1AR84

P1/mahoney poliovirus, mutant p1095s
Total Genus 5

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
5
sequence length
68
structure length
60
Chain Sequence
GAQVSSQKVGAHESTINYTTINYYRDSASNAASKQDFSQDPSKFTEPIKDVLIKTAPMLN

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
S2 (26-29)EMPTY3H1 (36-38)AH1 (50-55)S1 (4-7)O1 (43-45)Updating...
connected with : NaN
molecule tags Virus
source organism Human poliovirus 1
publication title Structural studies of poliovirus mutants that overcome receptor defects.
pubmed doi rcsb
molecule keywords P1/MAHONEY POLIOVIRUS
total genus 5
structure length 60
sequence length 68
ec nomenclature ec 2.7.7.48: RNA-directed RNA polymerase.
pdb deposition date 1997-08-11

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
4 PF02226 Pico_P1A Picornavirus coat protein (VP4)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.80.10 Few Secondary Structures Irregular Rhinovirus 14, subunit 4 Picornavirus coat protein VP4 1ar8400
1Z7S4 1VBC4 1RHI4 2R074 1AR74 1RVF4 1RUF4 1D4M4 1HXS4 1OOPD 1RUE4 1HRI4 4Q4X4 1RUH4 2X5ID 2R044 1VRH4 2R064 1VBA4 1EAH4 1RUI4 2RS54 1AL24 1AR64 4Q4V4 1RUD4 1VBB4 1RUG4 3JBG4 1R084 1NA1D 4Q4W4 2RM24 1RMU4 4Q4Y4 1PVC4 1RUC4 1VBD4 1HRV4 1COV4 1K5MD 1NCQD 1RUJ4 4PDWD 1PO24 2RMU4 1BEV4 2RS14 1AR94 3J8F4 4RHV4 1H8TD 1VBE4 1EV14 1POV0 2HWB4 1AR84 2HWC4 4GB34 1ASJ4 1R094 2RR14 2RS34 3JD74 1PO14 1PIV4 2PLV4 1MQTD
chains in the Genus database with same CATH superfamily
1RUE4 2R044 1VBA4 2WQYA 1RUI4 1KFYA 3P4QA 3AEGA 3P4SA 1NA1D 5C2TA 1NCQD 2RMU4 3J8F4 3P4PA 2PYLA 3AE8A 2HWB4 4GB34 3AEBA 2WP9A 1RMU4 2EX3A 3FI7A 2PYJA 1RHI4 2R074 3VR8A 1RVF4 1XHZA 1RUF4 1D4M4 1HXS4 3AEEA 4YSZA 1RUH4 3AE4A 1VRH4 1EAH4 1AR64 1RUD4 3AE2A 1XI1A 2B76A 3JBG4 3GQHA 2RM24 3SFDA 1PVC4 2WDVA 3GQKA 3SFEA 1ZP0A 1VBD4 2ACZA 1KF6A 4YSYA 3ABVA 1H8TD 1VBE4 1ASJ4 1R094 3JD74 3AEAA 2R7FA 1MQTD 4YTNA 3SUCA 4YT0A 3VR9A 1OOPD 1HRI4 2R064 2WU2A 2PY5A 1AL24 1VBB4 4KX6A 1R084 3AE6A 4YTPA 1NENA 2FBWA 1HRV4 3P4RA 1COV4 1L0VA 2WU5A 4YSXA 1NEKA 1PO24 1YQ4A 1BEV4 2H89A 1AR94 2RS14 4RHV4 1AR84 1PIV4 3VRBA 3VRAA 2WS3A 1XHXA 1Z7S4 1VBC4 4YXDA 1AR74 3AE5A 4Q4X4 3AEFA 2WDQA 2X5ID 2PW9A 1ZOYA 3CIRA 2RS54 4Q4V4 5C3JA 1RUG4 2H88A 3AECA 4Q4Y4 3AEDA 1RUC4 1K5MD 2PZSA 1RUJ4 4PDWD 1YQ3A 2WDRA 3AE7A 1EV14 3AE1A 1POV0 3AE3A 4YTMA 2HWC4 2RR14 2RS34 1PO14 3AE9A 2PLV4 4Q4W4
chains in the Genus database with same CATH topology
1Z7S4 1VBC4 1RHI4 2R074 1AR74 1RVF4 1RUF4 1D4M4 1HXS4 1OOPD 1RUE4 1HRI4 4Q4X4 1RUH4 2X5ID 2R044 1VRH4 2R064 1VBA4 1EAH4 1RUI4 2RS54 1AL24 1AR64 4Q4V4 1RUD4 1VBB4 1RUG4 3JBG4 1R084 1NA1D 4Q4W4 2RM24 1RMU4 4Q4Y4 1PVC4 1RUC4 1VBD4 1HRV4 1COV4 1K5MD 1NCQD 1RUJ4 4PDWD 1PO24 2RMU4 1BEV4 2RS14 1AR94 3J8F4 4RHV4 1H8TD 1VBE4 1EV14 1POV0 2HWB4 1AR84 2HWC4 4GB34 1ASJ4 1R094 2RR14 2RS34 3JD74 1PO14 1PIV4 2PLV4 1MQTD
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1Z7S 4;  1VBC 4;  1RHI 4;  2R07 4;  1AR7 4;  1RVF 4;  1RUF 4;  1D4M 4;  1HXS 4;  1OOP D;  1RUE 4;  1HRI 4;  4Q4X 4;  1RUH 4;  2X5I D;  2R04 4;  1VRH 4;  2R06 4;  1VBA 4;  1EAH 4;  1RUI 4;  2RS5 4;  1AL2 4;  1AR6 4;  4Q4V 4;  1RUD 4;  1VBB 4;  1RUG 4;  3JBG 4;  1R08 4;  1NA1 D;  4Q4W 4;  2RM2 4;  1RMU 4;  4Q4Y 4;  1PVC 4;  1RUC 4;  1VBD 4;  1HRV 4;  1COV 4;  1K5M D;  1NCQ D;  1RUJ 4;  4PDW D;  1PO2 4;  2RMU 4;  1BEV 4;  2RS1 4;  1AR9 4;  3J8F 4;  4RHV 4;  1H8T D;  1VBE 4;  1EV1 4;  1POV 0;  2HWB 4;  1AR8 4;  2HWC 4;  4GB3 4;  1ASJ 4;  1R09 4;  2RR1 4;  2RS3 4;  3JD7 4;  1PO1 4;  1PIV 4;  2PLV 4;  1MQT D; 
#chains in the Genus database with same CATH topology
 1RUE 4;  2R04 4;  1VBA 4;  2WQY A;  1RUI 4;  1KFY A;  3P4Q A;  3AEG A;  3P4S A;  1NA1 D;  5C2T A;  1NCQ D;  2RMU 4;  3J8F 4;  3P4P A;  2PYL A;  3AE8 A;  2HWB 4;  4GB3 4;  3AEB A;  2WP9 A;  1RMU 4;  2EX3 A;  3FI7 A;  2PYJ A;  1RHI 4;  2R07 4;  3VR8 A;  1RVF 4;  1XHZ A;  1RUF 4;  1D4M 4;  1HXS 4;  3AEE A;  4YSZ A;  1RUH 4;  3AE4 A;  1VRH 4;  1EAH 4;  1AR6 4;  1RUD 4;  3AE2 A;  1XI1 A;  2B76 A;  3JBG 4;  3GQH A;  2RM2 4;  3SFD A;  1PVC 4;  2WDV A;  3GQK A;  3SFE A;  1ZP0 A;  1VBD 4;  2ACZ A;  1KF6 A;  4YSY A;  3ABV A;  1H8T D;  1VBE 4;  1ASJ 4;  1R09 4;  3JD7 4;  3AEA A;  2R7F A;  1MQT D;  4YTN A;  3SUC A;  4YT0 A;  3VR9 A;  1OOP D;  1HRI 4;  2R06 4;  2WU2 A;  2PY5 A;  1AL2 4;  1VBB 4;  4KX6 A;  1R08 4;  3AE6 A;  4YTP A;  1NEN A;  2FBW A;  1HRV 4;  3P4R A;  1COV 4;  1L0V A;  2WU5 A;  4YSX A;  1NEK A;  1PO2 4;  1YQ4 A;  1BEV 4;  2H89 A;  1AR9 4;  2RS1 4;  4RHV 4;  1AR8 4;  1PIV 4;  3VRB A;  3VRA A;  2WS3 A;  1XHX A;  1Z7S 4;  1VBC 4;  4YXD A;  1AR7 4;  3AE5 A;  4Q4X 4;  3AEF A;  2WDQ A;  2X5I D;  2PW9 A;  1ZOY A;  3CIR A;  2RS5 4;  4Q4V 4;  5C3J A;  1RUG 4;  2H88 A;  3AEC A;  4Q4Y 4;  3AED A;  1RUC 4;  1K5M D;  2PZS A;  1RUJ 4;  4PDW D;  1YQ3 A;  2WDR A;  3AE7 A;  1EV1 4;  3AE1 A;  1POV 0;  3AE3 A;  4YTM A;  2HWC 4;  2RR1 4;  2RS3 4;  1PO1 4;  3AE9 A;  2PLV 4;  4Q4W 4; 
#chains in the Genus database with same CATH homology
 1Z7S 4;  1VBC 4;  1RHI 4;  2R07 4;  1AR7 4;  1RVF 4;  1RUF 4;  1D4M 4;  1HXS 4;  1OOP D;  1RUE 4;  1HRI 4;  4Q4X 4;  1RUH 4;  2X5I D;  2R04 4;  1VRH 4;  2R06 4;  1VBA 4;  1EAH 4;  1RUI 4;  2RS5 4;  1AL2 4;  1AR6 4;  4Q4V 4;  1RUD 4;  1VBB 4;  1RUG 4;  3JBG 4;  1R08 4;  1NA1 D;  4Q4W 4;  2RM2 4;  1RMU 4;  4Q4Y 4;  1PVC 4;  1RUC 4;  1VBD 4;  1HRV 4;  1COV 4;  1K5M D;  1NCQ D;  1RUJ 4;  4PDW D;  1PO2 4;  2RMU 4;  1BEV 4;  2RS1 4;  1AR9 4;  3J8F 4;  4RHV 4;  1H8T D;  1VBE 4;  1EV1 4;  1POV 0;  2HWB 4;  1AR8 4;  2HWC 4;  4GB3 4;  1ASJ 4;  1R09 4;  2RR1 4;  2RS3 4;  3JD7 4;  1PO1 4;  1PIV 4;  2PLV 4;  1MQT D; 
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