2HWB4

A comparison of the anti-rhinoviral drug binding pocket in hrv14 and hrv1a
Total Genus 2
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
2
sequence length
40
structure length
40
Chain Sequence
INYYKDAASTSSAGQSLSMDPSKFTEPVKDLMLKGAPALN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Virus
molecule keywords HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1)
publication title A comparison of the anti-rhinoviral drug binding pocket in HRV14 and HRV1A.
pubmed doi rcsb
source organism Human rhinovirus 14
total genus 2
structure length 40
sequence length 40
ec nomenclature ec 2.7.7.48: RNA-directed RNA polymerase.
pdb deposition date 1994-01-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
4 PF02226 Pico_P1A Picornavirus coat protein (VP4)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.80.10 Few Secondary Structures Irregular Rhinovirus 14, subunit 4 Picornavirus coat protein VP4 2hwb400
1VBD4 1NA1D 1RVF4 1AR74 2R074 1VBE4 1POV0 1VBC4 2RR14 2R044 1RMU4 1AR64 1EV14 1NCQD 1AR84 1RUD4 2RS54 4Q4X4 1AL24 1EAH4 2R064 1R094 4RHV4 1ASJ4 1D4M4 1AR94 1HRI4 1PO24 1RUE4 1RUH4 1RUG4 1BEV4 1H8TD 2RS34 2RS14 1PVC4 4Q4V4 1RUJ4 4GB34 2HWC4 1COV4 1RUI4 1HRV4 3JD74 1OOPD 1RUF4 1VBB4 2X5ID 1VBA4 2PLV4 3J8F4 4Q4W4 1Z7S4 1K5MD 1RUC4 3JBG4 1PIV4 1RHI4 2HWB4 2RM24 1VRH4 4Q4Y4 1MQTD 1HXS4 1PO14 1R084 4PDWD 2RMU4
chains in the Genus database with same CATH superfamily
1VBD4 2RR14 4YT0A 1NEKA 3AEDA 1AL24 4RHV4 1XHXA 1R094 1D4M4 1AR94 4YSXA 3ABVA 1PO24 1BEV4 2R7FA 3AEGA 3VR8A 1PVC4 2HWC4 1COV4 1RUI4 1HRV4 3JD74 1Z7S4 3VRAA 4YSZA 1XHZA 1L0VA 1YQ4A 3P4QA 2B76A 2RM24 3SFEA 5C2TA 2PZSA 3AE4A 1RVF4 1AR74 1KFYA 1VBE4 1VBC4 1EV14 1NCQD 1AR84 1RUD4 3AECA 4YTMA 1ASJ4 2PY5A 1HRI4 3AE6A 3AE1A 2RS34 2RS14 2PYLA 3P4PA 1OOPD 1RUF4 1VBA4 3GQHA 3J8F4 1RUC4 3JBG4 1PIV4 1YQ3A 1MQTD 1HXS4 1PO14 1RUG4 4Q4Y4 4PDWD 2PW9A 2RMU4 2WQYA 2WU2A 4YTNA 1RMU4 1AR64 3P4SA 1EAH4 3VRBA 1RUE4 3P4RA 3VR9A 2EX3A 4Q4V4 4GB34 2X5ID 2PLV4 4Q4W4 1K5MD 2PYJA 3AEEA 2WP9A 2H89A 1VRH4 3AE9A 2ACZA 1R084 1XI1A 2FBWA 1NA1D 2WDRA 2R074 1POV0 2R044 2RS54 4Q4X4 2R064 3AE7A 3SFDA 4KX6A 3AE2A 3AEBA 1RUH4 1H8TD 3AE5A 1ZP0A 1RUJ4 4YSYA 2WDVA 1KF6A 3AE3A 3FI7A 1VBB4 2WS3A 2WDQA 3SUCA 2WU5A 5C3JA 1RHI4 2H88A 4YTPA 1NENA 2HWB4 4YXDA 3AE8A 3GQKA 3AEFA 3AEAA 3CIRA 1ZOYA
chains in the Genus database with same CATH topology
1VBD4 1NA1D 1RVF4 1AR74 2R074 1VBE4 1POV0 1VBC4 2RR14 2R044 1RMU4 1AR64 1EV14 1NCQD 1AR84 1RUD4 2RS54 4Q4X4 1AL24 1EAH4 2R064 1R094 4RHV4 1ASJ4 1D4M4 1AR94 1HRI4 1PO24 1RUE4 1RUH4 1RUG4 1BEV4 1H8TD 2RS34 2RS14 1PVC4 4Q4V4 1RUJ4 4GB34 2HWC4 1COV4 1RUI4 1HRV4 3JD74 1OOPD 1RUF4 1VBB4 2X5ID 1VBA4 2PLV4 3J8F4 4Q4W4 1Z7S4 1K5MD 1RUC4 3JBG4 1PIV4 1RHI4 2HWB4 2RM24 1VRH4 4Q4Y4 1MQTD 1HXS4 1PO14 1R084 4PDWD 2RMU4
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1VBD 4;  1NA1 D;  1RVF 4;  1AR7 4;  2R07 4;  1VBE 4;  1POV 0;  1VBC 4;  2RR1 4;  2R04 4;  1RMU 4;  1AR6 4;  1EV1 4;  1NCQ D;  1AR8 4;  1RUD 4;  2RS5 4;  4Q4X 4;  1AL2 4;  1EAH 4;  2R06 4;  1R09 4;  4RHV 4;  1ASJ 4;  1D4M 4;  1AR9 4;  1HRI 4;  1PO2 4;  1RUE 4;  1RUH 4;  1RUG 4;  1BEV 4;  1H8T D;  2RS3 4;  2RS1 4;  1PVC 4;  4Q4V 4;  1RUJ 4;  4GB3 4;  2HWC 4;  1COV 4;  1RUI 4;  1HRV 4;  3JD7 4;  1OOP D;  1RUF 4;  1VBB 4;  2X5I D;  1VBA 4;  2PLV 4;  3J8F 4;  4Q4W 4;  1Z7S 4;  1K5M D;  1RUC 4;  3JBG 4;  1PIV 4;  1RHI 4;  2HWB 4;  2RM2 4;  1VRH 4;  4Q4Y 4;  1MQT D;  1HXS 4;  1PO1 4;  1R08 4;  4PDW D;  2RMU 4; 
#chains in the Genus database with same CATH topology
 1VBD 4;  2RR1 4;  4YT0 A;  1NEK A;  3AED A;  1AL2 4;  4RHV 4;  1XHX A;  1R09 4;  1D4M 4;  1AR9 4;  4YSX A;  3ABV A;  1PO2 4;  1BEV 4;  2R7F A;  3AEG A;  3VR8 A;  1PVC 4;  2HWC 4;  1COV 4;  1RUI 4;  1HRV 4;  3JD7 4;  1Z7S 4;  3VRA A;  4YSZ A;  1XHZ A;  1L0V A;  1YQ4 A;  3P4Q A;  2B76 A;  2RM2 4;  3SFE A;  5C2T A;  2PZS A;  3AE4 A;  1RVF 4;  1AR7 4;  1KFY A;  1VBE 4;  1VBC 4;  1EV1 4;  1NCQ D;  1AR8 4;  1RUD 4;  3AEC A;  4YTM A;  1ASJ 4;  2PY5 A;  1HRI 4;  3AE6 A;  3AE1 A;  2RS3 4;  2RS1 4;  2PYL A;  3P4P A;  1OOP D;  1RUF 4;  1VBA 4;  3GQH A;  3J8F 4;  1RUC 4;  3JBG 4;  1PIV 4;  1YQ3 A;  1MQT D;  1HXS 4;  1PO1 4;  1RUG 4;  4Q4Y 4;  4PDW D;  2PW9 A;  2RMU 4;  2WQY A;  2WU2 A;  4YTN A;  1RMU 4;  1AR6 4;  3P4S A;  1EAH 4;  3VRB A;  1RUE 4;  3P4R A;  3VR9 A;  2EX3 A;  4Q4V 4;  4GB3 4;  2X5I D;  2PLV 4;  4Q4W 4;  1K5M D;  2PYJ A;  3AEE A;  2WP9 A;  2H89 A;  1VRH 4;  3AE9 A;  2ACZ A;  1R08 4;  1XI1 A;  2FBW A;  1NA1 D;  2WDR A;  2R07 4;  1POV 0;  2R04 4;  2RS5 4;  4Q4X 4;  2R06 4;  3AE7 A;  3SFD A;  4KX6 A;  3AE2 A;  3AEB A;  1RUH 4;  1H8T D;  3AE5 A;  1ZP0 A;  1RUJ 4;  4YSY A;  2WDV A;  1KF6 A;  3AE3 A;  3FI7 A;  1VBB 4;  2WS3 A;  2WDQ A;  3SUC A;  2WU5 A;  5C3J A;  1RHI 4;  2H88 A;  4YTP A;  1NEN A;  2HWB 4;  4YXD A;  3AE8 A;  3GQK A;  3AEF A;  3AEA A;  3CIR A;  1ZOY A; 
#chains in the Genus database with same CATH homology
 1VBD 4;  1NA1 D;  1RVF 4;  1AR7 4;  2R07 4;  1VBE 4;  1POV 0;  1VBC 4;  2RR1 4;  2R04 4;  1RMU 4;  1AR6 4;  1EV1 4;  1NCQ D;  1AR8 4;  1RUD 4;  2RS5 4;  4Q4X 4;  1AL2 4;  1EAH 4;  2R06 4;  1R09 4;  4RHV 4;  1ASJ 4;  1D4M 4;  1AR9 4;  1HRI 4;  1PO2 4;  1RUE 4;  1RUH 4;  1RUG 4;  1BEV 4;  1H8T D;  2RS3 4;  2RS1 4;  1PVC 4;  4Q4V 4;  1RUJ 4;  4GB3 4;  2HWC 4;  1COV 4;  1RUI 4;  1HRV 4;  3JD7 4;  1OOP D;  1RUF 4;  1VBB 4;  2X5I D;  1VBA 4;  2PLV 4;  3J8F 4;  4Q4W 4;  1Z7S 4;  1K5M D;  1RUC 4;  3JBG 4;  1PIV 4;  1RHI 4;  2HWB 4;  2RM2 4;  1VRH 4;  4Q4Y 4;  1MQT D;  1HXS 4;  1PO1 4;  1R08 4;  4PDW D;  2RMU 4; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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