1AR84

P1/mahoney poliovirus, mutant p1095s
Total Genus 5
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
5
sequence length
68
structure length
60
Chain Sequence
GAQVSSQKVGAHESTINYTTINYYRDSASNAASKQDFSQDPSKFTEPIKDVLIKTAPMLN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Structural studies of poliovirus mutants that overcome receptor defects.
pubmed doi rcsb
molecule tags Virus
source organism Human poliovirus 1
molecule keywords P1/MAHONEY POLIOVIRUS
total genus 5
structure length 60
sequence length 68
ec nomenclature ec 2.7.7.48: RNA-directed RNA polymerase.
pdb deposition date 1997-08-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
4 PF02226 Pico_P1A Picornavirus coat protein (VP4)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.80.10 Few Secondary Structures Irregular Rhinovirus 14, subunit 4 Picornavirus coat protein VP4 1ar8400
2HWB4 4Q4X4 1PO24 4Q4V4 1AR64 1BEV4 3JBG4 4RHV4 1HRV4 1H8TD 1NCQD 1POV0 1RUF4 1VBE4 3J8F4 1RUI4 4GB34 1OOPD 3JD74 1VBD4 1VBA4 1PO14 1PIV4 1COV4 1AL24 1VBB4 1Z7S4 1ASJ4 1NA1D 1AR94 1RUE4 1EV14 1R094 2RS54 4Q4W4 1HXS4 1MQTD 1AR74 1RUC4 1D4M4 2R074 1RHI4 4PDWD 4Q4Y4 2RR14 1RUD4 2HWC4 2RS34 1RUJ4 2R064 1AR84 1RVF4 1K5MD 1RMU4 2X5ID 2R044 1HRI4 1RUH4 1VBC4 1VRH4 2PLV4 2RM24 2RMU4 2RS14 1R084 1PVC4 1RUG4 1EAH4
chains in the Genus database with same CATH superfamily
2HWB4 3AEFA 4Q4X4 1PO24 3AE5A 2FBWA 3AE6A 3JBG4 4RHV4 1VBE4 3AEGA 4GB34 4YSZA 3GQHA 3JD74 1COV4 3P4RA 4YSXA 3P4SA 1ZOYA 1Z7S4 1NA1D 1EV14 1HXS4 1XHZA 1RUC4 2R074 1YQ4A 3AECA 3ABVA 1XI1A 2PYJA 2X5ID 5C2TA 2RMU4 1NENA 1L0VA 1EAH4 2H88A 2WDRA 3GQKA 2WP9A 4Q4V4 1BEV4 2PW9A 1H8TD 1NCQD 1POV0 1HRV4 3P4QA 3AEEA 3CIRA 1VBA4 1PO14 1XHXA 2RS54 4YTPA 1R094 2B76A 1MQTD 4PDWD 2RR14 3AE1A 2PYLA 3AEBA 1AR84 3VR9A 1VBC4 1VRH4 3VRBA 1KF6A 2WU2A 1RUG4 2R7FA 1AR64 4YT0A 1RUF4 1RUI4 4YTMA 3AE2A 4YSYA 4YXDA 2PY5A 2EX3A 1AL24 1VBB4 2WDVA 3AE8A 4Q4W4 3AE9A 3AE3A 3AE4A 3VR8A 1AR74 1D4M4 1RHI4 3AEAA 4Q4Y4 3SUCA 1RUD4 2HWC4 2RS34 1RUJ4 2WDQA 2R064 1RVF4 2ACZA 1RMU4 1HRI4 1RUH4 2RM24 2PZSA 3P4PA 3AE7A 1R084 2WQYA 3FI7A 4KX6A 3J8F4 2WU5A 1OOPD 1VBD4 1ZP0A 1PIV4 5C3JA 1ASJ4 4YTNA 1KFYA 1AR94 1RUE4 1NEKA 1YQ3A 2WS3A 3VRAA 3SFDA 2H89A 3SFEA 1K5MD 2R044 3AEDA 2PLV4 2RS14 1PVC4
chains in the Genus database with same CATH topology
2HWB4 4Q4X4 1PO24 4Q4V4 1AR64 1BEV4 3JBG4 4RHV4 1HRV4 1H8TD 1NCQD 1POV0 1RUF4 1VBE4 3J8F4 1RUI4 4GB34 1OOPD 3JD74 1VBD4 1VBA4 1PO14 1PIV4 1COV4 1AL24 1VBB4 1Z7S4 1ASJ4 1NA1D 1AR94 1RUE4 1EV14 1R094 2RS54 4Q4W4 1HXS4 1MQTD 1AR74 1RUC4 1D4M4 2R074 1RHI4 4PDWD 4Q4Y4 2RR14 1RUD4 2HWC4 2RS34 1RUJ4 2R064 1AR84 1RVF4 1K5MD 1RMU4 2X5ID 2R044 1HRI4 1RUH4 1VBC4 1VRH4 2PLV4 2RM24 2RMU4 2RS14 1R084 1PVC4 1RUG4 1EAH4
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2HWB 4;  4Q4X 4;  1PO2 4;  4Q4V 4;  1AR6 4;  1BEV 4;  3JBG 4;  4RHV 4;  1HRV 4;  1H8T D;  1NCQ D;  1POV 0;  1RUF 4;  1VBE 4;  3J8F 4;  1RUI 4;  4GB3 4;  1OOP D;  3JD7 4;  1VBD 4;  1VBA 4;  1PO1 4;  1PIV 4;  1COV 4;  1AL2 4;  1VBB 4;  1Z7S 4;  1ASJ 4;  1NA1 D;  1AR9 4;  1RUE 4;  1EV1 4;  1R09 4;  2RS5 4;  4Q4W 4;  1HXS 4;  1MQT D;  1AR7 4;  1RUC 4;  1D4M 4;  2R07 4;  1RHI 4;  4PDW D;  4Q4Y 4;  2RR1 4;  1RUD 4;  2HWC 4;  2RS3 4;  1RUJ 4;  2R06 4;  1AR8 4;  1RVF 4;  1K5M D;  1RMU 4;  2X5I D;  2R04 4;  1HRI 4;  1RUH 4;  1VBC 4;  1VRH 4;  2PLV 4;  2RM2 4;  2RMU 4;  2RS1 4;  1R08 4;  1PVC 4;  1RUG 4;  1EAH 4; 
#chains in the Genus database with same CATH topology
 2HWB 4;  3AEF A;  4Q4X 4;  1PO2 4;  3AE5 A;  2FBW A;  3AE6 A;  3JBG 4;  4RHV 4;  1VBE 4;  3AEG A;  4GB3 4;  4YSZ A;  3GQH A;  3JD7 4;  1COV 4;  3P4R A;  4YSX A;  3P4S A;  1ZOY A;  1Z7S 4;  1NA1 D;  1EV1 4;  1HXS 4;  1XHZ A;  1RUC 4;  2R07 4;  1YQ4 A;  3AEC A;  3ABV A;  1XI1 A;  2PYJ A;  2X5I D;  5C2T A;  2RMU 4;  1NEN A;  1L0V A;  1EAH 4;  2H88 A;  2WDR A;  3GQK A;  2WP9 A;  4Q4V 4;  1BEV 4;  2PW9 A;  1H8T D;  1NCQ D;  1POV 0;  1HRV 4;  3P4Q A;  3AEE A;  3CIR A;  1VBA 4;  1PO1 4;  1XHX A;  2RS5 4;  4YTP A;  1R09 4;  2B76 A;  1MQT D;  4PDW D;  2RR1 4;  3AE1 A;  2PYL A;  3AEB A;  1AR8 4;  3VR9 A;  1VBC 4;  1VRH 4;  3VRB A;  1KF6 A;  2WU2 A;  1RUG 4;  2R7F A;  1AR6 4;  4YT0 A;  1RUF 4;  1RUI 4;  4YTM A;  3AE2 A;  4YSY A;  4YXD A;  2PY5 A;  2EX3 A;  1AL2 4;  1VBB 4;  2WDV A;  3AE8 A;  4Q4W 4;  3AE9 A;  3AE3 A;  3AE4 A;  3VR8 A;  1AR7 4;  1D4M 4;  1RHI 4;  3AEA A;  4Q4Y 4;  3SUC A;  1RUD 4;  2HWC 4;  2RS3 4;  1RUJ 4;  2WDQ A;  2R06 4;  1RVF 4;  2ACZ A;  1RMU 4;  1HRI 4;  1RUH 4;  2RM2 4;  2PZS A;  3P4P A;  3AE7 A;  1R08 4;  2WQY A;  3FI7 A;  4KX6 A;  3J8F 4;  2WU5 A;  1OOP D;  1VBD 4;  1ZP0 A;  1PIV 4;  5C3J A;  1ASJ 4;  4YTN A;  1KFY A;  1AR9 4;  1RUE 4;  1NEK A;  1YQ3 A;  2WS3 A;  3VRA A;  3SFD A;  2H89 A;  3SFE A;  1K5M D;  2R04 4;  3AED A;  2PLV 4;  2RS1 4;  1PVC 4; 
#chains in the Genus database with same CATH homology
 2HWB 4;  4Q4X 4;  1PO2 4;  4Q4V 4;  1AR6 4;  1BEV 4;  3JBG 4;  4RHV 4;  1HRV 4;  1H8T D;  1NCQ D;  1POV 0;  1RUF 4;  1VBE 4;  3J8F 4;  1RUI 4;  4GB3 4;  1OOP D;  3JD7 4;  1VBD 4;  1VBA 4;  1PO1 4;  1PIV 4;  1COV 4;  1AL2 4;  1VBB 4;  1Z7S 4;  1ASJ 4;  1NA1 D;  1AR9 4;  1RUE 4;  1EV1 4;  1R09 4;  2RS5 4;  4Q4W 4;  1HXS 4;  1MQT D;  1AR7 4;  1RUC 4;  1D4M 4;  2R07 4;  1RHI 4;  4PDW D;  4Q4Y 4;  2RR1 4;  1RUD 4;  2HWC 4;  2RS3 4;  1RUJ 4;  2R06 4;  1AR8 4;  1RVF 4;  1K5M D;  1RMU 4;  2X5I D;  2R04 4;  1HRI 4;  1RUH 4;  1VBC 4;  1VRH 4;  2PLV 4;  2RM2 4;  2RMU 4;  2RS1 4;  1R08 4;  1PVC 4;  1RUG 4;  1EAH 4; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...