1H8TD

Echovirus 11
Total Genus 1

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
1
sequence length
68
structure length
60
Chain Sequence
GAQVSTQKTGAHESIIHYTNINYYKDAASNSANRQDFTQDPGKFTEPVKDIMVKSLPALN

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

molecule tags Virus
publication title Determination of the Structure of a Decay Accelerating Factor-Binding Clinical Isolate of Echovirus 11 Allows Mapping of Mutants with Altered Receptor Requirements for Infection
pubmed doi rcsb
molecule keywords ECHOVIRUS 11 COAT PROTEIN VP1
total genus 1
structure length 60
sequence length 68
ec nomenclature
pdb deposition date 2001-02-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF02226 Pico_P1A Picornavirus coat protein (VP4)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.80.10 Few Secondary Structures Irregular Rhinovirus 14, subunit 4 Picornavirus coat protein VP4 1h8tD00
4Q4V4 4GB34 2R064 2HWC4 2RR14 1EV14 2PLV4 1EAH4 1VRH4 1RHI4 2RS14 2X5ID 2RM24 4Q4Y4 1AR94 1COV4 1AL24 1AR74 1MQTD 4RHV4 1VBA4 1D4M4 1RUG4 1RUH4 1RUI4 1ASJ4 4Q4W4 4Q4X4 1AR84 1HRI4 1HXS4 2R044 3JD74 1R084 1AR64 1BEV4 1RUJ4 3JBG4 4PDWD 1VBC4 1NCQD 1NA1D 1VBD4 1K5MD 1PO24 1VBE4 2HWB4 1R094 2RS54 1VBB4 2RMU4 1PIV4 3J8F4 1HRV4 1RUC4 1RMU4 1RVF4 1Z7S4 1RUF4 2RS34 1POV0 1OOPD 1RUD4 1PO14 1PVC4 1H8TD 2R074 1RUE4
chains in the Genus database with same CATH superfamily
2R064 3AE5A 2RR14 2WP9A 1EAH4 2PYJA 2RM24 1COV4 3AE8A 3AE1A 4YSYA 1R084 3ABVA 3AE4A 4PDWD 1VBC4 1VBD4 1NA1D 2HWB4 2WU2A 3AE3A 4YSZA 3AECA 1VBB4 3GQKA 1PIV4 1XHZA 3VR9A 1OOPD 5C3JA 4GB34 2ACZA 2PLV4 3SUCA 3P4QA 2PW9A 4Q4Y4 2R7FA 2B76A 5C2TA 1VBA4 1RUG4 1RUH4 4Q4W4 1AR84 1HXS4 3CIRA 1BEV4 2H88A 2H89A 1XI1A 1NCQD 2RS54 1ZP0A 3AEAA 1VBE4 1XHXA 1HRV4 2PY5A 1RVF4 4KX6A 4YXDA 2WQYA 3SFEA 2WDQA 3VRAA 1PVC4 1H8TD 2R074 1RUE4 3P4PA 4Q4V4 2PZSA 1EV14 1NEKA 1RHI4 2RS14 2X5ID 1YQ3A 1AR74 1MQTD 3AEFA 1D4M4 1RUI4 2WU5A 1ASJ4 4YT0A 1NENA 3JD74 3AE7A 3AEEA 1AR64 1RUJ4 3JBG4 3AEBA 1K5MD 4YTMA 3VR8A 3J8F4 2WS3A 3AE6A 2PYLA 1RMU4 4YSXA 1Z7S4 3FI7A 1RUF4 1KFYA 1RUD4 3AEGA 4RHV4 4YTPA 2HWC4 2WDRA 1KF6A 1VRH4 3P4SA 3VRBA 1AR94 1L0VA 1AL24 3P4RA 3AE9A 3SFDA 4Q4X4 1HRI4 2R044 3GQHA 3AE2A 3AEDA 1PO24 2WDVA 1ZOYA 2RMU4 4YTNA 1RUC4 1YQ4A 2RS34 1POV0 2EX3A 1PO14 2FBWA 1R094
chains in the Genus database with same CATH topology
4Q4V4 4GB34 2R064 2HWC4 2RR14 1EV14 2PLV4 1EAH4 1VRH4 1RHI4 2RS14 2X5ID 2RM24 4Q4Y4 1AR94 1COV4 1AL24 1AR74 1MQTD 4RHV4 1VBA4 1D4M4 1RUG4 1RUH4 1RUI4 1ASJ4 4Q4W4 4Q4X4 1AR84 1HRI4 1HXS4 2R044 3JD74 1R084 1AR64 1BEV4 1RUJ4 3JBG4 4PDWD 1VBC4 1NCQD 1NA1D 1VBD4 1K5MD 1PO24 1VBE4 2HWB4 1R094 2RS54 1VBB4 2RMU4 1PIV4 3J8F4 1HRV4 1RUC4 1RMU4 1RVF4 1Z7S4 1RUF4 2RS34 1POV0 1OOPD 1RUD4 1PO14 1PVC4 1H8TD 2R074 1RUE4
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 4Q4V 4;  4GB3 4;  2R06 4;  2HWC 4;  2RR1 4;  1EV1 4;  2PLV 4;  1EAH 4;  1VRH 4;  1RHI 4;  2RS1 4;  2X5I D;  2RM2 4;  4Q4Y 4;  1AR9 4;  1COV 4;  1AL2 4;  1AR7 4;  1MQT D;  4RHV 4;  1VBA 4;  1D4M 4;  1RUG 4;  1RUH 4;  1RUI 4;  1ASJ 4;  4Q4W 4;  4Q4X 4;  1AR8 4;  1HRI 4;  1HXS 4;  2R04 4;  3JD7 4;  1R08 4;  1AR6 4;  1BEV 4;  1RUJ 4;  3JBG 4;  4PDW D;  1VBC 4;  1NCQ D;  1NA1 D;  1VBD 4;  1K5M D;  1PO2 4;  1VBE 4;  2HWB 4;  1R09 4;  2RS5 4;  1VBB 4;  2RMU 4;  1PIV 4;  3J8F 4;  1HRV 4;  1RUC 4;  1RMU 4;  1RVF 4;  1Z7S 4;  1RUF 4;  2RS3 4;  1POV 0;  1OOP D;  1RUD 4;  1PO1 4;  1PVC 4;  1H8T D;  2R07 4;  1RUE 4; 
#chains in the Genus database with same CATH topology
 2R06 4;  3AE5 A;  2RR1 4;  2WP9 A;  1EAH 4;  2PYJ A;  2RM2 4;  1COV 4;  3AE8 A;  3AE1 A;  4YSY A;  1R08 4;  3ABV A;  3AE4 A;  4PDW D;  1VBC 4;  1VBD 4;  1NA1 D;  2HWB 4;  2WU2 A;  3AE3 A;  4YSZ A;  3AEC A;  1VBB 4;  3GQK A;  1PIV 4;  1XHZ A;  3VR9 A;  1OOP D;  5C3J A;  4GB3 4;  2ACZ A;  2PLV 4;  3SUC A;  3P4Q A;  2PW9 A;  4Q4Y 4;  2R7F A;  2B76 A;  5C2T A;  1VBA 4;  1RUG 4;  1RUH 4;  4Q4W 4;  1AR8 4;  1HXS 4;  3CIR A;  1BEV 4;  2H88 A;  2H89 A;  1XI1 A;  1NCQ D;  2RS5 4;  1ZP0 A;  3AEA A;  1VBE 4;  1XHX A;  1HRV 4;  2PY5 A;  1RVF 4;  4KX6 A;  4YXD A;  2WQY A;  3SFE A;  2WDQ A;  3VRA A;  1PVC 4;  1H8T D;  2R07 4;  1RUE 4;  3P4P A;  4Q4V 4;  2PZS A;  1EV1 4;  1NEK A;  1RHI 4;  2RS1 4;  2X5I D;  1YQ3 A;  1AR7 4;  1MQT D;  3AEF A;  1D4M 4;  1RUI 4;  2WU5 A;  1ASJ 4;  4YT0 A;  1NEN A;  3JD7 4;  3AE7 A;  3AEE A;  1AR6 4;  1RUJ 4;  3JBG 4;  3AEB A;  1K5M D;  4YTM A;  3VR8 A;  3J8F 4;  2WS3 A;  3AE6 A;  2PYL A;  1RMU 4;  4YSX A;  1Z7S 4;  3FI7 A;  1RUF 4;  1KFY A;  1RUD 4;  3AEG A;  4RHV 4;  4YTP A;  2HWC 4;  2WDR A;  1KF6 A;  1VRH 4;  3P4S A;  3VRB A;  1AR9 4;  1L0V A;  1AL2 4;  3P4R A;  3AE9 A;  3SFD A;  4Q4X 4;  1HRI 4;  2R04 4;  3GQH A;  3AE2 A;  3AED A;  1PO2 4;  2WDV A;  1ZOY A;  2RMU 4;  4YTN A;  1RUC 4;  1YQ4 A;  2RS3 4;  1POV 0;  2EX3 A;  1PO1 4;  2FBW A;  1R09 4; 
#chains in the Genus database with same CATH homology
 4Q4V 4;  4GB3 4;  2R06 4;  2HWC 4;  2RR1 4;  1EV1 4;  2PLV 4;  1EAH 4;  1VRH 4;  1RHI 4;  2RS1 4;  2X5I D;  2RM2 4;  4Q4Y 4;  1AR9 4;  1COV 4;  1AL2 4;  1AR7 4;  1MQT D;  4RHV 4;  1VBA 4;  1D4M 4;  1RUG 4;  1RUH 4;  1RUI 4;  1ASJ 4;  4Q4W 4;  4Q4X 4;  1AR8 4;  1HRI 4;  1HXS 4;  2R04 4;  3JD7 4;  1R08 4;  1AR6 4;  1BEV 4;  1RUJ 4;  3JBG 4;  4PDW D;  1VBC 4;  1NCQ D;  1NA1 D;  1VBD 4;  1K5M D;  1PO2 4;  1VBE 4;  2HWB 4;  1R09 4;  2RS5 4;  1VBB 4;  2RMU 4;  1PIV 4;  3J8F 4;  1HRV 4;  1RUC 4;  1RMU 4;  1RVF 4;  1Z7S 4;  1RUF 4;  2RS3 4;  1POV 0;  1OOP D;  1RUD 4;  1PO1 4;  1PVC 4;  1H8T D;  2R07 4;  1RUE 4; 
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similar chains in the pdb database (?% sequence similarity)

 
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