1AR74

P1/mahoney poliovirus, double mutant p1095s + h2142y
Total Genus 3

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
3
sequence length
68
structure length
60
Chain Sequence
GAQVSSQKVGAHESTINYTTINYYRDSASNAASKQDFSQDPSKFTEPIKDVLIKTAPMLN

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S2 (26-29)EMPTYAH1 (50-55)S1 (4-7)Updating...
connected with : NaN
molecule tags Virus
source organism Human poliovirus 1
publication title Structural studies of poliovirus mutants that overcome receptor defects.
pubmed doi rcsb
molecule keywords P1/MAHONEY POLIOVIRUS
total genus 3
structure length 60
sequence length 68
ec nomenclature ec 2.7.7.48: RNA-directed RNA polymerase.
pdb deposition date 1997-08-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
4 PF02226 Pico_P1A Picornavirus coat protein (VP4)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.80.10 Few Secondary Structures Irregular Rhinovirus 14, subunit 4 Picornavirus coat protein VP4 1ar7400
1RUG4 2RMU4 4PDWD 1K5MD 1RUF4 1VBE4 1RUI4 1RHI4 2R064 1H8TD 4RHV4 1RUE4 1HRI4 1OOPD 1RUH4 2R074 2X5ID 1ASJ4 2RR14 1NCQD 4Q4Y4 1RUD4 1AR94 1RMU4 1EV14 1PVC4 1EAH4 2PLV4 1R084 1VBB4 1RVF4 2RS54 1COV4 1Z7S4 1VBA4 1HRV4 4Q4X4 1AR84 3JD74 1AL24 1PO14 2HWB4 1PO24 2RS34 1POV0 2RM24 4GB34 1VBD4 1VRH4 1R094 4Q4W4 2R044 1AR74 1BEV4 1PIV4 2RS14 3JBG4 1RUC4 1D4M4 1HXS4 4Q4V4 1RUJ4 3J8F4 1MQTD 1VBC4 1AR64 1NA1D 2HWC4
chains in the Genus database with same CATH superfamily
3VRBA 2PY5A 1VBE4 1RHI4 1RUH4 2R074 1L0VA 1NCQD 1XHXA 2WU2A 2WP9A 3AE9A 4YXDA 2ACZA 3AEGA 3AE5A 1VBA4 1KFYA 1NENA 2R7FA 2RS34 1YQ3A 4Q4W4 2R044 1AR74 1BEV4 1PIV4 1ZOYA 2PW9A 4Q4V4 1RUJ4 2H89A 1MQTD 4YSXA 1AR64 1RUC4 3P4SA 2HWC4 3AE3A 1KF6A 3VR9A 1K5MD 1RUF4 2WDRA 2R064 1RUI4 1RUE4 1HRI4 5C3JA 1ASJ4 2PYLA 2WU5A 3AEBA 1VBB4 2RS54 4Q4X4 1Z7S4 3AEEA 3P4QA 1AL24 1PO14 3VRAA 4YSYA 2WDVA 2WQYA 3GQKA 4YTNA 1D4M4 1HXS4 2PYJA 2B76A 1RUG4 4PDWD 3AEAA 4RHV4 1H8TD 3VR8A 1ZP0A 1OOPD 2X5ID 4YTPA 3ABVA 1EV14 3FI7A 1PVC4 1EAH4 3P4RA 2PLV4 1R084 3AECA 5C2TA 1YQ4A 4KX6A 1AR84 1POV0 2RM24 4GB34 3AE1A 1XHZA 3AE6A 4YSZA 3CIRA 3J8F4 3AEDA 1VBC4 2PZSA 2WDQA 3AE2A 2RMU4 1NEKA 2EX3A 2RR14 3P4PA 2H88A 4Q4Y4 1RUD4 1AR94 1RMU4 1XI1A 2FBWA 1RVF4 1COV4 1HRV4 3AE7A 3JD74 2HWB4 1PO24 4YTMA 1VBD4 1VRH4 3AE8A 1R094 3SFEA 3GQHA 4YT0A 2WS3A 2RS14 3AE4A 3JBG4 3AEFA 1NA1D 3SFDA 3SUCA
chains in the Genus database with same CATH topology
1RUG4 2RMU4 4PDWD 1K5MD 1RUF4 1VBE4 1RUI4 1RHI4 2R064 1H8TD 4RHV4 1RUE4 1HRI4 1OOPD 1RUH4 2R074 2X5ID 1ASJ4 2RR14 1NCQD 4Q4Y4 1RUD4 1AR94 1RMU4 1EV14 1PVC4 1EAH4 2PLV4 1R084 1VBB4 1RVF4 2RS54 1COV4 1Z7S4 1VBA4 1HRV4 4Q4X4 1AR84 3JD74 1AL24 1PO14 2HWB4 1PO24 2RS34 1POV0 2RM24 4GB34 1VBD4 1VRH4 1R094 4Q4W4 2R044 1AR74 1BEV4 1PIV4 2RS14 3JBG4 1RUC4 1D4M4 1HXS4 4Q4V4 1RUJ4 3J8F4 1MQTD 1VBC4 1AR64 1NA1D 2HWC4
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1RUG 4;  2RMU 4;  4PDW D;  1K5M D;  1RUF 4;  1VBE 4;  1RUI 4;  1RHI 4;  2R06 4;  1H8T D;  4RHV 4;  1RUE 4;  1HRI 4;  1OOP D;  1RUH 4;  2R07 4;  2X5I D;  1ASJ 4;  2RR1 4;  1NCQ D;  4Q4Y 4;  1RUD 4;  1AR9 4;  1RMU 4;  1EV1 4;  1PVC 4;  1EAH 4;  2PLV 4;  1R08 4;  1VBB 4;  1RVF 4;  2RS5 4;  1COV 4;  1Z7S 4;  1VBA 4;  1HRV 4;  4Q4X 4;  1AR8 4;  3JD7 4;  1AL2 4;  1PO1 4;  2HWB 4;  1PO2 4;  2RS3 4;  1POV 0;  2RM2 4;  4GB3 4;  1VBD 4;  1VRH 4;  1R09 4;  4Q4W 4;  2R04 4;  1AR7 4;  1BEV 4;  1PIV 4;  2RS1 4;  3JBG 4;  1RUC 4;  1D4M 4;  1HXS 4;  4Q4V 4;  1RUJ 4;  3J8F 4;  1MQT D;  1VBC 4;  1AR6 4;  1NA1 D;  2HWC 4; 
#chains in the Genus database with same CATH topology
 3VRB A;  2PY5 A;  1VBE 4;  1RHI 4;  1RUH 4;  2R07 4;  1L0V A;  1NCQ D;  1XHX A;  2WU2 A;  2WP9 A;  3AE9 A;  4YXD A;  2ACZ A;  3AEG A;  3AE5 A;  1VBA 4;  1KFY A;  1NEN A;  2R7F A;  2RS3 4;  1YQ3 A;  4Q4W 4;  2R04 4;  1AR7 4;  1BEV 4;  1PIV 4;  1ZOY A;  2PW9 A;  4Q4V 4;  1RUJ 4;  2H89 A;  1MQT D;  4YSX A;  1AR6 4;  1RUC 4;  3P4S A;  2HWC 4;  3AE3 A;  1KF6 A;  3VR9 A;  1K5M D;  1RUF 4;  2WDR A;  2R06 4;  1RUI 4;  1RUE 4;  1HRI 4;  5C3J A;  1ASJ 4;  2PYL A;  2WU5 A;  3AEB A;  1VBB 4;  2RS5 4;  4Q4X 4;  1Z7S 4;  3AEE A;  3P4Q A;  1AL2 4;  1PO1 4;  3VRA A;  4YSY A;  2WDV A;  2WQY A;  3GQK A;  4YTN A;  1D4M 4;  1HXS 4;  2PYJ A;  2B76 A;  1RUG 4;  4PDW D;  3AEA A;  4RHV 4;  1H8T D;  3VR8 A;  1ZP0 A;  1OOP D;  2X5I D;  4YTP A;  3ABV A;  1EV1 4;  3FI7 A;  1PVC 4;  1EAH 4;  3P4R A;  2PLV 4;  1R08 4;  3AEC A;  5C2T A;  1YQ4 A;  4KX6 A;  1AR8 4;  1POV 0;  2RM2 4;  4GB3 4;  3AE1 A;  1XHZ A;  3AE6 A;  4YSZ A;  3CIR A;  3J8F 4;  3AED A;  1VBC 4;  2PZS A;  2WDQ A;  3AE2 A;  2RMU 4;  1NEK A;  2EX3 A;  2RR1 4;  3P4P A;  2H88 A;  4Q4Y 4;  1RUD 4;  1AR9 4;  1RMU 4;  1XI1 A;  2FBW A;  1RVF 4;  1COV 4;  1HRV 4;  3AE7 A;  3JD7 4;  2HWB 4;  1PO2 4;  4YTM A;  1VBD 4;  1VRH 4;  3AE8 A;  1R09 4;  3SFE A;  3GQH A;  4YT0 A;  2WS3 A;  2RS1 4;  3AE4 A;  3JBG 4;  3AEF A;  1NA1 D;  3SFD A;  3SUC A; 
#chains in the Genus database with same CATH homology
 1RUG 4;  2RMU 4;  4PDW D;  1K5M D;  1RUF 4;  1VBE 4;  1RUI 4;  1RHI 4;  2R06 4;  1H8T D;  4RHV 4;  1RUE 4;  1HRI 4;  1OOP D;  1RUH 4;  2R07 4;  2X5I D;  1ASJ 4;  2RR1 4;  1NCQ D;  4Q4Y 4;  1RUD 4;  1AR9 4;  1RMU 4;  1EV1 4;  1PVC 4;  1EAH 4;  2PLV 4;  1R08 4;  1VBB 4;  1RVF 4;  2RS5 4;  1COV 4;  1Z7S 4;  1VBA 4;  1HRV 4;  4Q4X 4;  1AR8 4;  3JD7 4;  1AL2 4;  1PO1 4;  2HWB 4;  1PO2 4;  2RS3 4;  1POV 0;  2RM2 4;  4GB3 4;  1VBD 4;  1VRH 4;  1R09 4;  4Q4W 4;  2R04 4;  1AR7 4;  1BEV 4;  1PIV 4;  2RS1 4;  3JBG 4;  1RUC 4;  1D4M 4;  1HXS 4;  4Q4V 4;  1RUJ 4;  3J8F 4;  1MQT D;  1VBC 4;  1AR6 4;  1NA1 D;  2HWC 4; 
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