1AR9 | Genus

Total Genus 3

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	3
sequence length	68
structure length	60
Chain Sequence	GAQVSSQKVGAHESTINYTTINYYRDSASNAASKQDFSQDPSKFTEPIKDVLIKTAPMLN

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Virus
source organism	Human poliovirus 1
publication title	Structural studies of poliovirus mutants that overcome receptor defects. pubmed doi rcsb
molecule keywords	P1/MAHONEY POLIOVIRUS
total genus	3
structure length	60
sequence length	68
ec nomenclature	ec 2.7.7.48: RNA-directed RNA polymerase.
pdb deposition date	1997-08-11

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
4	PF02226	Pico_P1A	Picornavirus coat protein (VP4)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
4.10.80.10	Few Secondary Structures	Irregular	Rhinovirus 14, subunit 4	Picornavirus coat protein VP4	1ar9400

1D4M4 2R074 2R064 2RM24 4RHV4 1VRH4 1PO24 1RUE4 2HWC4 1VBE4 1RUC4 1R084 1COV4 2RS54 1RMU4 2RR14 1VBA4 1AR64 2X5ID 2RS34 4Q4V4 1R094 2R044 2RS14 1RVF4 4Q4W4 4Q4Y4 3JBG4 1RHI4 1RUD4 3J8F4 2RMU4 1Z7S4 1EV14 1AL24 1HXS4 1PO14 1PIV4 1POV0 1RUH4 1OOPD 1EAH4 1RUG4 3JD74 2HWB4 2PLV4 1NCQD 1VBD4 1RUF4 1VBB4 1HRV4 1RUI4 1AR84 4GB34 1MQTD 1RUJ4 1HRI4 1K5MD 4PDWD 1NA1D 1BEV4 1AR94 1H8TD 1AR74 4Q4X4 1ASJ4 1PVC4 1VBC4
chains in the Genus database with same CATH superfamily

1D4M4 2R074 3ABVA 1YQ4A 3P4SA 1RUC4 1R084 1XHZA 1AR64 2H88A 4Q4W4 4Q4Y4 1PO14 5C3JA 2H89A 2PYJA 3JD74 1VBD4 3AE3A 3AE2A 2WDVA 1RUI4 3CIRA 3AEAA 3AE8A 1MQTD 4PDWD 1NA1D 1KFYA 2WS3A 2R7FA 1PVC4 3VRBA 4YT0A 2R064 1ZP0A 4YXDA 3GQKA 1VBE4 2B76A 2FBWA 5C2TA 3SFDA 2RR14 2X5ID 3AE7A 1R094 1RVF4 3JBG4 3VRAA 1L0VA 3AEDA 2RMU4 1Z7S4 1NENA 1EV14 1YQ3A 1PIV4 1RUH4 1OOPD 1EAH4 1RUG4 2HWB4 3AEEA 2WU5A 2EX3A 3FI7A 4YTMA 3VR9A 1RUJ4 1BEV4 1H8TD 2WP9A 1XHXA 1ASJ4 4RHV4 2RM24 2HWC4 1RUE4 2RS54 3AE5A 1RMU4 2PZSA 3GQHA 2RS34 2R044 3SFEA 1KF6A 3J8F4 4KX6A 1AL24 3AECA 3VR8A 1POV0 3AEGA 1NEKA 2PLV4 3AEBA 1NCQD 1RUF4 1HRV4 2WDRA 2WDQA 1XI1A 1K5MD 3SUCA 3AE1A 4YSYA 1VBC4 3AEFA 3AE9A 1VRH4 1PO24 1COV4 3AE4A 3P4QA 1VBA4 1ZOYA 2PW9A 3P4RA 3P4PA 4Q4V4 3AE6A 2RS14 1RHI4 1RUD4 2PY5A 2ACZA 1HXS4 2PYLA 1VBB4 2WU2A 2WQYA 4YTPA 1AR84 4YSXA 4GB34 1HRI4 4YTNA 1AR94 1AR74 4Q4X4 4YSZA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1D4M 4;  2R07 4;  2R06 4;  2RM2 4;  4RHV 4;  1VRH 4;  1PO2 4;  1RUE 4;  2HWC 4;  1VBE 4;  1RUC 4;  1R08 4;  1COV 4;  2RS5 4;  1RMU 4;  2RR1 4;  1VBA 4;  1AR6 4;  2X5I D;  2RS3 4;  4Q4V 4;  1R09 4;  2R04 4;  2RS1 4;  1RVF 4;  4Q4W 4;  4Q4Y 4;  3JBG 4;  1RHI 4;  1RUD 4;  3J8F 4;  2RMU 4;  1Z7S 4;  1EV1 4;  1AL2 4;  1HXS 4;  1PO1 4;  1PIV 4;  1POV 0;  1RUH 4;  1OOP D;  1EAH 4;  1RUG 4;  3JD7 4;  2HWB 4;  2PLV 4;  1NCQ D;  1VBD 4;  1RUF 4;  1VBB 4;  1HRV 4;  1RUI 4;  1AR8 4;  4GB3 4;  1MQT D;  1RUJ 4;  1HRI 4;  1K5M D;  4PDW D;  1NA1 D;  1BEV 4;  1AR9 4;  1H8T D;  1AR7 4;  4Q4X 4;  1ASJ 4;  1PVC 4;  1VBC 4; 
#chains in the Genus database with same CATH topology
 1D4M 4;  2R07 4;  3ABV A;  1YQ4 A;  3P4S A;  1RUC 4;  1R08 4;  1XHZ A;  1AR6 4;  2H88 A;  4Q4W 4;  4Q4Y 4;  1PO1 4;  5C3J A;  2H89 A;  2PYJ A;  3JD7 4;  1VBD 4;  3AE3 A;  3AE2 A;  2WDV A;  1RUI 4;  3CIR A;  3AEA A;  3AE8 A;  1MQT D;  4PDW D;  1NA1 D;  1KFY A;  2WS3 A;  2R7F A;  1PVC 4;  3VRB A;  4YT0 A;  2R06 4;  1ZP0 A;  4YXD A;  3GQK A;  1VBE 4;  2B76 A;  2FBW A;  5C2T A;  3SFD A;  2RR1 4;  2X5I D;  3AE7 A;  1R09 4;  1RVF 4;  3JBG 4;  3VRA A;  1L0V A;  3AED A;  2RMU 4;  1Z7S 4;  1NEN A;  1EV1 4;  1YQ3 A;  1PIV 4;  1RUH 4;  1OOP D;  1EAH 4;  1RUG 4;  2HWB 4;  3AEE A;  2WU5 A;  2EX3 A;  3FI7 A;  4YTM A;  3VR9 A;  1RUJ 4;  1BEV 4;  1H8T D;  2WP9 A;  1XHX A;  1ASJ 4;  4RHV 4;  2RM2 4;  2HWC 4;  1RUE 4;  2RS5 4;  3AE5 A;  1RMU 4;  2PZS A;  3GQH A;  2RS3 4;  2R04 4;  3SFE A;  1KF6 A;  3J8F 4;  4KX6 A;  1AL2 4;  3AEC A;  3VR8 A;  1POV 0;  3AEG A;  1NEK A;  2PLV 4;  3AEB A;  1NCQ D;  1RUF 4;  1HRV 4;  2WDR A;  2WDQ A;  1XI1 A;  1K5M D;  3SUC A;  3AE1 A;  4YSY A;  1VBC 4;  3AEF A;  3AE9 A;  1VRH 4;  1PO2 4;  1COV 4;  3AE4 A;  3P4Q A;  1VBA 4;  1ZOY A;  2PW9 A;  3P4R A;  3P4P A;  4Q4V 4;  3AE6 A;  2RS1 4;  1RHI 4;  1RUD 4;  2PY5 A;  2ACZ A;  1HXS 4;  2PYL A;  1VBB 4;  2WU2 A;  2WQY A;  4YTP A;  1AR8 4;  4YSX A;  4GB3 4;  1HRI 4;  4YTN A;  1AR9 4;  1AR7 4;  4Q4X 4;  4YSZ A; 
#chains in the Genus database with same CATH homology
 1D4M 4;  2R07 4;  2R06 4;  2RM2 4;  4RHV 4;  1VRH 4;  1PO2 4;  1RUE 4;  2HWC 4;  1VBE 4;  1RUC 4;  1R08 4;  1COV 4;  2RS5 4;  1RMU 4;  2RR1 4;  1VBA 4;  1AR6 4;  2X5I D;  2RS3 4;  4Q4V 4;  1R09 4;  2R04 4;  2RS1 4;  1RVF 4;  4Q4W 4;  4Q4Y 4;  3JBG 4;  1RHI 4;  1RUD 4;  3J8F 4;  2RMU 4;  1Z7S 4;  1EV1 4;  1AL2 4;  1HXS 4;  1PO1 4;  1PIV 4;  1POV 0;  1RUH 4;  1OOP D;  1EAH 4;  1RUG 4;  3JD7 4;  2HWB 4;  2PLV 4;  1NCQ D;  1VBD 4;  1RUF 4;  1VBB 4;  1HRV 4;  1RUI 4;  1AR8 4;  4GB3 4;  1MQT D;  1RUJ 4;  1HRI 4;  1K5M D;  4PDW D;  1NA1 D;  1BEV 4;  1AR9 4;  1H8T D;  1AR7 4;  4Q4X 4;  1ASJ 4;  1PVC 4;  1VBC 4;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1AR94

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations