1RUD4

Rhinovirus 14 mutant n1105s complexed with antiviral compound win 52084
Total Genus 2
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
2
sequence length
40
structure length
40
Chain Sequence
INYYKDAASTSSAGQSLSMDPSKFTEPVKDLMLKGAPALN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Virus
molecule keywords RHINOVIRUS 14
publication title Structural studies on human rhinovirus 14 drug-resistant compensation mutants.
pubmed doi rcsb
source organism Human rhinovirus 14
total genus 2
structure length 40
sequence length 40
ec nomenclature ec 2.7.7.48: RNA-directed RNA polymerase.
pdb deposition date 1995-06-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
4 PF02226 Pico_P1A Picornavirus coat protein (VP4)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.80.10 Few Secondary Structures Irregular Rhinovirus 14, subunit 4 Picornavirus coat protein VP4 1rud400
1AR64 1RUD4 1K5MD 1VBD4 1RUG4 1EAH4 2HWC4 3JBG4 2PLV4 1VBE4 1R094 1BEV4 1RUJ4 1RVF4 2R074 1POV0 1PVC4 2RM24 1AR84 1H8TD 1PO24 1VBA4 1VBC4 1VRH4 3JD74 2RMU4 2RS54 1HRI4 1COV4 1ASJ4 1EV14 1PO14 2R064 4Q4V4 4RHV4 1HRV4 2HWB4 1RHI4 1R084 1RUE4 4Q4X4 1Z7S4 1NCQD 1HXS4 2RR14 4PDWD 1NA1D 1RUH4 1RUC4 4Q4W4 4Q4Y4 1RMU4 2R044 2RS34 1AR74 1VBB4 1D4M4 1RUI4 3J8F4 1AR94 2X5ID 4GB34 1RUF4 1OOPD 1AL24 1PIV4 1MQTD 2RS14
chains in the Genus database with same CATH superfamily
1KFYA 1ZOYA 2WU5A 2PLV4 3AEAA 3CIRA 1R094 2B76A 2FBWA 4YTPA 2RM24 1VBC4 3AE6A 1VRH4 1HRI4 1ASJ4 2H88A 1HRV4 4YSYA 4Q4X4 1YQ4A 4YSXA 2WDRA 2WS3A 4Q4Y4 4Q4W4 2PZSA 2WP9A 1AR94 1RUF4 3AEGA 2WQYA 1NENA 3SFEA 1AR64 1RUD4 1VBD4 1EAH4 2HWC4 2WDQA 3JBG4 3AEFA 4YT0A 2EX3A 1RUJ4 1RVF4 1PVC4 1AR84 1H8TD 1PO24 1VBA4 3P4RA 3AE9A 3VRBA 3AEBA 2RMU4 2RS54 3ABVA 1COV4 2PW9A 4Q4V4 4RHV4 3FI7A 1NEKA 1RHI4 1RUE4 1Z7S4 1NCQD 1HXS4 4YXDA 1XHZA 1RUH4 1RUC4 1L0VA 2PYJA 3AE2A 3J8F4 1RUI4 2X5ID 3GQKA 3AECA 2PYLA 3AE5A 3VR8A 1K5MD 3P4SA 4KX6A 1ZP0A 2H89A 3P4QA 4YTMA 1BEV4 1YQ3A 1PO14 2ACZA 2R064 1XI1A 5C2TA 5C3JA 2WU2A 3AE7A 2RS34 1AR74 1VBB4 1D4M4 3GQHA 3AE1A 4GB34 1PIV4 1MQTD 3VRAA 4YSZA 1RUG4 2PY5A 3P4PA 1VBE4 3AE8A 3SFDA 2R074 1POV0 3SUCA 3AEDA 3JD74 4YTNA 1EV14 3VR9A 2HWB4 1R084 3AEEA 3AE3A 1XHXA 3AE4A 2RR14 4PDWD 1NA1D 1RMU4 2R044 2WDVA 1KF6A 2R7FA 1OOPD 1AL24 2RS14
chains in the Genus database with same CATH topology
1AR64 1RUD4 1K5MD 1VBD4 1RUG4 1EAH4 2HWC4 3JBG4 2PLV4 1VBE4 1R094 1BEV4 1RUJ4 1RVF4 2R074 1POV0 1PVC4 2RM24 1AR84 1H8TD 1PO24 1VBA4 1VBC4 1VRH4 3JD74 2RMU4 2RS54 1HRI4 1COV4 1ASJ4 1EV14 1PO14 2R064 4Q4V4 4RHV4 1HRV4 2HWB4 1RHI4 1R084 1RUE4 4Q4X4 1Z7S4 1NCQD 1HXS4 2RR14 4PDWD 1NA1D 1RUH4 1RUC4 4Q4W4 4Q4Y4 1RMU4 2R044 2RS34 1AR74 1VBB4 1D4M4 1RUI4 3J8F4 1AR94 2X5ID 4GB34 1RUF4 1OOPD 1AL24 1PIV4 1MQTD 2RS14
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1AR6 4;  1RUD 4;  1K5M D;  1VBD 4;  1RUG 4;  1EAH 4;  2HWC 4;  3JBG 4;  2PLV 4;  1VBE 4;  1R09 4;  1BEV 4;  1RUJ 4;  1RVF 4;  2R07 4;  1POV 0;  1PVC 4;  2RM2 4;  1AR8 4;  1H8T D;  1PO2 4;  1VBA 4;  1VBC 4;  1VRH 4;  3JD7 4;  2RMU 4;  2RS5 4;  1HRI 4;  1COV 4;  1ASJ 4;  1EV1 4;  1PO1 4;  2R06 4;  4Q4V 4;  4RHV 4;  1HRV 4;  2HWB 4;  1RHI 4;  1R08 4;  1RUE 4;  4Q4X 4;  1Z7S 4;  1NCQ D;  1HXS 4;  2RR1 4;  4PDW D;  1NA1 D;  1RUH 4;  1RUC 4;  4Q4W 4;  4Q4Y 4;  1RMU 4;  2R04 4;  2RS3 4;  1AR7 4;  1VBB 4;  1D4M 4;  1RUI 4;  3J8F 4;  1AR9 4;  2X5I D;  4GB3 4;  1RUF 4;  1OOP D;  1AL2 4;  1PIV 4;  1MQT D;  2RS1 4; 
#chains in the Genus database with same CATH topology
 1KFY A;  1ZOY A;  2WU5 A;  2PLV 4;  3AEA A;  3CIR A;  1R09 4;  2B76 A;  2FBW A;  4YTP A;  2RM2 4;  1VBC 4;  3AE6 A;  1VRH 4;  1HRI 4;  1ASJ 4;  2H88 A;  1HRV 4;  4YSY A;  4Q4X 4;  1YQ4 A;  4YSX A;  2WDR A;  2WS3 A;  4Q4Y 4;  4Q4W 4;  2PZS A;  2WP9 A;  1AR9 4;  1RUF 4;  3AEG A;  2WQY A;  1NEN A;  3SFE A;  1AR6 4;  1RUD 4;  1VBD 4;  1EAH 4;  2HWC 4;  2WDQ A;  3JBG 4;  3AEF A;  4YT0 A;  2EX3 A;  1RUJ 4;  1RVF 4;  1PVC 4;  1AR8 4;  1H8T D;  1PO2 4;  1VBA 4;  3P4R A;  3AE9 A;  3VRB A;  3AEB A;  2RMU 4;  2RS5 4;  3ABV A;  1COV 4;  2PW9 A;  4Q4V 4;  4RHV 4;  3FI7 A;  1NEK A;  1RHI 4;  1RUE 4;  1Z7S 4;  1NCQ D;  1HXS 4;  4YXD A;  1XHZ A;  1RUH 4;  1RUC 4;  1L0V A;  2PYJ A;  3AE2 A;  3J8F 4;  1RUI 4;  2X5I D;  3GQK A;  3AEC A;  2PYL A;  3AE5 A;  3VR8 A;  1K5M D;  3P4S A;  4KX6 A;  1ZP0 A;  2H89 A;  3P4Q A;  4YTM A;  1BEV 4;  1YQ3 A;  1PO1 4;  2ACZ A;  2R06 4;  1XI1 A;  5C2T A;  5C3J A;  2WU2 A;  3AE7 A;  2RS3 4;  1AR7 4;  1VBB 4;  1D4M 4;  3GQH A;  3AE1 A;  4GB3 4;  1PIV 4;  1MQT D;  3VRA A;  4YSZ A;  1RUG 4;  2PY5 A;  3P4P A;  1VBE 4;  3AE8 A;  3SFD A;  2R07 4;  1POV 0;  3SUC A;  3AED A;  3JD7 4;  4YTN A;  1EV1 4;  3VR9 A;  2HWB 4;  1R08 4;  3AEE A;  3AE3 A;  1XHX A;  3AE4 A;  2RR1 4;  4PDW D;  1NA1 D;  1RMU 4;  2R04 4;  2WDV A;  1KF6 A;  2R7F A;  1OOP D;  1AL2 4;  2RS1 4; 
#chains in the Genus database with same CATH homology
 1AR6 4;  1RUD 4;  1K5M D;  1VBD 4;  1RUG 4;  1EAH 4;  2HWC 4;  3JBG 4;  2PLV 4;  1VBE 4;  1R09 4;  1BEV 4;  1RUJ 4;  1RVF 4;  2R07 4;  1POV 0;  1PVC 4;  2RM2 4;  1AR8 4;  1H8T D;  1PO2 4;  1VBA 4;  1VBC 4;  1VRH 4;  3JD7 4;  2RMU 4;  2RS5 4;  1HRI 4;  1COV 4;  1ASJ 4;  1EV1 4;  1PO1 4;  2R06 4;  4Q4V 4;  4RHV 4;  1HRV 4;  2HWB 4;  1RHI 4;  1R08 4;  1RUE 4;  4Q4X 4;  1Z7S 4;  1NCQ D;  1HXS 4;  2RR1 4;  4PDW D;  1NA1 D;  1RUH 4;  1RUC 4;  4Q4W 4;  4Q4Y 4;  1RMU 4;  2R04 4;  2RS3 4;  1AR7 4;  1VBB 4;  1D4M 4;  1RUI 4;  3J8F 4;  1AR9 4;  2X5I D;  4GB3 4;  1RUF 4;  1OOP D;  1AL2 4;  1PIV 4;  1MQT D;  2RS1 4; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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