1HXS4

Crystal structure of mahoney strain of poliovirus at 2.2a resolution
Total Genus 4
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
4
sequence length
68
structure length
68
Chain Sequence
GAQVSSQKVGAHENSNRAYGGSTINYTTINYYRDSASNAASKQDFSQDPSKFTEPIKDVLIKTAPMLN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Ab initio phasing of high-symmetry macromolecular complexes: successful phasing of authentic poliovirus data to 3.0 A resolution.
pubmed doi rcsb
molecule keywords GENOME POLYPROTEIN, COAT PROTEIN VP1
molecule tags Virus
total genus 4
structure length 68
sequence length 68
ec nomenclature ec 2.7.7.48: RNA-directed RNA polymerase.
pdb deposition date 2001-01-16

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
4 PF02226 Pico_P1A Picornavirus coat protein (VP4)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.80.10 Few Secondary Structures Irregular Rhinovirus 14, subunit 4 Picornavirus coat protein VP4 1hxs400
2RM24 1HRV4 4GB34 1COV4 4PDWD 1PIV4 2HWC4 1D4M4 2PLV4 1EAH4 2RR14 2X5ID 1NCQD 1POV0 1RMU4 1RUF4 1H8TD 1RUH4 1Z7S4 2RMU4 1VBC4 4Q4Y4 1AL24 1VBD4 4RHV4 1VBA4 2R074 1PO24 2RS34 1AR74 4Q4X4 1HRI4 1AR84 1OOPD 4Q4W4 1HXS4 1RUD4 2R064 2RS14 1BEV4 1RUG4 2R044 1RVF4 1VBE4 4Q4V4 1VBB4 1R084 1PO14 1MQTD 3J8F4 2RS54 2HWB4 1RUE4 1VRH4 3JBG4 1AR64 1RUI4 1RHI4 1AR94 1RUJ4 1NA1D 3JD74 1RUC4 1EV14 1ASJ4 1K5MD 1R094 1PVC4
chains in the Genus database with same CATH superfamily
4PDWD 4YSXA 2WDRA 2WU2A 3AEAA 2X5ID 1NCQD 1RUF4 4Q4Y4 4YTPA 3AEEA 1VBC4 2H89A 1AL24 3SUCA 2B76A 1AR84 4Q4W4 1BEV4 2FBWA 1MQTD 1ZOYA 3AE3A 2RS54 3J8F4 1AR64 1L0VA 5C3JA 1RUC4 3AE6A 3AECA 3GQHA 1K5MD 4YTMA 3ABVA 3VR8A 1NEKA 2RM24 2H88A 1COV4 3AEFA 4GB34 2HWC4 3AE5A 2WDQA 1NENA 3P4RA 1RUH4 2WDVA 1H8TD 2PW9A 3CIRA 1VBD4 2RS34 1XI1A 1AR74 4Q4X4 3AE7A 3SFDA 2PZSA 1HRI4 1RUD4 2EX3A 4YT0A 1RVF4 1VBB4 1R084 1PO14 1RUE4 1EV14 2WP9A 3AE8A 1ASJ4 2RR14 1R094 1HRV4 1PIV4 1D4M4 1POV0 5C2TA 4RHV4 1VBA4 2R074 1XHXA 3P4SA 1OOPD 3SFEA 1HXS4 2PY5A 4YXDA 2R064 3GQKA 1RUG4 1KF6A 1VRH4 3AE9A 3AE4A 3JBG4 2PYLA 1KFYA 1AR94 3FI7A 4YSYA 2WQYA 4Q4V4 1YQ3A 3AE1A 1ZP0A 3VRAA 2PLV4 1EAH4 2R7FA 1RMU4 1XHZA 2RMU4 1Z7S4 3AEGA 1PO24 3AEBA 2ACZA 4YTNA 1YQ4A 2RS14 2R044 2PYJA 1VBE4 3VRBA 3AEDA 2WS3A 2HWB4 1RUI4 1RHI4 1RUJ4 4KX6A 1NA1D 3JD74 3P4QA 3VR9A 3P4PA 2WU5A 4YSZA 3AE2A 1PVC4
chains in the Genus database with same CATH topology
2RM24 1HRV4 4GB34 1COV4 4PDWD 1PIV4 2HWC4 1D4M4 2PLV4 1EAH4 2RR14 2X5ID 1NCQD 1POV0 1RMU4 1RUF4 1H8TD 1RUH4 1Z7S4 2RMU4 1VBC4 4Q4Y4 1AL24 1VBD4 4RHV4 1VBA4 2R074 1PO24 2RS34 1AR74 4Q4X4 1HRI4 1AR84 1OOPD 4Q4W4 1HXS4 1RUD4 2R064 2RS14 1BEV4 1RUG4 2R044 1RVF4 1VBE4 4Q4V4 1VBB4 1R084 1PO14 1MQTD 3J8F4 2RS54 2HWB4 1RUE4 1VRH4 3JBG4 1AR64 1RUI4 1RHI4 1AR94 1RUJ4 1NA1D 3JD74 1RUC4 1EV14 1ASJ4 1K5MD 1R094 1PVC4
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2RM2 4;  1HRV 4;  4GB3 4;  1COV 4;  4PDW D;  1PIV 4;  2HWC 4;  1D4M 4;  2PLV 4;  1EAH 4;  2RR1 4;  2X5I D;  1NCQ D;  1POV 0;  1RMU 4;  1RUF 4;  1H8T D;  1RUH 4;  1Z7S 4;  2RMU 4;  1VBC 4;  4Q4Y 4;  1AL2 4;  1VBD 4;  4RHV 4;  1VBA 4;  2R07 4;  1PO2 4;  2RS3 4;  1AR7 4;  4Q4X 4;  1HRI 4;  1AR8 4;  1OOP D;  4Q4W 4;  1HXS 4;  1RUD 4;  2R06 4;  2RS1 4;  1BEV 4;  1RUG 4;  2R04 4;  1RVF 4;  1VBE 4;  4Q4V 4;  1VBB 4;  1R08 4;  1PO1 4;  1MQT D;  3J8F 4;  2RS5 4;  2HWB 4;  1RUE 4;  1VRH 4;  3JBG 4;  1AR6 4;  1RUI 4;  1RHI 4;  1AR9 4;  1RUJ 4;  1NA1 D;  3JD7 4;  1RUC 4;  1EV1 4;  1ASJ 4;  1K5M D;  1R09 4;  1PVC 4; 
#chains in the Genus database with same CATH topology
 4PDW D;  4YSX A;  2WDR A;  2WU2 A;  3AEA A;  2X5I D;  1NCQ D;  1RUF 4;  4Q4Y 4;  4YTP A;  3AEE A;  1VBC 4;  2H89 A;  1AL2 4;  3SUC A;  2B76 A;  1AR8 4;  4Q4W 4;  1BEV 4;  2FBW A;  1MQT D;  1ZOY A;  3AE3 A;  2RS5 4;  3J8F 4;  1AR6 4;  1L0V A;  5C3J A;  1RUC 4;  3AE6 A;  3AEC A;  3GQH A;  1K5M D;  4YTM A;  3ABV A;  3VR8 A;  1NEK A;  2RM2 4;  2H88 A;  1COV 4;  3AEF A;  4GB3 4;  2HWC 4;  3AE5 A;  2WDQ A;  1NEN A;  3P4R A;  1RUH 4;  2WDV A;  1H8T D;  2PW9 A;  3CIR A;  1VBD 4;  2RS3 4;  1XI1 A;  1AR7 4;  4Q4X 4;  3AE7 A;  3SFD A;  2PZS A;  1HRI 4;  1RUD 4;  2EX3 A;  4YT0 A;  1RVF 4;  1VBB 4;  1R08 4;  1PO1 4;  1RUE 4;  1EV1 4;  2WP9 A;  3AE8 A;  1ASJ 4;  2RR1 4;  1R09 4;  1HRV 4;  1PIV 4;  1D4M 4;  1POV 0;  5C2T A;  4RHV 4;  1VBA 4;  2R07 4;  1XHX A;  3P4S A;  1OOP D;  3SFE A;  1HXS 4;  2PY5 A;  4YXD A;  2R06 4;  3GQK A;  1RUG 4;  1KF6 A;  1VRH 4;  3AE9 A;  3AE4 A;  3JBG 4;  2PYL A;  1KFY A;  1AR9 4;  3FI7 A;  4YSY A;  2WQY A;  4Q4V 4;  1YQ3 A;  3AE1 A;  1ZP0 A;  3VRA A;  2PLV 4;  1EAH 4;  2R7F A;  1RMU 4;  1XHZ A;  2RMU 4;  1Z7S 4;  3AEG A;  1PO2 4;  3AEB A;  2ACZ A;  4YTN A;  1YQ4 A;  2RS1 4;  2R04 4;  2PYJ A;  1VBE 4;  3VRB A;  3AED A;  2WS3 A;  2HWB 4;  1RUI 4;  1RHI 4;  1RUJ 4;  4KX6 A;  1NA1 D;  3JD7 4;  3P4Q A;  3VR9 A;  3P4P A;  2WU5 A;  4YSZ A;  3AE2 A;  1PVC 4; 
#chains in the Genus database with same CATH homology
 2RM2 4;  1HRV 4;  4GB3 4;  1COV 4;  4PDW D;  1PIV 4;  2HWC 4;  1D4M 4;  2PLV 4;  1EAH 4;  2RR1 4;  2X5I D;  1NCQ D;  1POV 0;  1RMU 4;  1RUF 4;  1H8T D;  1RUH 4;  1Z7S 4;  2RMU 4;  1VBC 4;  4Q4Y 4;  1AL2 4;  1VBD 4;  4RHV 4;  1VBA 4;  2R07 4;  1PO2 4;  2RS3 4;  1AR7 4;  4Q4X 4;  1HRI 4;  1AR8 4;  1OOP D;  4Q4W 4;  1HXS 4;  1RUD 4;  2R06 4;  2RS1 4;  1BEV 4;  1RUG 4;  2R04 4;  1RVF 4;  1VBE 4;  4Q4V 4;  1VBB 4;  1R08 4;  1PO1 4;  1MQT D;  3J8F 4;  2RS5 4;  2HWB 4;  1RUE 4;  1VRH 4;  3JBG 4;  1AR6 4;  1RUI 4;  1RHI 4;  1AR9 4;  1RUJ 4;  1NA1 D;  3JD7 4;  1RUC 4;  1EV1 4;  1ASJ 4;  1K5M D;  1R09 4;  1PVC 4; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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