1HXS4

Crystal structure of mahoney strain of poliovirus at 2.2a resolution
Total Genus 4
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
4
sequence length
68
structure length
68
Chain Sequence
GAQVSSQKVGAHENSNRAYGGSTINYTTINYYRDSASNAASKQDFSQDPSKFTEPIKDVLIKTAPMLN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Virus
publication title Ab initio phasing of high-symmetry macromolecular complexes: successful phasing of authentic poliovirus data to 3.0 A resolution.
pubmed doi rcsb
molecule keywords GENOME POLYPROTEIN, COAT PROTEIN VP1
total genus 4
structure length 68
sequence length 68
ec nomenclature ec 2.7.7.48: RNA-directed RNA polymerase.
pdb deposition date 2001-01-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
4 PF02226 Pico_P1A Picornavirus coat protein (VP4)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.80.10 Few Secondary Structures Irregular Rhinovirus 14, subunit 4 Picornavirus coat protein VP4 1hxs400
1RHI4 1VBA4 1AL24 1PVC4 4RHV4 1D4M4 3J8F4 1AR84 1R094 1NCQD 1NA1D 1POV0 1RUC4 3JBG4 1RVF4 1RUH4 4Q4X4 1R084 2RS54 1AR94 1MQTD 1HXS4 1VBB4 1ASJ4 1RUE4 1VBC4 2RMU4 2RR14 1COV4 1RMU4 2HWB4 4PDWD 1EV14 1RUF4 1OOPD 1PIV4 2R044 2R074 4Q4W4 1BEV4 1EAH4 1VBD4 2R064 1Z7S4 2RS14 1RUG4 2RM24 1RUD4 1HRI4 1RUJ4 1VBE4 2RS34 1HRV4 4Q4Y4 1VRH4 1RUI4 1AR64 2HWC4 1H8TD 1K5MD 1AR74 1PO24 2PLV4 2X5ID 3JD74 4Q4V4 4GB34 1PO14
chains in the Genus database with same CATH superfamily
2WU2A 1XHZA 3J8F4 1AR84 1L0VA 4YSYA 2FBWA 1NCQD 1NA1D 1RUC4 2H88A 1VBC4 2RMU4 1COV4 2HWB4 2WU5A 2RS14 3AEGA 1RUD4 3AEBA 2RS34 1H8TD 3JD74 1AR74 3AE7A 4Q4X4 1RUF4 1PO14 1RHI4 3AE5A 1PVC4 3SFEA 1POV0 2WQYA 3JBG4 2WS3A 1RUH4 1R084 3AE3A 1AR94 3SFDA 1MQTD 1HXS4 3SUCA 1ASJ4 3AE8A 3AEAA 5C3JA 1ZOYA 4KX6A 1EV14 1KFYA 2WDRA 2R074 4YSXA 4Q4W4 1BEV4 2PYLA 3GQHA 3CIRA 1RUJ4 1VBE4 2HWC4 1YQ4A 3VRAA 3AE9A 1VBA4 1XHXA 4RHV4 3P4RA 1D4M4 3AE6A 4YTMA 1ZP0A 2WDQA 1YQ3A 1RVF4 4YTPA 2EX3A 2RS54 1VBB4 2PZSA 3FI7A 1RMU4 3GQKA 3P4SA 4PDWD 2R044 3AEFA 2R7FA 3AEEA 1EAH4 3AE2A 4YSZA 1HRV4 1RUG4 2RM24 1VRH4 1RUI4 1AR64 1PO24 2PLV4 2WDVA 2ACZA 2PW9A 1KF6A 4YTNA 1NEKA 2B76A 1AL24 3P4PA 1R094 3AECA 4YXDA 3AEDA 3ABVA 3P4QA 5C2TA 1RUE4 2RR14 1XI1A 2PY5A 3AE1A 1NENA 2WP9A 4YT0A 1OOPD 1PIV4 3AE4A 2PYJA 3VRBA 1VBD4 2R064 1Z7S4 3VR9A 1HRI4 4Q4Y4 1K5MD 2H89A 2X5ID 4Q4V4 3VR8A 4GB34
chains in the Genus database with same CATH topology
1RHI4 1VBA4 1AL24 1PVC4 4RHV4 1D4M4 3J8F4 1AR84 1R094 1NCQD 1NA1D 1POV0 1RUC4 3JBG4 1RVF4 1RUH4 4Q4X4 1R084 2RS54 1AR94 1MQTD 1HXS4 1VBB4 1ASJ4 1RUE4 1VBC4 2RMU4 2RR14 1COV4 1RMU4 2HWB4 4PDWD 1EV14 1RUF4 1OOPD 1PIV4 2R044 2R074 4Q4W4 1BEV4 1EAH4 1VBD4 2R064 1Z7S4 2RS14 1RUG4 2RM24 1RUD4 1HRI4 1RUJ4 1VBE4 2RS34 1HRV4 4Q4Y4 1VRH4 1RUI4 1AR64 2HWC4 1H8TD 1K5MD 1AR74 1PO24 2PLV4 2X5ID 3JD74 4Q4V4 4GB34 1PO14
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1RHI 4;  1VBA 4;  1AL2 4;  1PVC 4;  4RHV 4;  1D4M 4;  3J8F 4;  1AR8 4;  1R09 4;  1NCQ D;  1NA1 D;  1POV 0;  1RUC 4;  3JBG 4;  1RVF 4;  1RUH 4;  4Q4X 4;  1R08 4;  2RS5 4;  1AR9 4;  1MQT D;  1HXS 4;  1VBB 4;  1ASJ 4;  1RUE 4;  1VBC 4;  2RMU 4;  2RR1 4;  1COV 4;  1RMU 4;  2HWB 4;  4PDW D;  1EV1 4;  1RUF 4;  1OOP D;  1PIV 4;  2R04 4;  2R07 4;  4Q4W 4;  1BEV 4;  1EAH 4;  1VBD 4;  2R06 4;  1Z7S 4;  2RS1 4;  1RUG 4;  2RM2 4;  1RUD 4;  1HRI 4;  1RUJ 4;  1VBE 4;  2RS3 4;  1HRV 4;  4Q4Y 4;  1VRH 4;  1RUI 4;  1AR6 4;  2HWC 4;  1H8T D;  1K5M D;  1AR7 4;  1PO2 4;  2PLV 4;  2X5I D;  3JD7 4;  4Q4V 4;  4GB3 4;  1PO1 4; 
#chains in the Genus database with same CATH topology
 2WU2 A;  1XHZ A;  3J8F 4;  1AR8 4;  1L0V A;  4YSY A;  2FBW A;  1NCQ D;  1NA1 D;  1RUC 4;  2H88 A;  1VBC 4;  2RMU 4;  1COV 4;  2HWB 4;  2WU5 A;  2RS1 4;  3AEG A;  1RUD 4;  3AEB A;  2RS3 4;  1H8T D;  3JD7 4;  1AR7 4;  3AE7 A;  4Q4X 4;  1RUF 4;  1PO1 4;  1RHI 4;  3AE5 A;  1PVC 4;  3SFE A;  1POV 0;  2WQY A;  3JBG 4;  2WS3 A;  1RUH 4;  1R08 4;  3AE3 A;  1AR9 4;  3SFD A;  1MQT D;  1HXS 4;  3SUC A;  1ASJ 4;  3AE8 A;  3AEA A;  5C3J A;  1ZOY A;  4KX6 A;  1EV1 4;  1KFY A;  2WDR A;  2R07 4;  4YSX A;  4Q4W 4;  1BEV 4;  2PYL A;  3GQH A;  3CIR A;  1RUJ 4;  1VBE 4;  2HWC 4;  1YQ4 A;  3VRA A;  3AE9 A;  1VBA 4;  1XHX A;  4RHV 4;  3P4R A;  1D4M 4;  3AE6 A;  4YTM A;  1ZP0 A;  2WDQ A;  1YQ3 A;  1RVF 4;  4YTP A;  2EX3 A;  2RS5 4;  1VBB 4;  2PZS A;  3FI7 A;  1RMU 4;  3GQK A;  3P4S A;  4PDW D;  2R04 4;  3AEF A;  2R7F A;  3AEE A;  1EAH 4;  3AE2 A;  4YSZ A;  1HRV 4;  1RUG 4;  2RM2 4;  1VRH 4;  1RUI 4;  1AR6 4;  1PO2 4;  2PLV 4;  2WDV A;  2ACZ A;  2PW9 A;  1KF6 A;  4YTN A;  1NEK A;  2B76 A;  1AL2 4;  3P4P A;  1R09 4;  3AEC A;  4YXD A;  3AED A;  3ABV A;  3P4Q A;  5C2T A;  1RUE 4;  2RR1 4;  1XI1 A;  2PY5 A;  3AE1 A;  1NEN A;  2WP9 A;  4YT0 A;  1OOP D;  1PIV 4;  3AE4 A;  2PYJ A;  3VRB A;  1VBD 4;  2R06 4;  1Z7S 4;  3VR9 A;  1HRI 4;  4Q4Y 4;  1K5M D;  2H89 A;  2X5I D;  4Q4V 4;  3VR8 A;  4GB3 4; 
#chains in the Genus database with same CATH homology
 1RHI 4;  1VBA 4;  1AL2 4;  1PVC 4;  4RHV 4;  1D4M 4;  3J8F 4;  1AR8 4;  1R09 4;  1NCQ D;  1NA1 D;  1POV 0;  1RUC 4;  3JBG 4;  1RVF 4;  1RUH 4;  4Q4X 4;  1R08 4;  2RS5 4;  1AR9 4;  1MQT D;  1HXS 4;  1VBB 4;  1ASJ 4;  1RUE 4;  1VBC 4;  2RMU 4;  2RR1 4;  1COV 4;  1RMU 4;  2HWB 4;  4PDW D;  1EV1 4;  1RUF 4;  1OOP D;  1PIV 4;  2R04 4;  2R07 4;  4Q4W 4;  1BEV 4;  1EAH 4;  1VBD 4;  2R06 4;  1Z7S 4;  2RS1 4;  1RUG 4;  2RM2 4;  1RUD 4;  1HRI 4;  1RUJ 4;  1VBE 4;  2RS3 4;  1HRV 4;  4Q4Y 4;  1VRH 4;  1RUI 4;  1AR6 4;  2HWC 4;  1H8T D;  1K5M D;  1AR7 4;  1PO2 4;  2PLV 4;  2X5I D;  3JD7 4;  4Q4V 4;  4GB3 4;  1PO1 4; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...