1COV4

Coxsackievirus b3 coat protein
Total Genus 3
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
3
sequence length
68
structure length
55
Chain Sequence
GAQVSTQKTGIHYTNINYYKDAASNSANRQDFTQDPSKFTEPVKDIMIKSLPALN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structure determination of coxsackievirus B3 to 3.5 A resolution.
pubmed doi rcsb
molecule tags Virus
molecule keywords COXSACKIEVIRUS COAT PROTEIN
total genus 3
structure length 55
sequence length 68
ec nomenclature ec 2.7.7.48: RNA-directed RNA polymerase.
pdb deposition date 1994-10-19

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
4 PF02226 Pico_P1A Picornavirus coat protein (VP4)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.80.10 Few Secondary Structures Irregular Rhinovirus 14, subunit 4 Picornavirus coat protein VP4 1cov400
1BEV4 1PIV4 2R044 1R094 1VBD4 1HXS4 1RUC4 2RS54 4Q4X4 1PO24 1VBA4 4Q4Y4 1AR64 1K5MD 4PDWD 1PO14 2X5ID 1H8TD 1AR94 4Q4V4 1NA1D 1VRH4 1VBC4 1RUH4 1VBE4 4GB34 2PLV4 1RVF4 1MQTD 1RUJ4 1RMU4 1OOPD 1NCQD 1EV14 1D4M4 1RUF4 1RUI4 1Z7S4 1R084 2RMU4 1AR74 1PVC4 1RUD4 1POV0 3JBG4 1RHI4 2HWB4 2RR14 2RS34 1COV4 1RUG4 4Q4W4 2R064 1AR84 1EAH4 2R074 3J8F4 2RS14 3JD74 2HWC4 1HRV4 4RHV4 1RUE4 2RM24 1ASJ4 1VBB4 1AL24 1HRI4
chains in the Genus database with same CATH superfamily
2R044 4Q4X4 4PDWD 1PO14 4Q4V4 3SFDA 1RVF4 2R7FA 1EV14 1D4M4 2WU2A 1R084 1RUD4 2B76A 2WS3A 1POV0 1RHI4 1XHZA 1YQ3A 4Q4W4 1XHXA 3AEAA 1EAH4 2WP9A 3AE3A 2RS14 3VRAA 3ABVA 1HRV4 3AEEA 1RUE4 2PZSA 1AL24 3AE5A 3P4RA 1PIV4 1R094 4YSZA 1K5MD 4YTMA 4KX6A 1NENA 1NEKA 4GB34 2PLV4 1RUJ4 1NCQD 1RUI4 1Z7S4 3AE9A 3FI7A 3VR9A 1KF6A 2RR14 1COV4 2R064 1AR84 2R074 2WDVA 2HWC4 3AE4A 1ASJ4 1VBB4 3AEFA 2EX3A 5C2TA 1HRI4 1KFYA 3SUCA 1VBD4 2RS54 1HXS4 4YXDA 1VBA4 4Q4Y4 4YT0A 2X5ID 1AR94 1VRH4 1VBC4 1RUH4 5C3JA 2H88A 1OOPD 3P4PA 2ACZA 1PVC4 4YSXA 3AEGA 2HWB4 2WQYA 2WDQA 3AE7A 3AE2A 3J8F4 3GQHA 3VR8A 3CIRA 4RHV4 1YQ4A 1L0VA 4YSYA 3GQKA 3AEDA 4YTPA 2FBWA 1BEV4 1ZOYA 3AE8A 2WDRA 4YTNA 1RUC4 3VRBA 2WU5A 2PW9A 1PO24 1AR64 1H8TD 1NA1D 3SFEA 1ZP0A 1XI1A 1VBE4 2PYLA 1MQTD 1RMU4 1RUF4 3P4SA 2RMU4 1AR74 3AE6A 3AECA 3JBG4 3P4QA 2RS34 1RUG4 2H89A 3JD74 3AE1A 3AEBA 2PY5A 2PYJA 2RM24
chains in the Genus database with same CATH topology
1BEV4 1PIV4 2R044 1R094 1VBD4 1HXS4 1RUC4 2RS54 4Q4X4 1PO24 1VBA4 4Q4Y4 1AR64 1K5MD 4PDWD 1PO14 2X5ID 1H8TD 1AR94 4Q4V4 1NA1D 1VRH4 1VBC4 1RUH4 1VBE4 4GB34 2PLV4 1RVF4 1MQTD 1RUJ4 1RMU4 1OOPD 1NCQD 1EV14 1D4M4 1RUF4 1RUI4 1Z7S4 1R084 2RMU4 1AR74 1PVC4 1RUD4 1POV0 3JBG4 1RHI4 2HWB4 2RR14 2RS34 1COV4 1RUG4 4Q4W4 2R064 1AR84 1EAH4 2R074 3J8F4 2RS14 3JD74 2HWC4 1HRV4 4RHV4 1RUE4 2RM24 1ASJ4 1VBB4 1AL24 1HRI4
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1BEV 4;  1PIV 4;  2R04 4;  1R09 4;  1VBD 4;  1HXS 4;  1RUC 4;  2RS5 4;  4Q4X 4;  1PO2 4;  1VBA 4;  4Q4Y 4;  1AR6 4;  1K5M D;  4PDW D;  1PO1 4;  2X5I D;  1H8T D;  1AR9 4;  4Q4V 4;  1NA1 D;  1VRH 4;  1VBC 4;  1RUH 4;  1VBE 4;  4GB3 4;  2PLV 4;  1RVF 4;  1MQT D;  1RUJ 4;  1RMU 4;  1OOP D;  1NCQ D;  1EV1 4;  1D4M 4;  1RUF 4;  1RUI 4;  1Z7S 4;  1R08 4;  2RMU 4;  1AR7 4;  1PVC 4;  1RUD 4;  1POV 0;  3JBG 4;  1RHI 4;  2HWB 4;  2RR1 4;  2RS3 4;  1COV 4;  1RUG 4;  4Q4W 4;  2R06 4;  1AR8 4;  1EAH 4;  2R07 4;  3J8F 4;  2RS1 4;  3JD7 4;  2HWC 4;  1HRV 4;  4RHV 4;  1RUE 4;  2RM2 4;  1ASJ 4;  1VBB 4;  1AL2 4;  1HRI 4; 
#chains in the Genus database with same CATH topology
 2R04 4;  4Q4X 4;  4PDW D;  1PO1 4;  4Q4V 4;  3SFD A;  1RVF 4;  2R7F A;  1EV1 4;  1D4M 4;  2WU2 A;  1R08 4;  1RUD 4;  2B76 A;  2WS3 A;  1POV 0;  1RHI 4;  1XHZ A;  1YQ3 A;  4Q4W 4;  1XHX A;  3AEA A;  1EAH 4;  2WP9 A;  3AE3 A;  2RS1 4;  3VRA A;  3ABV A;  1HRV 4;  3AEE A;  1RUE 4;  2PZS A;  1AL2 4;  3AE5 A;  3P4R A;  1PIV 4;  1R09 4;  4YSZ A;  1K5M D;  4YTM A;  4KX6 A;  1NEN A;  1NEK A;  4GB3 4;  2PLV 4;  1RUJ 4;  1NCQ D;  1RUI 4;  1Z7S 4;  3AE9 A;  3FI7 A;  3VR9 A;  1KF6 A;  2RR1 4;  1COV 4;  2R06 4;  1AR8 4;  2R07 4;  2WDV A;  2HWC 4;  3AE4 A;  1ASJ 4;  1VBB 4;  3AEF A;  2EX3 A;  5C2T A;  1HRI 4;  1KFY A;  3SUC A;  1VBD 4;  2RS5 4;  1HXS 4;  4YXD A;  1VBA 4;  4Q4Y 4;  4YT0 A;  2X5I D;  1AR9 4;  1VRH 4;  1VBC 4;  1RUH 4;  5C3J A;  2H88 A;  1OOP D;  3P4P A;  2ACZ A;  1PVC 4;  4YSX A;  3AEG A;  2HWB 4;  2WQY A;  2WDQ A;  3AE7 A;  3AE2 A;  3J8F 4;  3GQH A;  3VR8 A;  3CIR A;  4RHV 4;  1YQ4 A;  1L0V A;  4YSY A;  3GQK A;  3AED A;  4YTP A;  2FBW A;  1BEV 4;  1ZOY A;  3AE8 A;  2WDR A;  4YTN A;  1RUC 4;  3VRB A;  2WU5 A;  2PW9 A;  1PO2 4;  1AR6 4;  1H8T D;  1NA1 D;  3SFE A;  1ZP0 A;  1XI1 A;  1VBE 4;  2PYL A;  1MQT D;  1RMU 4;  1RUF 4;  3P4S A;  2RMU 4;  1AR7 4;  3AE6 A;  3AEC A;  3JBG 4;  3P4Q A;  2RS3 4;  1RUG 4;  2H89 A;  3JD7 4;  3AE1 A;  3AEB A;  2PY5 A;  2PYJ A;  2RM2 4; 
#chains in the Genus database with same CATH homology
 1BEV 4;  1PIV 4;  2R04 4;  1R09 4;  1VBD 4;  1HXS 4;  1RUC 4;  2RS5 4;  4Q4X 4;  1PO2 4;  1VBA 4;  4Q4Y 4;  1AR6 4;  1K5M D;  4PDW D;  1PO1 4;  2X5I D;  1H8T D;  1AR9 4;  4Q4V 4;  1NA1 D;  1VRH 4;  1VBC 4;  1RUH 4;  1VBE 4;  4GB3 4;  2PLV 4;  1RVF 4;  1MQT D;  1RUJ 4;  1RMU 4;  1OOP D;  1NCQ D;  1EV1 4;  1D4M 4;  1RUF 4;  1RUI 4;  1Z7S 4;  1R08 4;  2RMU 4;  1AR7 4;  1PVC 4;  1RUD 4;  1POV 0;  3JBG 4;  1RHI 4;  2HWB 4;  2RR1 4;  2RS3 4;  1COV 4;  1RUG 4;  4Q4W 4;  2R06 4;  1AR8 4;  1EAH 4;  2R07 4;  3J8F 4;  2RS1 4;  3JD7 4;  2HWC 4;  1HRV 4;  4RHV 4;  1RUE 4;  2RM2 4;  1ASJ 4;  1VBB 4;  1AL2 4;  1HRI 4; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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