1R094

Human rhinovirus 14 complexed with antiviral compound r 61837
Total Genus 2

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
2
sequence length
40
structure length
40
Chain Sequence
INYYKDAASTSSAGQSLSMDPSKFTEPVKDLMLKGAPALN

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
3H1 (35-37)EMPTYUpdating...
connected with : NaN
molecule tags Virus
source organism Human rhinovirus 14
publication title Human rhinovirus 14 complexed with antiviral compound R 61837.
pubmed doi rcsb
molecule keywords HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1)
total genus 2
structure length 40
sequence length 40
ec nomenclature ec 2.7.7.48: RNA-directed RNA polymerase.
pdb deposition date 1990-05-04

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
4 PF02226 Pico_P1A Picornavirus coat protein (VP4)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.80.10 Few Secondary Structures Irregular Rhinovirus 14, subunit 4 Picornavirus coat protein VP4 1r09400
1R084 1POV0 1RUD4 1VBB4 1VRH4 2R074 4Q4W4 1RHI4 1NCQD 1VBD4 4PDWD 1RUI4 2R044 2HWB4 4Q4X4 4Q4Y4 2PLV4 1EV14 1HRV4 1COV4 1D4M4 1R094 1VBA4 1PIV4 1H8TD 1AR94 2X5ID 1MQTD 1RUF4 1PO14 2RM24 2RS14 1AR74 1PVC4 1HXS4 1EAH4 1VBE4 1BEV4 1NA1D 1RUH4 1RVF4 1RUJ4 3JBG4 4RHV4 1OOPD 3J8F4 1AR84 1PO24 2RR14 1HRI4 2HWC4 1RMU4 1AR64 2RS34 1RUE4 2RS54 1RUG4 1VBC4 1RUC4 4GB34 1Z7S4 1ASJ4 3JD74 2RMU4 2R064 1K5MD 4Q4V4 1AL24
chains in the Genus database with same CATH superfamily
4Q4W4 4PDWD 4YSZA 1RUI4 2R044 2HWB4 2ACZA 1HRV4 1COV4 1VBA4 1PIV4 1H8TD 2WDQA 1MQTD 1ZP0A 2WDRA 3AE7A 3AEEA 1PO14 2EX3A 1AR74 1RUH4 1RVF4 1RUJ4 1OOPD 3AE4A 3AE1A 4YT0A 3VRAA 1HRI4 1XHXA 4YTMA 1RUE4 3AE5A 1RUG4 1Z7S4 1L0VA 2PY5A 4KX6A 2R064 4Q4V4 3AEDA 2WS3A 1RUD4 1VBD4 4YTNA 2B76A 3VRBA 3VR8A 2H88A 4Q4Y4 2WDVA 2PLV4 3P4RA 1R094 3AECA 1KF6A 1XI1A 3AE3A 1YQ3A 1PVC4 2PZSA 4RHV4 3JBG4 2WP9A 1PO24 3AE6A 2RR14 3FI7A 1ZOYA 1AR64 2WU5A 4YTPA 1VBC4 3P4PA 1RUC4 2WQYA 1ASJ4 3JD74 1KFYA 1R084 1POV0 1VRH4 3AE2A 1RHI4 1NCQD 4Q4X4 3GQKA 1EV14 2PW9A 2H89A 3P4SA 1AR94 3ABVA 3AE9A 2FBWA 2RM24 3CIRA 3AEAA 1VBE4 4YSXA 1NA1D 1YQ4A 3J8F4 3SFDA 2HWC4 1NENA 1RMU4 2RS34 2RS54 1K5MD 5C3JA 1AL24 3SUCA 4YXDA 1VBB4 2R074 3AEBA 3VR9A 2R7FA 1D4M4 2X5ID 1NEKA 4YSYA 1RUF4 2RS14 1HXS4 1EAH4 1BEV4 1AR84 2WU2A 3AE8A 3SFEA 3AEFA 3GQHA 2PYJA 4GB34 2PYLA 3AEGA 5C2TA 2RMU4 1XHZA 3P4QA
chains in the Genus database with same CATH topology
1R084 1POV0 1RUD4 1VBB4 1VRH4 2R074 4Q4W4 1RHI4 1NCQD 1VBD4 4PDWD 1RUI4 2R044 2HWB4 4Q4X4 4Q4Y4 2PLV4 1EV14 1HRV4 1COV4 1D4M4 1R094 1VBA4 1PIV4 1H8TD 1AR94 2X5ID 1MQTD 1RUF4 1PO14 2RM24 2RS14 1AR74 1PVC4 1HXS4 1EAH4 1VBE4 1BEV4 1NA1D 1RUH4 1RVF4 1RUJ4 3JBG4 4RHV4 1OOPD 3J8F4 1AR84 1PO24 2RR14 1HRI4 2HWC4 1RMU4 1AR64 2RS34 1RUE4 2RS54 1RUG4 1VBC4 1RUC4 4GB34 1Z7S4 1ASJ4 3JD74 2RMU4 2R064 1K5MD 4Q4V4 1AL24
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1R08 4;  1POV 0;  1RUD 4;  1VBB 4;  1VRH 4;  2R07 4;  4Q4W 4;  1RHI 4;  1NCQ D;  1VBD 4;  4PDW D;  1RUI 4;  2R04 4;  2HWB 4;  4Q4X 4;  4Q4Y 4;  2PLV 4;  1EV1 4;  1HRV 4;  1COV 4;  1D4M 4;  1R09 4;  1VBA 4;  1PIV 4;  1H8T D;  1AR9 4;  2X5I D;  1MQT D;  1RUF 4;  1PO1 4;  2RM2 4;  2RS1 4;  1AR7 4;  1PVC 4;  1HXS 4;  1EAH 4;  1VBE 4;  1BEV 4;  1NA1 D;  1RUH 4;  1RVF 4;  1RUJ 4;  3JBG 4;  4RHV 4;  1OOP D;  3J8F 4;  1AR8 4;  1PO2 4;  2RR1 4;  1HRI 4;  2HWC 4;  1RMU 4;  1AR6 4;  2RS3 4;  1RUE 4;  2RS5 4;  1RUG 4;  1VBC 4;  1RUC 4;  4GB3 4;  1Z7S 4;  1ASJ 4;  3JD7 4;  2RMU 4;  2R06 4;  1K5M D;  4Q4V 4;  1AL2 4; 
#chains in the Genus database with same CATH topology
 4Q4W 4;  4PDW D;  4YSZ A;  1RUI 4;  2R04 4;  2HWB 4;  2ACZ A;  1HRV 4;  1COV 4;  1VBA 4;  1PIV 4;  1H8T D;  2WDQ A;  1MQT D;  1ZP0 A;  2WDR A;  3AE7 A;  3AEE A;  1PO1 4;  2EX3 A;  1AR7 4;  1RUH 4;  1RVF 4;  1RUJ 4;  1OOP D;  3AE4 A;  3AE1 A;  4YT0 A;  3VRA A;  1HRI 4;  1XHX A;  4YTM A;  1RUE 4;  3AE5 A;  1RUG 4;  1Z7S 4;  1L0V A;  2PY5 A;  4KX6 A;  2R06 4;  4Q4V 4;  3AED A;  2WS3 A;  1RUD 4;  1VBD 4;  4YTN A;  2B76 A;  3VRB A;  3VR8 A;  2H88 A;  4Q4Y 4;  2WDV A;  2PLV 4;  3P4R A;  1R09 4;  3AEC A;  1KF6 A;  1XI1 A;  3AE3 A;  1YQ3 A;  1PVC 4;  2PZS A;  4RHV 4;  3JBG 4;  2WP9 A;  1PO2 4;  3AE6 A;  2RR1 4;  3FI7 A;  1ZOY A;  1AR6 4;  2WU5 A;  4YTP A;  1VBC 4;  3P4P A;  1RUC 4;  2WQY A;  1ASJ 4;  3JD7 4;  1KFY A;  1R08 4;  1POV 0;  1VRH 4;  3AE2 A;  1RHI 4;  1NCQ D;  4Q4X 4;  3GQK A;  1EV1 4;  2PW9 A;  2H89 A;  3P4S A;  1AR9 4;  3ABV A;  3AE9 A;  2FBW A;  2RM2 4;  3CIR A;  3AEA A;  1VBE 4;  4YSX A;  1NA1 D;  1YQ4 A;  3J8F 4;  3SFD A;  2HWC 4;  1NEN A;  1RMU 4;  2RS3 4;  2RS5 4;  1K5M D;  5C3J A;  1AL2 4;  3SUC A;  4YXD A;  1VBB 4;  2R07 4;  3AEB A;  3VR9 A;  2R7F A;  1D4M 4;  2X5I D;  1NEK A;  4YSY A;  1RUF 4;  2RS1 4;  1HXS 4;  1EAH 4;  1BEV 4;  1AR8 4;  2WU2 A;  3AE8 A;  3SFE A;  3AEF A;  3GQH A;  2PYJ A;  4GB3 4;  2PYL A;  3AEG A;  5C2T A;  2RMU 4;  1XHZ A;  3P4Q A; 
#chains in the Genus database with same CATH homology
 1R08 4;  1POV 0;  1RUD 4;  1VBB 4;  1VRH 4;  2R07 4;  4Q4W 4;  1RHI 4;  1NCQ D;  1VBD 4;  4PDW D;  1RUI 4;  2R04 4;  2HWB 4;  4Q4X 4;  4Q4Y 4;  2PLV 4;  1EV1 4;  1HRV 4;  1COV 4;  1D4M 4;  1R09 4;  1VBA 4;  1PIV 4;  1H8T D;  1AR9 4;  2X5I D;  1MQT D;  1RUF 4;  1PO1 4;  2RM2 4;  2RS1 4;  1AR7 4;  1PVC 4;  1HXS 4;  1EAH 4;  1VBE 4;  1BEV 4;  1NA1 D;  1RUH 4;  1RVF 4;  1RUJ 4;  3JBG 4;  4RHV 4;  1OOP D;  3J8F 4;  1AR8 4;  1PO2 4;  2RR1 4;  1HRI 4;  2HWC 4;  1RMU 4;  1AR6 4;  2RS3 4;  1RUE 4;  2RS5 4;  1RUG 4;  1VBC 4;  1RUC 4;  4GB3 4;  1Z7S 4;  1ASJ 4;  3JD7 4;  2RMU 4;  2R06 4;  1K5M D;  4Q4V 4;  1AL2 4; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...

Application loaded.