1EAH4

Pv2l complexed with antiviral agent sch48973
Total Genus 6

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
6
sequence length
68
structure length
68
Chain Sequence
GAQVSSQKVGAHENSNRAYGGSTINYTTINYYRDSASNAASKQDFAQDPSKFTEPIKDVLIKTAPTLN

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS1 (3-7)3H2 (23-25)3H1 (17-19)AH1 (50-54)S2 (26-30)3H3 (36-38)Updating...
connected with : NaN
molecule tags Virus
source organism Human poliovirus 2
publication title Structure of poliovirus type 2 Lansing complexed with antiviral agent SCH48973: comparison of the structural and biological properties of three poliovirus serotypes.
pubmed doi rcsb
molecule keywords POLIOVIRUS TYPE 2 COAT PROTEINS VP1 TO VP4
total genus 6
structure length 68
sequence length 68
ec nomenclature ec 2.7.7.48: RNA-directed RNA polymerase.
pdb deposition date 1997-07-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
4 PF02226 Pico_P1A Picornavirus coat protein (VP4)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.80.10 Few Secondary Structures Irregular Rhinovirus 14, subunit 4 Picornavirus coat protein VP4 1eah400
1BEV4 1HRV4 1VBC4 1PO24 1HXS4 1POV0 1PVC4 2RM24 1AR74 1RUI4 2RMU4 4Q4X4 1NA1D 1AR84 1VBB4 1AR94 1PIV4 2RS14 1NCQD 1R084 1RUD4 1EV14 1R094 4PDWD 1COV4 3J8F4 1RUC4 1MQTD 1RUG4 3JD74 1K5MD 1VBA4 2HWC4 3JBG4 4GB34 1D4M4 1RUE4 1RMU4 1VRH4 2HWB4 1RUH4 1AL24 2R044 1RUJ4 2R074 2RS54 1RVF4 1HRI4 1H8TD 1EAH4 4Q4W4 4Q4Y4 1RUF4 2RS34 1OOPD 2R064 1VBD4 1RHI4 1VBE4 1AR64 1PO14 2RR14 2PLV4 2X5ID 1Z7S4 4Q4V4 1ASJ4 4RHV4
chains in the Genus database with same CATH superfamily
1BEV4 1PO24 1HXS4 2H89A 2EX3A 2WQYA 4KX6A 3GQKA 1NA1D 1AR94 2FBWA 1XI1A 1ZP0A 1L0VA 3AE3A 1RUD4 4YTPA 3AE9A 4YT0A 1EV14 4YTNA 4RHV4 3SFEA 2WP9A 1K5MD 1XHZA 4GB34 1D4M4 1VRH4 2R044 2RS54 1RUH4 2R074 2B76A 1AR64 4YTMA 1PO14 2RR14 1HRV4 1VBC4 1RUI4 3P4QA 2PYLA 2PW9A 4PDWD 5C2TA 3AEDA 2PYJA 2PZSA 2WU2A 1VBA4 3JBG4 1RMU4 1RUJ4 1EAH4 3AE7A 3AE6A 1OOPD 3P4PA 1VBE4 2X5ID 2WDRA 4Q4V4 2RM24 1PVC4 1AR74 2RMU4 1VBB4 3AE4A 2H88A 2WS3A 4YSZA 1KFYA 3CIRA 4YXDA 1COV4 2WDQA 3J8F4 3P4RA 1XHXA 1NEKA 3AEAA 5C3JA 1AL24 3P4SA 3AEEA 1H8TD 3FI7A 4Q4W4 4Q4Y4 1RUF4 1ZOYA 3AEGA 1VBD4 2WDVA 3AE1A 1RHI4 3AEFA 3SFDA 3VR9A 2ACZA 3VRAA 2PLV4 3VR8A 1Z7S4 1KF6A 4YSYA 1POV0 4Q4X4 1AR84 2R7FA 4YSXA 1PIV4 2RS14 3AE2A 1NCQD 3AE5A 1R084 1NENA 1R094 1YQ3A 1RUC4 1MQTD 1RUG4 3JD74 2HWC4 3SUCA 1RUE4 2HWB4 2PY5A 3AECA 3ABVA 1RVF4 1HRI4 3GQHA 2RS34 2WU5A 3VRBA 2R064 3AEBA 1YQ4A 1ASJ4 3AE8A
chains in the Genus database with same CATH topology
1BEV4 1HRV4 1VBC4 1PO24 1HXS4 1POV0 1PVC4 2RM24 1AR74 1RUI4 2RMU4 4Q4X4 1NA1D 1AR84 1VBB4 1AR94 1PIV4 2RS14 1NCQD 1R084 1RUD4 1EV14 1R094 4PDWD 1COV4 3J8F4 1RUC4 1MQTD 1RUG4 3JD74 1K5MD 1VBA4 2HWC4 3JBG4 4GB34 1D4M4 1RUE4 1RMU4 1VRH4 2HWB4 1RUH4 1AL24 2R044 1RUJ4 2R074 2RS54 1RVF4 1HRI4 1H8TD 1EAH4 4Q4W4 4Q4Y4 1RUF4 2RS34 1OOPD 2R064 1VBD4 1RHI4 1VBE4 1AR64 1PO14 2RR14 2PLV4 2X5ID 1Z7S4 4Q4V4 1ASJ4 4RHV4
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1BEV 4;  1HRV 4;  1VBC 4;  1PO2 4;  1HXS 4;  1POV 0;  1PVC 4;  2RM2 4;  1AR7 4;  1RUI 4;  2RMU 4;  4Q4X 4;  1NA1 D;  1AR8 4;  1VBB 4;  1AR9 4;  1PIV 4;  2RS1 4;  1NCQ D;  1R08 4;  1RUD 4;  1EV1 4;  1R09 4;  4PDW D;  1COV 4;  3J8F 4;  1RUC 4;  1MQT D;  1RUG 4;  3JD7 4;  1K5M D;  1VBA 4;  2HWC 4;  3JBG 4;  4GB3 4;  1D4M 4;  1RUE 4;  1RMU 4;  1VRH 4;  2HWB 4;  1RUH 4;  1AL2 4;  2R04 4;  1RUJ 4;  2R07 4;  2RS5 4;  1RVF 4;  1HRI 4;  1H8T D;  1EAH 4;  4Q4W 4;  4Q4Y 4;  1RUF 4;  2RS3 4;  1OOP D;  2R06 4;  1VBD 4;  1RHI 4;  1VBE 4;  1AR6 4;  1PO1 4;  2RR1 4;  2PLV 4;  2X5I D;  1Z7S 4;  4Q4V 4;  1ASJ 4;  4RHV 4; 
#chains in the Genus database with same CATH topology
 1BEV 4;  1PO2 4;  1HXS 4;  2H89 A;  2EX3 A;  2WQY A;  4KX6 A;  3GQK A;  1NA1 D;  1AR9 4;  2FBW A;  1XI1 A;  1ZP0 A;  1L0V A;  3AE3 A;  1RUD 4;  4YTP A;  3AE9 A;  4YT0 A;  1EV1 4;  4YTN A;  4RHV 4;  3SFE A;  2WP9 A;  1K5M D;  1XHZ A;  4GB3 4;  1D4M 4;  1VRH 4;  2R04 4;  2RS5 4;  1RUH 4;  2R07 4;  2B76 A;  1AR6 4;  4YTM A;  1PO1 4;  2RR1 4;  1HRV 4;  1VBC 4;  1RUI 4;  3P4Q A;  2PYL A;  2PW9 A;  4PDW D;  5C2T A;  3AED A;  2PYJ A;  2PZS A;  2WU2 A;  1VBA 4;  3JBG 4;  1RMU 4;  1RUJ 4;  1EAH 4;  3AE7 A;  3AE6 A;  1OOP D;  3P4P A;  1VBE 4;  2X5I D;  2WDR A;  4Q4V 4;  2RM2 4;  1PVC 4;  1AR7 4;  2RMU 4;  1VBB 4;  3AE4 A;  2H88 A;  2WS3 A;  4YSZ A;  1KFY A;  3CIR A;  4YXD A;  1COV 4;  2WDQ A;  3J8F 4;  3P4R A;  1XHX A;  1NEK A;  3AEA A;  5C3J A;  1AL2 4;  3P4S A;  3AEE A;  1H8T D;  3FI7 A;  4Q4W 4;  4Q4Y 4;  1RUF 4;  1ZOY A;  3AEG A;  1VBD 4;  2WDV A;  3AE1 A;  1RHI 4;  3AEF A;  3SFD A;  3VR9 A;  2ACZ A;  3VRA A;  2PLV 4;  3VR8 A;  1Z7S 4;  1KF6 A;  4YSY A;  1POV 0;  4Q4X 4;  1AR8 4;  2R7F A;  4YSX A;  1PIV 4;  2RS1 4;  3AE2 A;  1NCQ D;  3AE5 A;  1R08 4;  1NEN A;  1R09 4;  1YQ3 A;  1RUC 4;  1MQT D;  1RUG 4;  3JD7 4;  2HWC 4;  3SUC A;  1RUE 4;  2HWB 4;  2PY5 A;  3AEC A;  3ABV A;  1RVF 4;  1HRI 4;  3GQH A;  2RS3 4;  2WU5 A;  3VRB A;  2R06 4;  3AEB A;  1YQ4 A;  1ASJ 4;  3AE8 A; 
#chains in the Genus database with same CATH homology
 1BEV 4;  1HRV 4;  1VBC 4;  1PO2 4;  1HXS 4;  1POV 0;  1PVC 4;  2RM2 4;  1AR7 4;  1RUI 4;  2RMU 4;  4Q4X 4;  1NA1 D;  1AR8 4;  1VBB 4;  1AR9 4;  1PIV 4;  2RS1 4;  1NCQ D;  1R08 4;  1RUD 4;  1EV1 4;  1R09 4;  4PDW D;  1COV 4;  3J8F 4;  1RUC 4;  1MQT D;  1RUG 4;  3JD7 4;  1K5M D;  1VBA 4;  2HWC 4;  3JBG 4;  4GB3 4;  1D4M 4;  1RUE 4;  1RMU 4;  1VRH 4;  2HWB 4;  1RUH 4;  1AL2 4;  2R04 4;  1RUJ 4;  2R07 4;  2RS5 4;  1RVF 4;  1HRI 4;  1H8T D;  1EAH 4;  4Q4W 4;  4Q4Y 4;  1RUF 4;  2RS3 4;  1OOP D;  2R06 4;  1VBD 4;  1RHI 4;  1VBE 4;  1AR6 4;  1PO1 4;  2RR1 4;  2PLV 4;  2X5I D;  1Z7S 4;  4Q4V 4;  1ASJ 4;  4RHV 4; 
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