1RUG4

Rhinovirus 14 mutant n1219s complexed with antiviral compound win 52035
Total Genus 2
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
2
sequence length
40
structure length
40
Chain Sequence
INYYKDAASTSSAGQSLSMDPSKFTEPVKDLMLKGAPALN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Virus
molecule keywords RHINOVIRUS 14
publication title Structural studies on human rhinovirus 14 drug-resistant compensation mutants.
pubmed doi rcsb
source organism Human rhinovirus 14
total genus 2
structure length 40
sequence length 40
ec nomenclature ec 2.7.7.48: RNA-directed RNA polymerase.
pdb deposition date 1995-06-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
4 PF02226 Pico_P1A Picornavirus coat protein (VP4)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.80.10 Few Secondary Structures Irregular Rhinovirus 14, subunit 4 Picornavirus coat protein VP4 1rug400
1R084 1HXS4 1R094 3J8F4 1D4M4 1NA1D 2HWB4 2PLV4 1Z7S4 1AR94 1ASJ4 1POV0 4RHV4 1NCQD 1PVC4 1RVF4 1EV14 2R074 1RUH4 1PO14 1HRV4 1K5MD 1VBB4 1VBA4 2R064 1RUF4 2RS14 1RUE4 1EAH4 3JD74 1RUD4 1RUC4 2X5ID 4PDWD 1VRH4 4Q4W4 1PIV4 1VBE4 1VBC4 1AR64 1RHI4 1RUG4 1VBD4 2RMU4 1RMU4 2RR14 2RS54 1OOPD 1PO24 4GB34 4Q4Y4 1MQTD 1AR74 1RUJ4 1HRI4 1AL24 2HWC4 4Q4X4 3JBG4 1AR84 1COV4 1RUI4 2R044 2RS34 4Q4V4 1BEV4 1H8TD 2RM24
chains in the Genus database with same CATH superfamily
1R094 1HXS4 1ZOYA 2PLV4 1ZP0A 4RHV4 1RVF4 3AECA 3GQKA 1VBB4 1VBA4 3AEDA 3JD74 2R7FA 2X5ID 3VRAA 5C2TA 1PIV4 1VBE4 3SUCA 1VBD4 3VR9A 2PY5A 1RMU4 4YTNA 3VR8A 3SFDA 1KFYA 4GB34 3AE2A 2H89A 4YTPA 3AEBA 4KX6A 2WU5A 2RR14 1R084 2HWB4 1XI1A 4YTMA 1AR94 1ASJ4 1POV0 2H88A 3P4RA 1EV14 1RUH4 2WP9A 2R064 1RUE4 3AEAA 1RUD4 3AE5A 2PYLA 4PDWD 4YSXA 1NENA 2WS3A 2PZSA 3P4SA 1VBC4 1RHI4 2RMU4 2RS54 2PYJA 1MQTD 4Q4X4 3JBG4 1AR84 1COV4 2RS34 2EX3A 1XHXA 1H8TD 2RM24 3ABVA 3J8F4 1L0VA 3AE4A 3AEGA 1KF6A 3AE3A 2WDRA 1NCQD 1PVC4 2WQYA 1HRV4 1K5MD 1RUF4 2RS14 3FI7A 1RUC4 3GQHA 4Q4W4 3AE6A 4YT0A 2WDVA 3SFEA 3AE7A 3AEFA 4Q4Y4 2WDQA 2HWC4 1HRI4 1AL24 1XHZA 1RUI4 5C3JA 1BEV4 3AE1A 4YSYA 3AE9A 3P4QA 1D4M4 1NA1D 1Z7S4 2B76A 4YXDA 3AEEA 2R074 1PO14 4YSZA 1YQ3A 1EAH4 3AE8A 1YQ4A 1VRH4 2ACZA 3VRBA 1AR64 1RUG4 2WU2A 1OOPD 1PO24 3P4PA 1AR74 1NEKA 1RUJ4 3CIRA 2PW9A 2R044 4Q4V4 2FBWA
chains in the Genus database with same CATH topology
1R084 1HXS4 1R094 3J8F4 1D4M4 1NA1D 2HWB4 2PLV4 1Z7S4 1AR94 1ASJ4 1POV0 4RHV4 1NCQD 1PVC4 1RVF4 1EV14 2R074 1RUH4 1PO14 1HRV4 1K5MD 1VBB4 1VBA4 2R064 1RUF4 2RS14 1RUE4 1EAH4 3JD74 1RUD4 1RUC4 2X5ID 4PDWD 1VRH4 4Q4W4 1PIV4 1VBE4 1VBC4 1AR64 1RHI4 1RUG4 1VBD4 2RMU4 1RMU4 2RR14 2RS54 1OOPD 1PO24 4GB34 4Q4Y4 1MQTD 1AR74 1RUJ4 1HRI4 1AL24 2HWC4 4Q4X4 3JBG4 1AR84 1COV4 1RUI4 2R044 2RS34 4Q4V4 1BEV4 1H8TD 2RM24
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1R08 4;  1HXS 4;  1R09 4;  3J8F 4;  1D4M 4;  1NA1 D;  2HWB 4;  2PLV 4;  1Z7S 4;  1AR9 4;  1ASJ 4;  1POV 0;  4RHV 4;  1NCQ D;  1PVC 4;  1RVF 4;  1EV1 4;  2R07 4;  1RUH 4;  1PO1 4;  1HRV 4;  1K5M D;  1VBB 4;  1VBA 4;  2R06 4;  1RUF 4;  2RS1 4;  1RUE 4;  1EAH 4;  3JD7 4;  1RUD 4;  1RUC 4;  2X5I D;  4PDW D;  1VRH 4;  4Q4W 4;  1PIV 4;  1VBE 4;  1VBC 4;  1AR6 4;  1RHI 4;  1RUG 4;  1VBD 4;  2RMU 4;  1RMU 4;  2RR1 4;  2RS5 4;  1OOP D;  1PO2 4;  4GB3 4;  4Q4Y 4;  1MQT D;  1AR7 4;  1RUJ 4;  1HRI 4;  1AL2 4;  2HWC 4;  4Q4X 4;  3JBG 4;  1AR8 4;  1COV 4;  1RUI 4;  2R04 4;  2RS3 4;  4Q4V 4;  1BEV 4;  1H8T D;  2RM2 4; 
#chains in the Genus database with same CATH topology
 1R09 4;  1HXS 4;  1ZOY A;  2PLV 4;  1ZP0 A;  4RHV 4;  1RVF 4;  3AEC A;  3GQK A;  1VBB 4;  1VBA 4;  3AED A;  3JD7 4;  2R7F A;  2X5I D;  3VRA A;  5C2T A;  1PIV 4;  1VBE 4;  3SUC A;  1VBD 4;  3VR9 A;  2PY5 A;  1RMU 4;  4YTN A;  3VR8 A;  3SFD A;  1KFY A;  4GB3 4;  3AE2 A;  2H89 A;  4YTP A;  3AEB A;  4KX6 A;  2WU5 A;  2RR1 4;  1R08 4;  2HWB 4;  1XI1 A;  4YTM A;  1AR9 4;  1ASJ 4;  1POV 0;  2H88 A;  3P4R A;  1EV1 4;  1RUH 4;  2WP9 A;  2R06 4;  1RUE 4;  3AEA A;  1RUD 4;  3AE5 A;  2PYL A;  4PDW D;  4YSX A;  1NEN A;  2WS3 A;  2PZS A;  3P4S A;  1VBC 4;  1RHI 4;  2RMU 4;  2RS5 4;  2PYJ A;  1MQT D;  4Q4X 4;  3JBG 4;  1AR8 4;  1COV 4;  2RS3 4;  2EX3 A;  1XHX A;  1H8T D;  2RM2 4;  3ABV A;  3J8F 4;  1L0V A;  3AE4 A;  3AEG A;  1KF6 A;  3AE3 A;  2WDR A;  1NCQ D;  1PVC 4;  2WQY A;  1HRV 4;  1K5M D;  1RUF 4;  2RS1 4;  3FI7 A;  1RUC 4;  3GQH A;  4Q4W 4;  3AE6 A;  4YT0 A;  2WDV A;  3SFE A;  3AE7 A;  3AEF A;  4Q4Y 4;  2WDQ A;  2HWC 4;  1HRI 4;  1AL2 4;  1XHZ A;  1RUI 4;  5C3J A;  1BEV 4;  3AE1 A;  4YSY A;  3AE9 A;  3P4Q A;  1D4M 4;  1NA1 D;  1Z7S 4;  2B76 A;  4YXD A;  3AEE A;  2R07 4;  1PO1 4;  4YSZ A;  1YQ3 A;  1EAH 4;  3AE8 A;  1YQ4 A;  1VRH 4;  2ACZ A;  3VRB A;  1AR6 4;  1RUG 4;  2WU2 A;  1OOP D;  1PO2 4;  3P4P A;  1AR7 4;  1NEK A;  1RUJ 4;  3CIR A;  2PW9 A;  2R04 4;  4Q4V 4;  2FBW A; 
#chains in the Genus database with same CATH homology
 1R08 4;  1HXS 4;  1R09 4;  3J8F 4;  1D4M 4;  1NA1 D;  2HWB 4;  2PLV 4;  1Z7S 4;  1AR9 4;  1ASJ 4;  1POV 0;  4RHV 4;  1NCQ D;  1PVC 4;  1RVF 4;  1EV1 4;  2R07 4;  1RUH 4;  1PO1 4;  1HRV 4;  1K5M D;  1VBB 4;  1VBA 4;  2R06 4;  1RUF 4;  2RS1 4;  1RUE 4;  1EAH 4;  3JD7 4;  1RUD 4;  1RUC 4;  2X5I D;  4PDW D;  1VRH 4;  4Q4W 4;  1PIV 4;  1VBE 4;  1VBC 4;  1AR6 4;  1RHI 4;  1RUG 4;  1VBD 4;  2RMU 4;  1RMU 4;  2RR1 4;  2RS5 4;  1OOP D;  1PO2 4;  4GB3 4;  4Q4Y 4;  1MQT D;  1AR7 4;  1RUJ 4;  1HRI 4;  1AL2 4;  2HWC 4;  4Q4X 4;  3JBG 4;  1AR8 4;  1COV 4;  1RUI 4;  2R04 4;  2RS3 4;  4Q4V 4;  1BEV 4;  1H8T D;  2RM2 4; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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