1PIV | Genus

Total Genus 4

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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	4
sequence length	68
structure length	62
Chain Sequence	GAQVSSQKVGAHENSSTINYTTINYYKDSASNAASKQDYSQDPSKFTEPLKDVLIKTAPALN

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Virus
source organism	Poliovirus type 3 (strains p3/leon/37 and p3/leon 12a[1]b)
publication title	Binding of the antiviral drug WIN51711 to the sabin strain of type 3 poliovirus: structural comparison with drug binding in rhinovirus 14. pubmed doi rcsb
molecule keywords	POLIOVIRUS TYPE 3 (SUBUNIT VP1)
total genus	4
structure length	62
sequence length	68
ec nomenclature	ec 2.7.7.48: RNA-directed RNA polymerase.
pdb deposition date	1995-02-02

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
4	PF02226	Pico_P1A	Picornavirus coat protein (VP4)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
4.10.80.10	Few Secondary Structures	Irregular	Rhinovirus 14, subunit 4	Picornavirus coat protein VP4	1piv400

1NA1D 1EAH4 1RHI4 2RMU4 1RUD4 2RS54 2X5ID 1R084 3JBG4 4RHV4 1Z7S4 1AR64 1PVC4 2R074 1NCQD 1ASJ4 1VBB4 1RUF4 4GB34 1AL24 1R094 1OOPD 1AR74 1VBC4 1RUC4 1RUG4 1MQTD 1RUE4 1H8TD 4Q4V4 4Q4Y4 1RUJ4 1HXS4 4Q4W4 1EV14 1K5MD 1RVF4 1VBE4 3JD74 3J8F4 1POV0 1BEV4 2R044 1VRH4 1RMU4 2RS34 2PLV4 4Q4X4 1PO24 2HWB4 2R064 1PIV4 1RUH4 2RM24 1HRV4 1COV4 1PO14 4PDWD 1AR84 2RS14 1D4M4 1VBA4 1VBD4 2HWC4 2RR14 1RUI4 1HRI4 1AR94
chains in the Genus database with same CATH superfamily

2WDRA 2PYJA 1RUD4 1KF6A 3P4SA 4RHV4 1Z7S4 2R074 1NCQD 1VBB4 3VR8A 2WP9A 1AL24 3AE3A 1NEKA 5C2TA 3AE4A 2H88A 1MQTD 3VR9A 4Q4V4 5C3JA 2WS3A 4Q4W4 3GQHA 1RVF4 2WU2A 3AEGA 3VRBA 3AE2A 4Q4X4 1PO24 4YSZA 2HWB4 4YSYA 2EX3A 1VBD4 2R7FA 4YTMA 1HRI4 1NA1D 1RHI4 1L0VA 1R084 3AEAA 3AEFA 3CIRA 3SFDA 1VBC4 1KFYA 1RUG4 3AECA 1XHXA 1RUJ4 3SUCA 1K5MD 1VBE4 3P4PA 1POV0 1BEV4 2RS34 2PLV4 2ACZA 1ZP0A 3AE5A 3AE9A 1HRV4 1COV4 2WDQA 4PDWD 3ABVA 1VBA4 1XI1A 2RR14 1RUI4 3AE8A 1EAH4 1YQ3A 2RMU4 1NENA 3JBG4 3FI7A 1PVC4 4YTPA 4GB34 1OOPD 1AR74 1RUC4 3P4RA 3AEEA 3SFEA 3VRAA 3AEDA 3P4QA 2WQYA 3JD74 3AE7A 3J8F4 2R044 1XHZA 2R064 1PIV4 4YTNA 1PO14 4YT0A 2H89A 2PW9A 3AE6A 1AR94 1ZOYA 2RS54 2X5ID 4YSXA 3AE1A 2PYLA 1AR64 3GQKA 1ASJ4 2FBWA 1RUF4 4YXDA 4KX6A 1R094 3AEBA 1YQ4A 1RUE4 1H8TD 4Q4Y4 1HXS4 2PZSA 1EV14 2B76A 2WU5A 1VRH4 1RMU4 1RUH4 2RM24 2PY5A 1AR84 2RS14 1D4M4 2HWC4 2WDVA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1NA1 D;  1EAH 4;  1RHI 4;  2RMU 4;  1RUD 4;  2RS5 4;  2X5I D;  1R08 4;  3JBG 4;  4RHV 4;  1Z7S 4;  1AR6 4;  1PVC 4;  2R07 4;  1NCQ D;  1ASJ 4;  1VBB 4;  1RUF 4;  4GB3 4;  1AL2 4;  1R09 4;  1OOP D;  1AR7 4;  1VBC 4;  1RUC 4;  1RUG 4;  1MQT D;  1RUE 4;  1H8T D;  4Q4V 4;  4Q4Y 4;  1RUJ 4;  1HXS 4;  4Q4W 4;  1EV1 4;  1K5M D;  1RVF 4;  1VBE 4;  3JD7 4;  3J8F 4;  1POV 0;  1BEV 4;  2R04 4;  1VRH 4;  1RMU 4;  2RS3 4;  2PLV 4;  4Q4X 4;  1PO2 4;  2HWB 4;  2R06 4;  1PIV 4;  1RUH 4;  2RM2 4;  1HRV 4;  1COV 4;  1PO1 4;  4PDW D;  1AR8 4;  2RS1 4;  1D4M 4;  1VBA 4;  1VBD 4;  2HWC 4;  2RR1 4;  1RUI 4;  1HRI 4;  1AR9 4; 
#chains in the Genus database with same CATH topology
 2WDR A;  2PYJ A;  1RUD 4;  1KF6 A;  3P4S A;  4RHV 4;  1Z7S 4;  2R07 4;  1NCQ D;  1VBB 4;  3VR8 A;  2WP9 A;  1AL2 4;  3AE3 A;  1NEK A;  5C2T A;  3AE4 A;  2H88 A;  1MQT D;  3VR9 A;  4Q4V 4;  5C3J A;  2WS3 A;  4Q4W 4;  3GQH A;  1RVF 4;  2WU2 A;  3AEG A;  3VRB A;  3AE2 A;  4Q4X 4;  1PO2 4;  4YSZ A;  2HWB 4;  4YSY A;  2EX3 A;  1VBD 4;  2R7F A;  4YTM A;  1HRI 4;  1NA1 D;  1RHI 4;  1L0V A;  1R08 4;  3AEA A;  3AEF A;  3CIR A;  3SFD A;  1VBC 4;  1KFY A;  1RUG 4;  3AEC A;  1XHX A;  1RUJ 4;  3SUC A;  1K5M D;  1VBE 4;  3P4P A;  1POV 0;  1BEV 4;  2RS3 4;  2PLV 4;  2ACZ A;  1ZP0 A;  3AE5 A;  3AE9 A;  1HRV 4;  1COV 4;  2WDQ A;  4PDW D;  3ABV A;  1VBA 4;  1XI1 A;  2RR1 4;  1RUI 4;  3AE8 A;  1EAH 4;  1YQ3 A;  2RMU 4;  1NEN A;  3JBG 4;  3FI7 A;  1PVC 4;  4YTP A;  4GB3 4;  1OOP D;  1AR7 4;  1RUC 4;  3P4R A;  3AEE A;  3SFE A;  3VRA A;  3AED A;  3P4Q A;  2WQY A;  3JD7 4;  3AE7 A;  3J8F 4;  2R04 4;  1XHZ A;  2R06 4;  1PIV 4;  4YTN A;  1PO1 4;  4YT0 A;  2H89 A;  2PW9 A;  3AE6 A;  1AR9 4;  1ZOY A;  2RS5 4;  2X5I D;  4YSX A;  3AE1 A;  2PYL A;  1AR6 4;  3GQK A;  1ASJ 4;  2FBW A;  1RUF 4;  4YXD A;  4KX6 A;  1R09 4;  3AEB A;  1YQ4 A;  1RUE 4;  1H8T D;  4Q4Y 4;  1HXS 4;  2PZS A;  1EV1 4;  2B76 A;  2WU5 A;  1VRH 4;  1RMU 4;  1RUH 4;  2RM2 4;  2PY5 A;  1AR8 4;  2RS1 4;  1D4M 4;  2HWC 4;  2WDV A; 
#chains in the Genus database with same CATH homology
 1NA1 D;  1EAH 4;  1RHI 4;  2RMU 4;  1RUD 4;  2RS5 4;  2X5I D;  1R08 4;  3JBG 4;  4RHV 4;  1Z7S 4;  1AR6 4;  1PVC 4;  2R07 4;  1NCQ D;  1ASJ 4;  1VBB 4;  1RUF 4;  4GB3 4;  1AL2 4;  1R09 4;  1OOP D;  1AR7 4;  1VBC 4;  1RUC 4;  1RUG 4;  1MQT D;  1RUE 4;  1H8T D;  4Q4V 4;  4Q4Y 4;  1RUJ 4;  1HXS 4;  4Q4W 4;  1EV1 4;  1K5M D;  1RVF 4;  1VBE 4;  3JD7 4;  3J8F 4;  1POV 0;  1BEV 4;  2R04 4;  1VRH 4;  1RMU 4;  2RS3 4;  2PLV 4;  4Q4X 4;  1PO2 4;  2HWB 4;  2R06 4;  1PIV 4;  1RUH 4;  2RM2 4;  1HRV 4;  1COV 4;  1PO1 4;  4PDW D;  1AR8 4;  2RS1 4;  1D4M 4;  1VBA 4;  1VBD 4;  2HWC 4;  2RR1 4;  1RUI 4;  1HRI 4;  1AR9 4;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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#similar chains, but unknotted
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1PIV4

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations