C2T A;  2PY5 A;  3AE9 A;  3AE2 A;  3VRA A;  4YT0 A;  2RS3 4;  1HRV 4;  3AEE A;  1YQ4 A;  4YTN A;  1OOP D;  1PO2 4;  4GB3 4;  1RVF 4;  3VR9 A;  3VRB A;  1HRI 4;  2PYJ A;  1PVC 4;  1AR7 4;  2WDV A;  2ACZ A;  3JD7 4;  3SFE A;  1POV 0;  4Q4Y 4;  1VBD 4;  4RHV 4; 
#chains in the Genus database with same CATH homology
 1RUD 4;  3JBG 4;  2X5I D;  1VBE 4;  1AR9 4;  1VBA 4;  1RUH 4;  1RUI 4;  1VBC 4;  1RUF 4;  4Q4V 4;  1EV1 4;  1EAH 4;  1RUC 4;  2RR1 4;  4PDW D;  1R09 4;  1MQT D;  1HXS 4;  2HWB 4;  2R06 4;  1AL2 4;  1RMU 4;  1VBB 4;  1RUE 4;  2RS3 4;  1HRV 4;  2RS1 4;  1BEV 4;  2RMU 4;  1OOP D;  1K5M D;  1AR6 4;  1AR8 4;  1RUG 4;  1PO1 4;  4Q4W 4;  1H8T D;  1PO2 4;  2R04 4;  2R07 4;  4GB3 4;  1RVF 4;  1NCQ D;  1NA1 D;  1ASJ 4;  1HRI 4;  1R08 4;  4Q4Y 4;  1PVC 4;  1RUJ 4;  1AR7 4;  1Z7S 4;  1VBD 4;  4Q4X 4;  1PIV 4;  1D4M 4;  1VRH 4;  1COV 4;  2HWC 4;  1POV 0;  2RM2 4;  2RS5 4;  3J8F 4;  3JD7 4;  1RHI 4;  2PLV 4;  4RHV 4; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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