1NA1 | Genus

Total Genus 2

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	2
sequence length	40
structure length	40
Chain Sequence	INYYKDAASTSSAGQSLSMDPSKFTEPVKDLMLKGAPALN

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Virus
publication title	Structural and virological studies of the stages of virus replication that are affected by antirhinovirus compounds pubmed doi rcsb
molecule keywords	Coat protein VP1
total genus	2
structure length	40
sequence length	40
ec nomenclature	ec 2.7.7.48: RNA-directed RNA polymerase.
pdb deposition date	2002-11-26

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
D	PF02226	Pico_P1A	Picornavirus coat protein (VP4)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
4.10.80.10	Few Secondary Structures	Irregular	Rhinovirus 14, subunit 4	Picornavirus coat protein VP4	1na1D00

2RS34 1RHI4 1RMU4 1VBD4 1VBC4 1PIV4 1RUD4 3JBG4 4Q4X4 1HRI4 4Q4W4 1AL24 1VRH4 2RS54 1EAH4 1PO24 1POV0 1AR64 1PVC4 1RUC4 1VBB4 2R044 1AR74 2RR14 1COV4 1RVF4 4Q4Y4 1HRV4 1D4M4 3JD74 1OOPD 1R084 1ASJ4 1RUI4 1HXS4 4GB34 1RUF4 2RS14 1RUJ4 1MQTD 3J8F4 1EV14 2PLV4 2R074 4RHV4 2RMU4 1R094 1AR84 1RUH4 1RUE4 1Z7S4 1BEV4 1RUG4 4PDWD 1VBE4 1NCQD 1K5MD 4Q4V4 2R064 1PO14 2X5ID 1AR94 2HWC4 1NA1D 1VBA4 1H8TD 2HWB4 2RM24
chains in the Genus database with same CATH superfamily

1RHI4 4YSXA 3AEAA 1RUD4 2PW9A 2PYJA 1HRI4 3AE4A 2WP9A 1NENA 1AR64 3GQHA 1AR74 2H88A 1XHXA 3JD74 3AEDA 1RUI4 1HXS4 1XHZA 1MQTD 2R074 2PLV4 2RMU4 3AE6A 1AR84 3AE7A 1ZOYA 1BEV4 4PDWD 3AE9A 1K5MD 3P4RA 2WU5A 3ABVA 1VBA4 3VR8A 1H8TD 2B76A 3AE1A 2RM24 3CIRA 1VBC4 2PY5A 4YTNA 4YTPA 1VRH4 1NEKA 5C3JA 1PO24 2WU2A 1VBB4 3P4QA 4Q4Y4 3AE5A 3AEFA 1OOPD 3P4PA 1ASJ4 4GB34 1YQ3A 1EV14 3VRBA 3AE2A 4Q4V4 3VR9A 1PO14 4YSZA 2PZSA 2RS34 2WS3A 3AEGA 1RMU4 1VBD4 1PIV4 1YQ4A 3JBG4 4Q4X4 3SFEA 2R7FA 2RS54 1EAH4 1PVC4 1POV0 2R044 1COV4 1RVF4 1HRV4 1D4M4 4YSYA 1ZP0A 1R084 3FI7A 1RUJ4 4RHV4 2WDVA 1KFYA 1R094 2EX3A 1RUH4 1RUE4 1XI1A 3SFDA 3SUCA 4YXDA 2FBWA 2WDRA 2X5ID 3AECA 3AE3A 4Q4W4 1AL24 2RR14 4YT0A 1RUC4 2ACZA 1RUF4 2RS14 3AE8A 3J8F4 1L0VA 4YTMA 3P4SA 3AEEA 1Z7S4 5C2TA 4KX6A 1RUG4 3GQKA 1VBE4 1NCQD 3VRAA 2H89A 2R064 2WQYA 1AR94 2HWC4 1NA1D 2WDQA 2HWB4 2PYLA 1KF6A 3AEBA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 2RS3 4;  1RHI 4;  1RMU 4;  1VBD 4;  1VBC 4;  1PIV 4;  1RUD 4;  3JBG 4;  4Q4X 4;  1HRI 4;  4Q4W 4;  1AL2 4;  1VRH 4;  2RS5 4;  1EAH 4;  1PO2 4;  1POV 0;  1AR6 4;  1PVC 4;  1RUC 4;  1VBB 4;  2R04 4;  1AR7 4;  2RR1 4;  1COV 4;  1RVF 4;  4Q4Y 4;  1HRV 4;  1D4M 4;  3JD7 4;  1OOP D;  1R08 4;  1ASJ 4;  1RUI 4;  1HXS 4;  4GB3 4;  1RUF 4;  2RS1 4;  1RUJ 4;  1MQT D;  3J8F 4;  1EV1 4;  2PLV 4;  2R07 4;  4RHV 4;  2RMU 4;  1R09 4;  1AR8 4;  1RUH 4;  1RUE 4;  1Z7S 4;  1BEV 4;  1RUG 4;  4PDW D;  1VBE 4;  1NCQ D;  1K5M D;  4Q4V 4;  2R06 4;  1PO1 4;  2X5I D;  1AR9 4;  2HWC 4;  1NA1 D;  1VBA 4;  1H8T D;  2HWB 4;  2RM2 4; 
#chains in the Genus database with same CATH topology
 1RHI 4;  4YSX A;  3AEA A;  1RUD 4;  2PW9 A;  2PYJ A;  1HRI 4;  3AE4 A;  2WP9 A;  1NEN A;  1AR6 4;  3GQH A;  1AR7 4;  2H88 A;  1XHX A;  3JD7 4;  3AED A;  1RUI 4;  1HXS 4;  1XHZ A;  1MQT D;  2R07 4;  2PLV 4;  2RMU 4;  3AE6 A;  1AR8 4;  3AE7 A;  1ZOY A;  1BEV 4;  4PDW D;  3AE9 A;  1K5M D;  3P4R A;  2WU5 A;  3ABV A;  1VBA 4;  3VR8 A;  1H8T D;  2B76 A;  3AE1 A;  2RM2 4;  3CIR A;  1VBC 4;  2PY5 A;  4YTN A;  4YTP A;  1VRH 4;  1NEK A;  5C3J A;  1PO2 4;  2WU2 A;  1VBB 4;  3P4Q A;  4Q4Y 4;  3AE5 A;  3AEF A;  1OOP D;  3P4P A;  1ASJ 4;  4GB3 4;  1YQ3 A;  1EV1 4;  3VRB A;  3AE2 A;  4Q4V 4;  3VR9 A;  1PO1 4;  4YSZ A;  2PZS A;  2RS3 4;  2WS3 A;  3AEG A;  1RMU 4;  1VBD 4;  1PIV 4;  1YQ4 A;  3JBG 4;  4Q4X 4;  3SFE A;  2R7F A;  2RS5 4;  1EAH 4;  1PVC 4;  1POV 0;  2R04 4;  1COV 4;  1RVF 4;  1HRV 4;  1D4M 4;  4YSY A;  1ZP0 A;  1R08 4;  3FI7 A;  1RUJ 4;  4RHV 4;  2WDV A;  1KFY A;  1R09 4;  2EX3 A;  1RUH 4;  1RUE 4;  1XI1 A;  3SFD A;  3SUC A;  4YXD A;  2FBW A;  2WDR A;  2X5I D;  3AEC A;  3AE3 A;  4Q4W 4;  1AL2 4;  2RR1 4;  4YT0 A;  1RUC 4;  2ACZ A;  1RUF 4;  2RS1 4;  3AE8 A;  3J8F 4;  1L0V A;  4YTM A;  3P4S A;  3AEE A;  1Z7S 4;  5C2T A;  4KX6 A;  1RUG 4;  3GQK A;  1VBE 4;  1NCQ D;  3VRA A;  2H89 A;  2R06 4;  2WQY A;  1AR9 4;  2HWC 4;  1NA1 D;  2WDQ A;  2HWB 4;  2PYL A;  1KF6 A;  3AEB A; 
#chains in the Genus database with same CATH homology
 2RS3 4;  1RHI 4;  1RMU 4;  1VBD 4;  1VBC 4;  1PIV 4;  1RUD 4;  3JBG 4;  4Q4X 4;  1HRI 4;  4Q4W 4;  1AL2 4;  1VRH 4;  2RS5 4;  1EAH 4;  1PO2 4;  1POV 0;  1AR6 4;  1PVC 4;  1RUC 4;  1VBB 4;  2R04 4;  1AR7 4;  2RR1 4;  1COV 4;  1RVF 4;  4Q4Y 4;  1HRV 4;  1D4M 4;  3JD7 4;  1OOP D;  1R08 4;  1ASJ 4;  1RUI 4;  1HXS 4;  4GB3 4;  1RUF 4;  2RS1 4;  1RUJ 4;  1MQT D;  3J8F 4;  1EV1 4;  2PLV 4;  2R07 4;  4RHV 4;  2RMU 4;  1R09 4;  1AR8 4;  1RUH 4;  1RUE 4;  1Z7S 4;  1BEV 4;  1RUG 4;  4PDW D;  1VBE 4;  1NCQ D;  1K5M D;  4Q4V 4;  2R06 4;  1PO1 4;  2X5I D;  1AR9 4;  2HWC 4;  1NA1 D;  1VBA 4;  1H8T D;  2HWB 4;  2RM2 4;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1NA1D

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations