1NA1D

The structure of hrv14 when complexed with pleconaril
Total Genus 2
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
2
sequence length
40
structure length
40
Chain Sequence
INYYKDAASTSSAGQSLSMDPSKFTEPVKDLMLKGAPALN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Virus
molecule keywords Coat protein VP1
publication title Structural and virological studies of the stages of virus replication that are affected by antirhinovirus compounds
pubmed doi rcsb
total genus 2
structure length 40
sequence length 40
ec nomenclature ec 2.7.7.48: RNA-directed RNA polymerase.
pdb deposition date 2002-11-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF02226 Pico_P1A Picornavirus coat protein (VP4)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.80.10 Few Secondary Structures Irregular Rhinovirus 14, subunit 4 Picornavirus coat protein VP4 1na1D00
1R084 4Q4X4 4Q4W4 2RS54 1EV14 1AR64 1EAH4 2R074 1ASJ4 3JD74 1HRV4 1VBE4 2HWB4 1MQTD 3JBG4 4Q4Y4 1RUH4 2RM24 1PIV4 1POV0 1HRI4 1RUG4 2HWC4 1PO14 1VBA4 4PDWD 1VBB4 2RS14 1RHI4 1VRH4 1PVC4 1RUI4 1AR94 2X5ID 1AR74 1RMU4 1H8TD 1RUF4 1NCQD 1VBD4 1PO24 4RHV4 1RUD4 1K5MD 1RUC4 1RVF4 2RS34 1VBC4 1OOPD 1RUJ4 2R064 1HXS4 1R094 2RR14 2R044 4Q4V4 1D4M4 1RUE4 2PLV4 4GB34 1AL24 1COV4 1NA1D 1Z7S4 2RMU4 3J8F4 1BEV4 1AR84
chains in the Genus database with same CATH superfamily
4Q4X4 2PZSA 3AEFA 3SUCA 2RS54 1EAH4 2R074 2WQYA 2WU5A 4YSXA 1VBE4 1MQTD 2R7FA 2WU2A 3P4SA 3VRBA 1HRI4 1RUG4 2WDVA 4PDWD 3ABVA 3AEGA 1PVC4 1NEKA 1ZOYA 2H89A 1RMU4 1RUF4 4YSZA 1VBD4 4RHV4 1RUD4 3AEAA 2RS34 1VBC4 1OOPD 1RUJ4 1NENA 2R064 1D4M4 3AE4A 1KF6A 1YQ4A 4GB34 1AL24 1Z7S4 2RMU4 2PY5A 3J8F4 1BEV4 4YTMA 3AECA 2R044 3GQHA 3VRAA 3SFEA 1PIV4 3P4PA 3CIRA 1VRH4 2PYLA 1K5MD 1KFYA 3AE3A 2WDRA 5C3JA 3FI7A 1COV4 3AE6A 1R084 2WS3A 1L0VA 4Q4W4 3AE2A 1HRV4 1ASJ4 3AE7A 4Q4Y4 2PYJA 2WDQA 2RM24 3AEDA 1POV0 3SFDA 1PO14 3VR8A 2RS14 1RHI4 3AE5A 3AE9A 1AR94 2X5ID 1AR74 3P4RA 1XI1A 1NCQD 3GQKA 1PO24 1HXS4 2RR14 1YQ3A 1RUE4 1ZP0A 2PW9A 3AE1A 2H88A 1XHXA 3VR9A 4YSYA 2FBWA 3AE8A 1EV14 1AR64 3AEEA 3JD74 2HWB4 3JBG4 1XHZA 1RUH4 2HWC4 1VBA4 2EX3A 1VBB4 4YXDA 1RUI4 2ACZA 1H8TD 1RVF4 1RUC4 4KX6A 1R094 5C2TA 3P4QA 4Q4V4 4YT0A 2PLV4 2B76A 3AEBA 4YTPA 1NA1D 4YTNA 2WP9A 1AR84
chains in the Genus database with same CATH topology
1R084 4Q4X4 4Q4W4 2RS54 1EV14 1AR64 1EAH4 2R074 1ASJ4 3JD74 1HRV4 1VBE4 2HWB4 1MQTD 3JBG4 4Q4Y4 1RUH4 2RM24 1PIV4 1POV0 1HRI4 1RUG4 2HWC4 1PO14 1VBA4 4PDWD 1VBB4 2RS14 1RHI4 1VRH4 1PVC4 1RUI4 1AR94 2X5ID 1AR74 1RMU4 1H8TD 1RUF4 1NCQD 1VBD4 1PO24 4RHV4 1RUD4 1K5MD 1RUC4 1RVF4 2RS34 1VBC4 1OOPD 1RUJ4 2R064 1HXS4 1R094 2RR14 2R044 4Q4V4 1D4M4 1RUE4 2PLV4 4GB34 1AL24 1COV4 1NA1D 1Z7S4 2RMU4 3J8F4 1BEV4 1AR84
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1R08 4;  4Q4X 4;  4Q4W 4;  2RS5 4;  1EV1 4;  1AR6 4;  1EAH 4;  2R07 4;  1ASJ 4;  3JD7 4;  1HRV 4;  1VBE 4;  2HWB 4;  1MQT D;  3JBG 4;  4Q4Y 4;  1RUH 4;  2RM2 4;  1PIV 4;  1POV 0;  1HRI 4;  1RUG 4;  2HWC 4;  1PO1 4;  1VBA 4;  4PDW D;  1VBB 4;  2RS1 4;  1RHI 4;  1VRH 4;  1PVC 4;  1RUI 4;  1AR9 4;  2X5I D;  1AR7 4;  1RMU 4;  1H8T D;  1RUF 4;  1NCQ D;  1VBD 4;  1PO2 4;  4RHV 4;  1RUD 4;  1K5M D;  1RUC 4;  1RVF 4;  2RS3 4;  1VBC 4;  1OOP D;  1RUJ 4;  2R06 4;  1HXS 4;  1R09 4;  2RR1 4;  2R04 4;  4Q4V 4;  1D4M 4;  1RUE 4;  2PLV 4;  4GB3 4;  1AL2 4;  1COV 4;  1NA1 D;  1Z7S 4;  2RMU 4;  3J8F 4;  1BEV 4;  1AR8 4; 
#chains in the Genus database with same CATH topology
 4Q4X 4;  2PZS A;  3AEF A;  3SUC A;  2RS5 4;  1EAH 4;  2R07 4;  2WQY A;  2WU5 A;  4YSX A;  1VBE 4;  1MQT D;  2R7F A;  2WU2 A;  3P4S A;  3VRB A;  1HRI 4;  1RUG 4;  2WDV A;  4PDW D;  3ABV A;  3AEG A;  1PVC 4;  1NEK A;  1ZOY A;  2H89 A;  1RMU 4;  1RUF 4;  4YSZ A;  1VBD 4;  4RHV 4;  1RUD 4;  3AEA A;  2RS3 4;  1VBC 4;  1OOP D;  1RUJ 4;  1NEN A;  2R06 4;  1D4M 4;  3AE4 A;  1KF6 A;  1YQ4 A;  4GB3 4;  1AL2 4;  1Z7S 4;  2RMU 4;  2PY5 A;  3J8F 4;  1BEV 4;  4YTM A;  3AEC A;  2R04 4;  3GQH A;  3VRA A;  3SFE A;  1PIV 4;  3P4P A;  3CIR A;  1VRH 4;  2PYL A;  1K5M D;  1KFY A;  3AE3 A;  2WDR A;  5C3J A;  3FI7 A;  1COV 4;  3AE6 A;  1R08 4;  2WS3 A;  1L0V A;  4Q4W 4;  3AE2 A;  1HRV 4;  1ASJ 4;  3AE7 A;  4Q4Y 4;  2PYJ A;  2WDQ A;  2RM2 4;  3AED A;  1POV 0;  3SFD A;  1PO1 4;  3VR8 A;  2RS1 4;  1RHI 4;  3AE5 A;  3AE9 A;  1AR9 4;  2X5I D;  1AR7 4;  3P4R A;  1XI1 A;  1NCQ D;  3GQK A;  1PO2 4;  1HXS 4;  2RR1 4;  1YQ3 A;  1RUE 4;  1ZP0 A;  2PW9 A;  3AE1 A;  2H88 A;  1XHX A;  3VR9 A;  4YSY A;  2FBW A;  3AE8 A;  1EV1 4;  1AR6 4;  3AEE A;  3JD7 4;  2HWB 4;  3JBG 4;  1XHZ A;  1RUH 4;  2HWC 4;  1VBA 4;  2EX3 A;  1VBB 4;  4YXD A;  1RUI 4;  2ACZ A;  1H8T D;  1RVF 4;  1RUC 4;  4KX6 A;  1R09 4;  5C2T A;  3P4Q A;  4Q4V 4;  4YT0 A;  2PLV 4;  2B76 A;  3AEB A;  4YTP A;  1NA1 D;  4YTN A;  2WP9 A;  1AR8 4; 
#chains in the Genus database with same CATH homology
 1R08 4;  4Q4X 4;  4Q4W 4;  2RS5 4;  1EV1 4;  1AR6 4;  1EAH 4;  2R07 4;  1ASJ 4;  3JD7 4;  1HRV 4;  1VBE 4;  2HWB 4;  1MQT D;  3JBG 4;  4Q4Y 4;  1RUH 4;  2RM2 4;  1PIV 4;  1POV 0;  1HRI 4;  1RUG 4;  2HWC 4;  1PO1 4;  1VBA 4;  4PDW D;  1VBB 4;  2RS1 4;  1RHI 4;  1VRH 4;  1PVC 4;  1RUI 4;  1AR9 4;  2X5I D;  1AR7 4;  1RMU 4;  1H8T D;  1RUF 4;  1NCQ D;  1VBD 4;  1PO2 4;  4RHV 4;  1RUD 4;  1K5M D;  1RUC 4;  1RVF 4;  2RS3 4;  1VBC 4;  1OOP D;  1RUJ 4;  2R06 4;  1HXS 4;  1R09 4;  2RR1 4;  2R04 4;  4Q4V 4;  1D4M 4;  1RUE 4;  2PLV 4;  4GB3 4;  1AL2 4;  1COV 4;  1NA1 D;  1Z7S 4;  2RMU 4;  3J8F 4;  1BEV 4;  1AR8 4; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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