1RUC4

Rhinovirus 14 mutant n1105s complexed with antiviral compound win 52035
Total Genus 2
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
2
sequence length
40
structure length
40
Chain Sequence
INYYKDAASTSSAGQSLSMDPSKFTEPVKDLMLKGAPALN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Virus
molecule keywords RHINOVIRUS 14
publication title Structural studies on human rhinovirus 14 drug-resistant compensation mutants.
pubmed doi rcsb
source organism Human rhinovirus 14
total genus 2
structure length 40
sequence length 40
ec nomenclature ec 2.7.7.48: RNA-directed RNA polymerase.
pdb deposition date 1995-06-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
4 PF02226 Pico_P1A Picornavirus coat protein (VP4)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.80.10 Few Secondary Structures Irregular Rhinovirus 14, subunit 4 Picornavirus coat protein VP4 1ruc400
1HXS4 2RS54 4GB34 1VBA4 3J8F4 1AR94 3JBG4 2PLV4 4Q4X4 1EAH4 1RHI4 1RMU4 1R084 1H8TD 4RHV4 1RVF4 1HRI4 1NCQD 1R094 1VRH4 1AR74 2RS14 1MQTD 4Q4V4 1HRV4 1VBE4 4PDWD 1VBB4 1AR64 1PO14 1RUD4 1PVC4 1ASJ4 1OOPD 1POV0 1NA1D 3JD74 1RUJ4 1RUF4 2RMU4 2RR14 1RUC4 2R064 1RUI4 1D4M4 2RS34 2R074 2RM24 2R044 1EV14 4Q4Y4 1COV4 2HWB4 1RUE4 1VBD4 2HWC4 2X5ID 1AL24 1AR84 1Z7S4 1VBC4 1PIV4 1BEV4 1PO24 1RUG4 4Q4W4 1RUH4 1K5MD
chains in the Genus database with same CATH superfamily
2B76A 3AE1A 3AEFA 1AR94 2PW9A 3JBG4 1YQ3A 3AE9A 3SFEA 1R084 1H8TD 4RHV4 3VR9A 3SFDA 3AEGA 1VBB4 1RUD4 1ASJ4 3JD74 2RMU4 2EX3A 2R064 3P4SA 1KF6A 3FI7A 2FBWA 3AEDA 3VRAA 2R044 2PY5A 2HWB4 2HWC4 2X5ID 1AL24 1Z7S4 1PIV4 1PO24 3P4PA 1RUG4 3AE5A 1VBA4 1EAH4 1RMU4 4YTMA 1RVF4 1R094 3AE6A 1PVC4 1RUI4 1D4M4 2RS34 2R074 2RM24 3SUCA 3AE8A 1VBC4 1BEV4 1K5MD 5C2TA 1ZP0A 4YTNA 3VR8A 3AE7A 1XHZA 1NEKA 2WDQA 1HRI4 1HRV4 1AR74 2RS14 5C3JA 4YTPA 2PZSA 3AE4A 1AR64 3VRBA 2WDRA 1OOPD 1POV0 1NA1D 2H89A 2WDVA 1RUF4 1RUC4 2WU5A 4YT0A 1RUE4 3AE3A 3P4QA 4YSZA 2WU2A 3AEBA 3P4RA 4Q4W4 1RHI4 1HXS4 2RS54 3J8F4 4GB34 1XI1A 3ABVA 4Q4X4 2PLV4 3AEAA 2PYLA 1YQ4A 2H88A 2WP9A 4YXDA 1NCQD 4Q4V4 1MQTD 1VBE4 4PDWD 3AE2A 3GQHA 1PO14 2WQYA 3AEEA 2ACZA 3GQKA 1XHXA 1RUJ4 4KX6A 2RR14 1KFYA 3CIRA 4YSXA 2PYJA 1EV14 2WS3A 1ZOYA 4Q4Y4 1COV4 1VBD4 3AECA 4YSYA 1AR84 1NENA 2R7FA 1L0VA 1RUH4 1VRH4
chains in the Genus database with same CATH topology
1HXS4 2RS54 4GB34 1VBA4 3J8F4 1AR94 3JBG4 2PLV4 4Q4X4 1EAH4 1RHI4 1RMU4 1R084 1H8TD 4RHV4 1RVF4 1HRI4 1NCQD 1R094 1VRH4 1AR74 2RS14 1MQTD 4Q4V4 1HRV4 1VBE4 4PDWD 1VBB4 1AR64 1PO14 1RUD4 1PVC4 1ASJ4 1OOPD 1POV0 1NA1D 3JD74 1RUJ4 1RUF4 2RMU4 2RR14 1RUC4 2R064 1RUI4 1D4M4 2RS34 2R074 2RM24 2R044 1EV14 4Q4Y4 1COV4 2HWB4 1RUE4 1VBD4 2HWC4 2X5ID 1AL24 1AR84 1Z7S4 1VBC4 1PIV4 1BEV4 1PO24 1RUG4 4Q4W4 1RUH4 1K5MD
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1HXS 4;  2RS5 4;  4GB3 4;  1VBA 4;  3J8F 4;  1AR9 4;  3JBG 4;  2PLV 4;  4Q4X 4;  1EAH 4;  1RHI 4;  1RMU 4;  1R08 4;  1H8T D;  4RHV 4;  1RVF 4;  1HRI 4;  1NCQ D;  1R09 4;  1VRH 4;  1AR7 4;  2RS1 4;  1MQT D;  4Q4V 4;  1HRV 4;  1VBE 4;  4PDW D;  1VBB 4;  1AR6 4;  1PO1 4;  1RUD 4;  1PVC 4;  1ASJ 4;  1OOP D;  1POV 0;  1NA1 D;  3JD7 4;  1RUJ 4;  1RUF 4;  2RMU 4;  2RR1 4;  1RUC 4;  2R06 4;  1RUI 4;  1D4M 4;  2RS3 4;  2R07 4;  2RM2 4;  2R04 4;  1EV1 4;  4Q4Y 4;  1COV 4;  2HWB 4;  1RUE 4;  1VBD 4;  2HWC 4;  2X5I D;  1AL2 4;  1AR8 4;  1Z7S 4;  1VBC 4;  1PIV 4;  1BEV 4;  1PO2 4;  1RUG 4;  4Q4W 4;  1RUH 4;  1K5M D; 
#chains in the Genus database with same CATH topology
 2B76 A;  3AE1 A;  3AEF A;  1AR9 4;  2PW9 A;  3JBG 4;  1YQ3 A;  3AE9 A;  3SFE A;  1R08 4;  1H8T D;  4RHV 4;  3VR9 A;  3SFD A;  3AEG A;  1VBB 4;  1RUD 4;  1ASJ 4;  3JD7 4;  2RMU 4;  2EX3 A;  2R06 4;  3P4S A;  1KF6 A;  3FI7 A;  2FBW A;  3AED A;  3VRA A;  2R04 4;  2PY5 A;  2HWB 4;  2HWC 4;  2X5I D;  1AL2 4;  1Z7S 4;  1PIV 4;  1PO2 4;  3P4P A;  1RUG 4;  3AE5 A;  1VBA 4;  1EAH 4;  1RMU 4;  4YTM A;  1RVF 4;  1R09 4;  3AE6 A;  1PVC 4;  1RUI 4;  1D4M 4;  2RS3 4;  2R07 4;  2RM2 4;  3SUC A;  3AE8 A;  1VBC 4;  1BEV 4;  1K5M D;  5C2T A;  1ZP0 A;  4YTN A;  3VR8 A;  3AE7 A;  1XHZ A;  1NEK A;  2WDQ A;  1HRI 4;  1HRV 4;  1AR7 4;  2RS1 4;  5C3J A;  4YTP A;  2PZS A;  3AE4 A;  1AR6 4;  3VRB A;  2WDR A;  1OOP D;  1POV 0;  1NA1 D;  2H89 A;  2WDV A;  1RUF 4;  1RUC 4;  2WU5 A;  4YT0 A;  1RUE 4;  3AE3 A;  3P4Q A;  4YSZ A;  2WU2 A;  3AEB A;  3P4R A;  4Q4W 4;  1RHI 4;  1HXS 4;  2RS5 4;  3J8F 4;  4GB3 4;  1XI1 A;  3ABV A;  4Q4X 4;  2PLV 4;  3AEA A;  2PYL A;  1YQ4 A;  2H88 A;  2WP9 A;  4YXD A;  1NCQ D;  4Q4V 4;  1MQT D;  1VBE 4;  4PDW D;  3AE2 A;  3GQH A;  1PO1 4;  2WQY A;  3AEE A;  2ACZ A;  3GQK A;  1XHX A;  1RUJ 4;  4KX6 A;  2RR1 4;  1KFY A;  3CIR A;  4YSX A;  2PYJ A;  1EV1 4;  2WS3 A;  1ZOY A;  4Q4Y 4;  1COV 4;  1VBD 4;  3AEC A;  4YSY A;  1AR8 4;  1NEN A;  2R7F A;  1L0V A;  1RUH 4;  1VRH 4; 
#chains in the Genus database with same CATH homology
 1HXS 4;  2RS5 4;  4GB3 4;  1VBA 4;  3J8F 4;  1AR9 4;  3JBG 4;  2PLV 4;  4Q4X 4;  1EAH 4;  1RHI 4;  1RMU 4;  1R08 4;  1H8T D;  4RHV 4;  1RVF 4;  1HRI 4;  1NCQ D;  1R09 4;  1VRH 4;  1AR7 4;  2RS1 4;  1MQT D;  4Q4V 4;  1HRV 4;  1VBE 4;  4PDW D;  1VBB 4;  1AR6 4;  1PO1 4;  1RUD 4;  1PVC 4;  1ASJ 4;  1OOP D;  1POV 0;  1NA1 D;  3JD7 4;  1RUJ 4;  1RUF 4;  2RMU 4;  2RR1 4;  1RUC 4;  2R06 4;  1RUI 4;  1D4M 4;  2RS3 4;  2R07 4;  2RM2 4;  2R04 4;  1EV1 4;  4Q4Y 4;  1COV 4;  2HWB 4;  1RUE 4;  1VBD 4;  2HWC 4;  2X5I D;  1AL2 4;  1AR8 4;  1Z7S 4;  1VBC 4;  1PIV 4;  1BEV 4;  1PO2 4;  1RUG 4;  4Q4W 4;  1RUH 4;  1K5M D; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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