1ASJ | Genus

Total Genus 3

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	3
sequence length	68
structure length	60
Chain Sequence	GAQVSSQKVGAHESTINYTTINYYRDSASNAASKQDFSQDPSKFTEPIKDVLIKTAPMLN

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Virus
publication title	Structural studies of poliovirus mutants that overcome receptor defects. pubmed doi rcsb
molecule keywords	P1/MAHONEY POLIOVIRUS
total genus	3
structure length	60
sequence length	68
ec nomenclature	ec 2.7.7.48: RNA-directed RNA polymerase.
pdb deposition date	1997-08-11

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
4	PF02226	Pico_P1A	Picornavirus coat protein (VP4)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
4.10.80.10	Few Secondary Structures	Irregular	Rhinovirus 14, subunit 4	Picornavirus coat protein VP4	1asj400

4Q4W4 2R044 2RR14 1D4M4 1ASJ4 1OOPD 2RMU4 1RVF4 2RS34 1AR64 1EV14 2HWC4 1RUI4 2RS14 1RUE4 1NCQD 1EAH4 2RS54 2HWB4 1VBD4 1POV0 1H8TD 1AL24 1AR84 1RUH4 1VBA4 4Q4V4 1PO14 1RUG4 1VBE4 2RM24 4Q4X4 1MQTD 1AR74 1RUJ4 2R064 1Z7S4 2X5ID 3J8F4 2PLV4 1RMU4 1RUF4 3JBG4 1AR94 1PO24 1R084 1R094 1VBC4 1RUD4 1RUC4 3JD74 1VRH4 2R074 4GB34 1RHI4 1HXS4 4Q4Y4 4RHV4 1PIV4 1COV4 1HRI4 1VBB4 1HRV4 1PVC4 4PDWD 1BEV4 1NA1D 1K5MD
chains in the Genus database with same CATH superfamily

4KX6A 4Q4W4 4YSYA 1EV14 1ZOYA 1XHXA 3VRAA 1RUI4 1NCQD 1AR84 1RUH4 2WDVA 1PO14 1VBE4 3J8F4 3ABVA 1KFYA 1L0VA 5C2TA 1R094 2PYJA 4YTNA 3JD74 1VRH4 4GB34 1RHI4 3SFDA 3FI7A 1COV4 3CIRA 1NA1D 4YTPA 3AE6A 1D4M4 2EX3A 2RS34 3VRBA 4YT0A 4YSZA 4YXDA 2ACZA 3AE5A 1VBD4 1AL24 1KF6A 1RUG4 1NENA 1MQTD 1AR74 1Z7S4 1NEKA 2PLV4 3AE1A 3VR8A 1AR94 1R084 4YSXA 1XI1A 1RUD4 5C3JA 2WS3A 3AE3A 2R074 3AE2A 2WU5A 3AEDA 3GQKA 3AE8A 1PVC4 4PDWD 1YQ4A 3AEBA 3SFEA 2R044 1XHZA 3VR9A 3P4SA 3AEFA 2HWC4 2RS14 2HWB4 3AE9A 1POV0 1VBA4 4Q4X4 2X5ID 2WP9A 1RUF4 3AE7A 3JBG4 1PO24 3AEEA 2B76A 2WQYA 4Q4Y4 1PIV4 2R7FA 2PYLA 3AE4A 1HRI4 1HRV4 2WDQA 2H89A 1K5MD 3P4PA 2RR14 3AEGA 1ASJ4 1OOPD 2RMU4 1RVF4 2PZSA 1AR64 1RUE4 1EAH4 2RS54 1H8TD 3AECA 4Q4V4 2PW9A 3AEAA 2RM24 1RUJ4 2FBWA 2R064 2PY5A 1RMU4 1ZP0A 1VBC4 3GQHA 1RUC4 3P4QA 3P4RA 2WU2A 4YTMA 1HXS4 4RHV4 2WDRA 1YQ3A 3SUCA 1VBB4 1BEV4 2H88A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4Q4W 4;  2R04 4;  2RR1 4;  1D4M 4;  1ASJ 4;  1OOP D;  2RMU 4;  1RVF 4;  2RS3 4;  1AR6 4;  1EV1 4;  2HWC 4;  1RUI 4;  2RS1 4;  1RUE 4;  1NCQ D;  1EAH 4;  2RS5 4;  2HWB 4;  1VBD 4;  1POV 0;  1H8T D;  1AL2 4;  1AR8 4;  1RUH 4;  1VBA 4;  4Q4V 4;  1PO1 4;  1RUG 4;  1VBE 4;  2RM2 4;  4Q4X 4;  1MQT D;  1AR7 4;  1RUJ 4;  2R06 4;  1Z7S 4;  2X5I D;  3J8F 4;  2PLV 4;  1RMU 4;  1RUF 4;  3JBG 4;  1AR9 4;  1PO2 4;  1R08 4;  1R09 4;  1VBC 4;  1RUD 4;  1RUC 4;  3JD7 4;  1VRH 4;  2R07 4;  4GB3 4;  1RHI 4;  1HXS 4;  4Q4Y 4;  4RHV 4;  1PIV 4;  1COV 4;  1HRI 4;  1VBB 4;  1HRV 4;  1PVC 4;  4PDW D;  1BEV 4;  1NA1 D;  1K5M D; 
#chains in the Genus database with same CATH topology
 4KX6 A;  4Q4W 4;  4YSY A;  1EV1 4;  1ZOY A;  1XHX A;  3VRA A;  1RUI 4;  1NCQ D;  1AR8 4;  1RUH 4;  2WDV A;  1PO1 4;  1VBE 4;  3J8F 4;  3ABV A;  1KFY A;  1L0V A;  5C2T A;  1R09 4;  2PYJ A;  4YTN A;  3JD7 4;  1VRH 4;  4GB3 4;  1RHI 4;  3SFD A;  3FI7 A;  1COV 4;  3CIR A;  1NA1 D;  4YTP A;  3AE6 A;  1D4M 4;  2EX3 A;  2RS3 4;  3VRB A;  4YT0 A;  4YSZ A;  4YXD A;  2ACZ A;  3AE5 A;  1VBD 4;  1AL2 4;  1KF6 A;  1RUG 4;  1NEN A;  1MQT D;  1AR7 4;  1Z7S 4;  1NEK A;  2PLV 4;  3AE1 A;  3VR8 A;  1AR9 4;  1R08 4;  4YSX A;  1XI1 A;  1RUD 4;  5C3J A;  2WS3 A;  3AE3 A;  2R07 4;  3AE2 A;  2WU5 A;  3AED A;  3GQK A;  3AE8 A;  1PVC 4;  4PDW D;  1YQ4 A;  3AEB A;  3SFE A;  2R04 4;  1XHZ A;  3VR9 A;  3P4S A;  3AEF A;  2HWC 4;  2RS1 4;  2HWB 4;  3AE9 A;  1POV 0;  1VBA 4;  4Q4X 4;  2X5I D;  2WP9 A;  1RUF 4;  3AE7 A;  3JBG 4;  1PO2 4;  3AEE A;  2B76 A;  2WQY A;  4Q4Y 4;  1PIV 4;  2R7F A;  2PYL A;  3AE4 A;  1HRI 4;  1HRV 4;  2WDQ A;  2H89 A;  1K5M D;  3P4P A;  2RR1 4;  3AEG A;  1ASJ 4;  1OOP D;  2RMU 4;  1RVF 4;  2PZS A;  1AR6 4;  1RUE 4;  1EAH 4;  2RS5 4;  1H8T D;  3AEC A;  4Q4V 4;  2PW9 A;  3AEA A;  2RM2 4;  1RUJ 4;  2FBW A;  2R06 4;  2PY5 A;  1RMU 4;  1ZP0 A;  1VBC 4;  3GQH A;  1RUC 4;  3P4Q A;  3P4R A;  2WU2 A;  4YTM A;  1HXS 4;  4RHV 4;  2WDR A;  1YQ3 A;  3SUC A;  1VBB 4;  1BEV 4;  2H88 A; 
#chains in the Genus database with same CATH homology
 4Q4W 4;  2R04 4;  2RR1 4;  1D4M 4;  1ASJ 4;  1OOP D;  2RMU 4;  1RVF 4;  2RS3 4;  1AR6 4;  1EV1 4;  2HWC 4;  1RUI 4;  2RS1 4;  1RUE 4;  1NCQ D;  1EAH 4;  2RS5 4;  2HWB 4;  1VBD 4;  1POV 0;  1H8T D;  1AL2 4;  1AR8 4;  1RUH 4;  1VBA 4;  4Q4V 4;  1PO1 4;  1RUG 4;  1VBE 4;  2RM2 4;  4Q4X 4;  1MQT D;  1AR7 4;  1RUJ 4;  2R06 4;  1Z7S 4;  2X5I D;  3J8F 4;  2PLV 4;  1RMU 4;  1RUF 4;  3JBG 4;  1AR9 4;  1PO2 4;  1R08 4;  1R09 4;  1VBC 4;  1RUD 4;  1RUC 4;  3JD7 4;  1VRH 4;  2R07 4;  4GB3 4;  1RHI 4;  1HXS 4;  4Q4Y 4;  4RHV 4;  1PIV 4;  1COV 4;  1HRI 4;  1VBB 4;  1HRV 4;  1PVC 4;  4PDW D;  1BEV 4;  1NA1 D;  1K5M D;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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#similar chains, but unknotted
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1ASJ4

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations