1D4M | Genus

Total Genus 4

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	4
sequence length	68
structure length	61
Chain Sequence	GAQVSTQKTGAHETSIIHYTNINYYKDAASNSANRQDFTQDPSKFTEPVKDVMIKSLPALN

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Virus
publication title	The crystal structure of coxsackievirus A9: new insights into the uncoating mechanisms of enteroviruses. pubmed doi rcsb
molecule keywords	PROTEIN (COXSACKIEVIRUS A9)
total genus	4
structure length	61
sequence length	68
ec nomenclature	ec 2.7.7.48: RNA-directed RNA polymerase.
pdb deposition date	1999-10-04

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
4	PF02226	Pico_P1A	Picornavirus coat protein (VP4)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
4.10.80.10	Few Secondary Structures	Irregular	Rhinovirus 14, subunit 4	Picornavirus coat protein VP4	1d4m400

4Q4V4 1RUG4 1Z7S4 1BEV4 2RR14 1PVC4 1AL24 1COV4 1H8TD 1RMU4 1RUH4 1AR64 2R074 2RM24 1PIV4 2R044 1MQTD 1PO14 1POV0 2RS54 1D4M4 1RVF4 1K5MD 3JD74 2X5ID 1HRI4 1R084 1RUD4 4Q4W4 1RUI4 1HRV4 2PLV4 1HXS4 1NA1D 4PDWD 2R064 4Q4X4 2HWB4 1AR84 4GB34 1RUE4 2HWC4 1EV14 3J8F4 1VBB4 1AR74 1VBE4 1VBC4 1RUC4 1RUF4 4Q4Y4 1R094 2RS14 1PO24 3JBG4 1EAH4 1OOPD 1AR94 1RHI4 1RUJ4 1VBA4 1VRH4 4RHV4 1ASJ4 2RMU4 1VBD4 2RS34 1NCQD
chains in the Genus database with same CATH superfamily

1NENA 2WP9A 1BEV4 3VRBA 1PVC4 1H8TD 3AEBA 4YTNA 1PO14 3VRAA 1POV0 4YSXA 4YXDA 3SFDA 1K5MD 3AE7A 3JD74 1HRI4 1YQ3A 4Q4W4 2WU5A 3AEAA 3AEEA 4GB34 1NEKA 3FI7A 1RUE4 3J8F4 5C2TA 2B76A 3ABVA 1VBC4 1AR74 2WS3A 3AE5A 4Q4V4 1EAH4 1VRH4 1AR94 1VBA4 2WDRA 2RMU4 2H89A 1VBD4 2RS34 1RUH4 2ACZA 1KF6A 2RR14 1AL24 1RVF4 3AE6A 3AE9A 3GQKA 1RUI4 3P4PA 1HXS4 1NA1D 2HWB4 3AEGA 3P4SA 2WDQA 1ZP0A 1XHZA 1VBE4 1L0VA 2WQYA 3P4QA 3JBG4 3AE4A 3SUCA 2PW9A 1ASJ4 4YSZA 4YTMA 1Z7S4 2PYJA 3AEDA 1AR64 1YQ4A 2RM24 1PIV4 2R044 1MQTD 2RS54 2PY5A 1D4M4 4YSYA 3P4RA 4YTPA 2PLV4 2H88A 1AR84 3GQHA 2PZSA 4KX6A 2FBWA 1EV14 4YT0A 3AE1A 1VBB4 4Q4Y4 3SFEA 1RUF4 1RUJ4 3AEFA 1XI1A 2R7FA 1KFYA 3AE3A 1RUG4 1COV4 1RMU4 2R074 1ZOYA 2X5ID 1R084 1RUD4 5C3JA 1HRV4 2WU2A 4PDWD 2R064 3AE2A 3AE8A 4Q4X4 2PYLA 2EX3A 3CIRA 2HWC4 1RUC4 3VR8A 1R094 2RS14 1PO24 1OOPD 4RHV4 3VR9A 1RHI4 2WDVA 1XHXA 3AECA 1NCQD
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 4Q4V 4;  1RUG 4;  1Z7S 4;  1BEV 4;  2RR1 4;  1PVC 4;  1AL2 4;  1COV 4;  1H8T D;  1RMU 4;  1RUH 4;  1AR6 4;  2R07 4;  2RM2 4;  1PIV 4;  2R04 4;  1MQT D;  1PO1 4;  1POV 0;  2RS5 4;  1D4M 4;  1RVF 4;  1K5M D;  3JD7 4;  2X5I D;  1HRI 4;  1R08 4;  1RUD 4;  4Q4W 4;  1RUI 4;  1HRV 4;  2PLV 4;  1HXS 4;  1NA1 D;  4PDW D;  2R06 4;  4Q4X 4;  2HWB 4;  1AR8 4;  4GB3 4;  1RUE 4;  2HWC 4;  1EV1 4;  3J8F 4;  1VBB 4;  1AR7 4;  1VBE 4;  1VBC 4;  1RUC 4;  1RUF 4;  4Q4Y 4;  1R09 4;  2RS1 4;  1PO2 4;  3JBG 4;  1EAH 4;  1OOP D;  1AR9 4;  1RHI 4;  1RUJ 4;  1VBA 4;  1VRH 4;  4RHV 4;  1ASJ 4;  2RMU 4;  1VBD 4;  2RS3 4;  1NCQ D; 
#chains in the Genus database with same CATH topology
 1NEN A;  2WP9 A;  1BEV 4;  3VRB A;  1PVC 4;  1H8T D;  3AEB A;  4YTN A;  1PO1 4;  3VRA A;  1POV 0;  4YSX A;  4YXD A;  3SFD A;  1K5M D;  3AE7 A;  3JD7 4;  1HRI 4;  1YQ3 A;  4Q4W 4;  2WU5 A;  3AEA A;  3AEE A;  4GB3 4;  1NEK A;  3FI7 A;  1RUE 4;  3J8F 4;  5C2T A;  2B76 A;  3ABV A;  1VBC 4;  1AR7 4;  2WS3 A;  3AE5 A;  4Q4V 4;  1EAH 4;  1VRH 4;  1AR9 4;  1VBA 4;  2WDR A;  2RMU 4;  2H89 A;  1VBD 4;  2RS3 4;  1RUH 4;  2ACZ A;  1KF6 A;  2RR1 4;  1AL2 4;  1RVF 4;  3AE6 A;  3AE9 A;  3GQK A;  1RUI 4;  3P4P A;  1HXS 4;  1NA1 D;  2HWB 4;  3AEG A;  3P4S A;  2WDQ A;  1ZP0 A;  1XHZ A;  1VBE 4;  1L0V A;  2WQY A;  3P4Q A;  3JBG 4;  3AE4 A;  3SUC A;  2PW9 A;  1ASJ 4;  4YSZ A;  4YTM A;  1Z7S 4;  2PYJ A;  3AED A;  1AR6 4;  1YQ4 A;  2RM2 4;  1PIV 4;  2R04 4;  1MQT D;  2RS5 4;  2PY5 A;  1D4M 4;  4YSY A;  3P4R A;  4YTP A;  2PLV 4;  2H88 A;  1AR8 4;  3GQH A;  2PZS A;  4KX6 A;  2FBW A;  1EV1 4;  4YT0 A;  3AE1 A;  1VBB 4;  4Q4Y 4;  3SFE A;  1RUF 4;  1RUJ 4;  3AEF A;  1XI1 A;  2R7F A;  1KFY A;  3AE3 A;  1RUG 4;  1COV 4;  1RMU 4;  2R07 4;  1ZOY A;  2X5I D;  1R08 4;  1RUD 4;  5C3J A;  1HRV 4;  2WU2 A;  4PDW D;  2R06 4;  3AE2 A;  3AE8 A;  4Q4X 4;  2PYL A;  2EX3 A;  3CIR A;  2HWC 4;  1RUC 4;  3VR8 A;  1R09 4;  2RS1 4;  1PO2 4;  1OOP D;  4RHV 4;  3VR9 A;  1RHI 4;  2WDV A;  1XHX A;  3AEC A;  1NCQ D; 
#chains in the Genus database with same CATH homology
 4Q4V 4;  1RUG 4;  1Z7S 4;  1BEV 4;  2RR1 4;  1PVC 4;  1AL2 4;  1COV 4;  1H8T D;  1RMU 4;  1RUH 4;  1AR6 4;  2R07 4;  2RM2 4;  1PIV 4;  2R04 4;  1MQT D;  1PO1 4;  1POV 0;  2RS5 4;  1D4M 4;  1RVF 4;  1K5M D;  3JD7 4;  2X5I D;  1HRI 4;  1R08 4;  1RUD 4;  4Q4W 4;  1RUI 4;  1HRV 4;  2PLV 4;  1HXS 4;  1NA1 D;  4PDW D;  2R06 4;  4Q4X 4;  2HWB 4;  1AR8 4;  4GB3 4;  1RUE 4;  2HWC 4;  1EV1 4;  3J8F 4;  1VBB 4;  1AR7 4;  1VBE 4;  1VBC 4;  1RUC 4;  1RUF 4;  4Q4Y 4;  1R09 4;  2RS1 4;  1PO2 4;  3JBG 4;  1EAH 4;  1OOP D;  1AR9 4;  1RHI 4;  1RUJ 4;  1VBA 4;  1VRH 4;  4RHV 4;  1ASJ 4;  2RMU 4;  1VBD 4;  2RS3 4;  1NCQ D;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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#similar chains, but unknotted
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1D4M4

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations