1PO14

Poliovirus (type 1, mahoney) in complex with r80633, an inhibitor of viral replication
Total Genus 4
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
4
sequence length
68
structure length
62
Chain Sequence
GAQVSSQKVGAHENSSTINYTTINYYRDSASNAASKQDFSQDPSKFTEPIKDVLIKTAPMLN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Virus
publication title Ligand-induced conformational changes in poliovirus-antiviral drug complexes.
pubmed doi rcsb
molecule keywords POLIOVIRUS TYPE 1 MAHONEY
total genus 4
structure length 62
sequence length 68
ec nomenclature ec 2.7.7.48: RNA-directed RNA polymerase.
pdb deposition date 1997-01-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
4 PF02226 Pico_P1A Picornavirus coat protein (VP4)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.80.10 Few Secondary Structures Irregular Rhinovirus 14, subunit 4 Picornavirus coat protein VP4 1po1400
2RS34 1VBD4 2R064 1HXS4 1RMU4 1R084 4PDWD 1AR94 1EV14 1NCQD 1AL24 2HWB4 2RS14 3JD74 1VBE4 4GB34 1RUF4 4Q4X4 1VBC4 1VBB4 1POV0 1RUG4 1RUD4 1VBA4 1PO24 4Q4Y4 1HRV4 1EAH4 1RUI4 1PO14 2R044 2PLV4 2RR14 1PIV4 1RUC4 1NA1D 1OOPD 4RHV4 1AR74 2RS54 1R094 1AR64 1BEV4 1Z7S4 2RM24 3JBG4 4Q4W4 1RUH4 2HWC4 2X5ID 1AR84 1RUE4 2R074 1RVF4 3J8F4 4Q4V4 2RMU4 1VRH4 1HRI4 1D4M4 1H8TD 1COV4 1ASJ4 1PVC4 1MQTD 1RUJ4 1RHI4 1K5MD
chains in the Genus database with same CATH superfamily
1VBD4 3AE7A 3AEDA 1R084 3CIRA 1EV14 2WQYA 3P4PA 1VBC4 1VBB4 1POV0 3SFDA 4Q4Y4 3AEBA 1NENA 1ZP0A 2B76A 1XHXA 4KX6A 1XI1A 3AE2A 1AR64 3JBG4 3VRAA 3AE8A 4Q4W4 1RUH4 3AE5A 2RMU4 1VRH4 3AECA 1D4M4 3P4SA 1COV4 1PVC4 3P4QA 3AE1A 3FI7A 3SUCA 2WDRA 1HXS4 2PW9A 2HWB4 2RS14 1VBE4 1RUF4 2ACZA 3SFEA 1VBA4 1PO24 2H88A 1HRV4 1RUI4 2PZSA 1RUC4 4YTMA 1NA1D 3AE3A 2WDQA 4YXDA 4RHV4 2H89A 2RS54 1Z7S4 1ZOYA 1BEV4 2PYJA 2WU2A 3AE6A 3AE9A 1AR84 1ASJ4 3P4RA 1KF6A 1AL24 1YQ4A 3AEEA 1RMU4 3AEGA 4YT0A 4PDWD 3VR8A 1AR94 3GQHA 1NCQD 4GB34 1YQ3A 1RUG4 1RUD4 2WP9A 4YTPA 5C2TA 4YSYA 1XHZA 1EAH4 2PYLA 2R044 2PLV4 3VR9A 3AEFA 2R7FA 1OOPD 1NEKA 1KFYA 3VRBA 1AR74 1R094 3ABVA 2FBWA 2HWC4 3J8F4 1RUE4 2R074 4YTNA 1HRI4 1MQTD 2RM24 1RUJ4 1RHI4 2PY5A 2RS34 2R064 4YSXA 3JD74 4Q4X4 1L0VA 3AE4A 4YSZA 2WU5A 1PO14 1PIV4 3GQKA 2WS3A 5C3JA 2X5ID 1RVF4 4Q4V4 2WDVA 1H8TD 3AEAA 2EX3A 2RR14 1K5MD
chains in the Genus database with same CATH topology
2RS34 1VBD4 2R064 1HXS4 1RMU4 1R084 4PDWD 1AR94 1EV14 1NCQD 1AL24 2HWB4 2RS14 3JD74 1VBE4 4GB34 1RUF4 4Q4X4 1VBC4 1VBB4 1POV0 1RUG4 1RUD4 1VBA4 1PO24 4Q4Y4 1HRV4 1EAH4 1RUI4 1PO14 2R044 2PLV4 2RR14 1PIV4 1RUC4 1NA1D 1OOPD 4RHV4 1AR74 2RS54 1R094 1AR64 1BEV4 1Z7S4 2RM24 3JBG4 4Q4W4 1RUH4 2HWC4 2X5ID 1AR84 1RUE4 2R074 1RVF4 3J8F4 4Q4V4 2RMU4 1VRH4 1HRI4 1D4M4 1H8TD 1COV4 1ASJ4 1PVC4 1MQTD 1RUJ4 1RHI4 1K5MD
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2RS3 4;  1VBD 4;  2R06 4;  1HXS 4;  1RMU 4;  1R08 4;  4PDW D;  1AR9 4;  1EV1 4;  1NCQ D;  1AL2 4;  2HWB 4;  2RS1 4;  3JD7 4;  1VBE 4;  4GB3 4;  1RUF 4;  4Q4X 4;  1VBC 4;  1VBB 4;  1POV 0;  1RUG 4;  1RUD 4;  1VBA 4;  1PO2 4;  4Q4Y 4;  1HRV 4;  1EAH 4;  1RUI 4;  1PO1 4;  2R04 4;  2PLV 4;  2RR1 4;  1PIV 4;  1RUC 4;  1NA1 D;  1OOP D;  4RHV 4;  1AR7 4;  2RS5 4;  1R09 4;  1AR6 4;  1BEV 4;  1Z7S 4;  2RM2 4;  3JBG 4;  4Q4W 4;  1RUH 4;  2HWC 4;  2X5I D;  1AR8 4;  1RUE 4;  2R07 4;  1RVF 4;  3J8F 4;  4Q4V 4;  2RMU 4;  1VRH 4;  1HRI 4;  1D4M 4;  1H8T D;  1COV 4;  1ASJ 4;  1PVC 4;  1MQT D;  1RUJ 4;  1RHI 4;  1K5M D; 
#chains in the Genus database with same CATH topology
 1VBD 4;  3AE7 A;  3AED A;  1R08 4;  3CIR A;  1EV1 4;  2WQY A;  3P4P A;  1VBC 4;  1VBB 4;  1POV 0;  3SFD A;  4Q4Y 4;  3AEB A;  1NEN A;  1ZP0 A;  2B76 A;  1XHX A;  4KX6 A;  1XI1 A;  3AE2 A;  1AR6 4;  3JBG 4;  3VRA A;  3AE8 A;  4Q4W 4;  1RUH 4;  3AE5 A;  2RMU 4;  1VRH 4;  3AEC A;  1D4M 4;  3P4S A;  1COV 4;  1PVC 4;  3P4Q A;  3AE1 A;  3FI7 A;  3SUC A;  2WDR A;  1HXS 4;  2PW9 A;  2HWB 4;  2RS1 4;  1VBE 4;  1RUF 4;  2ACZ A;  3SFE A;  1VBA 4;  1PO2 4;  2H88 A;  1HRV 4;  1RUI 4;  2PZS A;  1RUC 4;  4YTM A;  1NA1 D;  3AE3 A;  2WDQ A;  4YXD A;  4RHV 4;  2H89 A;  2RS5 4;  1Z7S 4;  1ZOY A;  1BEV 4;  2PYJ A;  2WU2 A;  3AE6 A;  3AE9 A;  1AR8 4;  1ASJ 4;  3P4R A;  1KF6 A;  1AL2 4;  1YQ4 A;  3AEE A;  1RMU 4;  3AEG A;  4YT0 A;  4PDW D;  3VR8 A;  1AR9 4;  3GQH A;  1NCQ D;  4GB3 4;  1YQ3 A;  1RUG 4;  1RUD 4;  2WP9 A;  4YTP A;  5C2T A;  4YSY A;  1XHZ A;  1EAH 4;  2PYL A;  2R04 4;  2PLV 4;  3VR9 A;  3AEF A;  2R7F A;  1OOP D;  1NEK A;  1KFY A;  3VRB A;  1AR7 4;  1R09 4;  3ABV A;  2FBW A;  2HWC 4;  3J8F 4;  1RUE 4;  2R07 4;  4YTN A;  1HRI 4;  1MQT D;  2RM2 4;  1RUJ 4;  1RHI 4;  2PY5 A;  2RS3 4;  2R06 4;  4YSX A;  3JD7 4;  4Q4X 4;  1L0V A;  3AE4 A;  4YSZ A;  2WU5 A;  1PO1 4;  1PIV 4;  3GQK A;  2WS3 A;  5C3J A;  2X5I D;  1RVF 4;  4Q4V 4;  2WDV A;  1H8T D;  3AEA A;  2EX3 A;  2RR1 4;  1K5M D; 
#chains in the Genus database with same CATH homology
 2RS3 4;  1VBD 4;  2R06 4;  1HXS 4;  1RMU 4;  1R08 4;  4PDW D;  1AR9 4;  1EV1 4;  1NCQ D;  1AL2 4;  2HWB 4;  2RS1 4;  3JD7 4;  1VBE 4;  4GB3 4;  1RUF 4;  4Q4X 4;  1VBC 4;  1VBB 4;  1POV 0;  1RUG 4;  1RUD 4;  1VBA 4;  1PO2 4;  4Q4Y 4;  1HRV 4;  1EAH 4;  1RUI 4;  1PO1 4;  2R04 4;  2PLV 4;  2RR1 4;  1PIV 4;  1RUC 4;  1NA1 D;  1OOP D;  4RHV 4;  1AR7 4;  2RS5 4;  1R09 4;  1AR6 4;  1BEV 4;  1Z7S 4;  2RM2 4;  3JBG 4;  4Q4W 4;  1RUH 4;  2HWC 4;  2X5I D;  1AR8 4;  1RUE 4;  2R07 4;  1RVF 4;  3J8F 4;  4Q4V 4;  2RMU 4;  1VRH 4;  1HRI 4;  1D4M 4;  1H8T D;  1COV 4;  1ASJ 4;  1PVC 4;  1MQT D;  1RUJ 4;  1RHI 4;  1K5M D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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