1RHI | Genus

Total Genus 2

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	2
sequence length	43
structure length	43
Chain Sequence	YTVINYYKDAASSSSAGQSFSMDPSKFTEPVKDLMLKGAPALN

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Virus
publication title	Human rhinovirus 3 at 3.0 A resolution. pubmed doi rcsb
molecule keywords	HUMAN RHINOVIRUS 3 COAT PROTEIN
total genus	2
structure length	43
sequence length	43
ec nomenclature	ec 2.7.7.48: RNA-directed RNA polymerase.
pdb deposition date	1996-06-17

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
4	PF02226	Pico_P1A	Picornavirus coat protein (VP4)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
4.10.80.10	Few Secondary Structures	Irregular	Rhinovirus 14, subunit 4	Picornavirus coat protein VP4	1rhi400

1MQTD 1AR84 1EV14 1H8TD 1POV0 2RS14 1NA1D 1PO24 1PO14 1RUG4 1HXS4 1RUH4 1AR74 4Q4V4 1RUE4 1RUF4 1VBE4 1VBC4 4PDWD 1PIV4 2PLV4 1RVF4 2HWB4 1RHI4 4Q4W4 1RUC4 1R094 2R074 4Q4Y4 1AR94 2RR14 2RMU4 1R084 2R044 2RS54 1OOPD 2HWC4 1PVC4 1VBA4 1BEV4 4Q4X4 2RS34 1HRV4 1VBD4 1AR64 1EAH4 1K5MD 3JBG4 1COV4 2RM24 1RMU4 2X5ID 4RHV4 1RUD4 1VRH4 2R064 3J8F4 1ASJ4 1VBB4 3JD74 1RUI4 1Z7S4 1D4M4 1HRI4 1AL24 1NCQD 4GB34 1RUJ4
chains in the Genus database with same CATH superfamily

1KF6A 3SFDA 3AEGA 3AE6A 4Q4V4 3AE1A 1VBE4 1PIV4 1ZOYA 2HWB4 1RHI4 3FI7A 2H89A 3VR9A 4YSZA 2RS54 2PW9A 1VBA4 1NENA 1BEV4 3P4PA 3SUCA 1COV4 3CIRA 2WU5A 2X5ID 2WDRA 4YSXA 1D4M4 1NCQD 2RM24 1KFYA 1XHXA 1EV14 1H8TD 4KX6A 1NA1D 1PO24 1PO14 1AR74 1YQ3A 1VBC4 2PLV4 1NEKA 1R094 2R074 1AR94 3VR8A 2RR14 2B76A 4YTPA 1OOPD 3AECA 2R7FA 3AE7A 5C2TA 2WDQA 3P4RA 3AE5A 2WS3A 3AEFA 1VRH4 3SFEA 1RUI4 4YXDA 3P4SA 2FBWA 1AR84 3VRBA 3AEDA 1POV0 2RS14 1XHZA 1RUG4 1HXS4 2ACZA 3AE2A 1RUE4 4PDWD 3ABVA 2PY5A 4Q4W4 1RUC4 3AE8A 1L0VA 2EX3A 2H88A 2PYLA 3AE3A 2HWC4 3P4QA 1PVC4 3AEAA 2RS34 1VBD4 1AR64 1EAH4 1RMU4 4RHV4 1RUD4 3J8F4 1VBB4 2PYJA 2WU2A 3VRAA 4GB34 1Z7S4 1HRI4 1RUJ4 1MQTD 3GQHA 3AEBA 1XI1A 1RUH4 2WP9A 1RUF4 1RVF4 4YSYA 4Q4Y4 4YT0A 3AE4A 2RMU4 1R084 2R044 5C3JA 1ZP0A 1YQ4A 3AE9A 4Q4X4 2PZSA 1HRV4 1K5MD 3JBG4 4YTNA 2R064 3GQKA 1ASJ4 3JD74 2WQYA 4YTMA 1AL24 2WDVA 3AEEA
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1MQT D;  1AR8 4;  1EV1 4;  1H8T D;  1POV 0;  2RS1 4;  1NA1 D;  1PO2 4;  1PO1 4;  1RUG 4;  1HXS 4;  1RUH 4;  1AR7 4;  4Q4V 4;  1RUE 4;  1RUF 4;  1VBE 4;  1VBC 4;  4PDW D;  1PIV 4;  2PLV 4;  1RVF 4;  2HWB 4;  1RHI 4;  4Q4W 4;  1RUC 4;  1R09 4;  2R07 4;  4Q4Y 4;  1AR9 4;  2RR1 4;  2RMU 4;  1R08 4;  2R04 4;  2RS5 4;  1OOP D;  2HWC 4;  1PVC 4;  1VBA 4;  1BEV 4;  4Q4X 4;  2RS3 4;  1HRV 4;  1VBD 4;  1AR6 4;  1EAH 4;  1K5M D;  3JBG 4;  1COV 4;  2RM2 4;  1RMU 4;  2X5I D;  4RHV 4;  1RUD 4;  1VRH 4;  2R06 4;  3J8F 4;  1ASJ 4;  1VBB 4;  3JD7 4;  1RUI 4;  1Z7S 4;  1D4M 4;  1HRI 4;  1AL2 4;  1NCQ D;  4GB3 4;  1RUJ 4; 
#chains in the Genus database with same CATH topology
 1KF6 A;  3SFD A;  3AEG A;  3AE6 A;  4Q4V 4;  3AE1 A;  1VBE 4;  1PIV 4;  1ZOY A;  2HWB 4;  1RHI 4;  3FI7 A;  2H89 A;  3VR9 A;  4YSZ A;  2RS5 4;  2PW9 A;  1VBA 4;  1NEN A;  1BEV 4;  3P4P A;  3SUC A;  1COV 4;  3CIR A;  2WU5 A;  2X5I D;  2WDR A;  4YSX A;  1D4M 4;  1NCQ D;  2RM2 4;  1KFY A;  1XHX A;  1EV1 4;  1H8T D;  4KX6 A;  1NA1 D;  1PO2 4;  1PO1 4;  1AR7 4;  1YQ3 A;  1VBC 4;  2PLV 4;  1NEK A;  1R09 4;  2R07 4;  1AR9 4;  3VR8 A;  2RR1 4;  2B76 A;  4YTP A;  1OOP D;  3AEC A;  2R7F A;  3AE7 A;  5C2T A;  2WDQ A;  3P4R A;  3AE5 A;  2WS3 A;  3AEF A;  1VRH 4;  3SFE A;  1RUI 4;  4YXD A;  3P4S A;  2FBW A;  1AR8 4;  3VRB A;  3AED A;  1POV 0;  2RS1 4;  1XHZ A;  1RUG 4;  1HXS 4;  2ACZ A;  3AE2 A;  1RUE 4;  4PDW D;  3ABV A;  2PY5 A;  4Q4W 4;  1RUC 4;  3AE8 A;  1L0V A;  2EX3 A;  2H88 A;  2PYL A;  3AE3 A;  2HWC 4;  3P4Q A;  1PVC 4;  3AEA A;  2RS3 4;  1VBD 4;  1AR6 4;  1EAH 4;  1RMU 4;  4RHV 4;  1RUD 4;  3J8F 4;  1VBB 4;  2PYJ A;  2WU2 A;  3VRA A;  4GB3 4;  1Z7S 4;  1HRI 4;  1RUJ 4;  1MQT D;  3GQH A;  3AEB A;  1XI1 A;  1RUH 4;  2WP9 A;  1RUF 4;  1RVF 4;  4YSY A;  4Q4Y 4;  4YT0 A;  3AE4 A;  2RMU 4;  1R08 4;  2R04 4;  5C3J A;  1ZP0 A;  1YQ4 A;  3AE9 A;  4Q4X 4;  2PZS A;  1HRV 4;  1K5M D;  3JBG 4;  4YTN A;  2R06 4;  3GQK A;  1ASJ 4;  3JD7 4;  2WQY A;  4YTM A;  1AL2 4;  2WDV A;  3AEE A; 
#chains in the Genus database with same CATH homology
 1MQT D;  1AR8 4;  1EV1 4;  1H8T D;  1POV 0;  2RS1 4;  1NA1 D;  1PO2 4;  1PO1 4;  1RUG 4;  1HXS 4;  1RUH 4;  1AR7 4;  4Q4V 4;  1RUE 4;  1RUF 4;  1VBE 4;  1VBC 4;  4PDW D;  1PIV 4;  2PLV 4;  1RVF 4;  2HWB 4;  1RHI 4;  4Q4W 4;  1RUC 4;  1R09 4;  2R07 4;  4Q4Y 4;  1AR9 4;  2RR1 4;  2RMU 4;  1R08 4;  2R04 4;  2RS5 4;  1OOP D;  2HWC 4;  1PVC 4;  1VBA 4;  1BEV 4;  4Q4X 4;  2RS3 4;  1HRV 4;  1VBD 4;  1AR6 4;  1EAH 4;  1K5M D;  3JBG 4;  1COV 4;  2RM2 4;  1RMU 4;  2X5I D;  4RHV 4;  1RUD 4;  1VRH 4;  2R06 4;  3J8F 4;  1ASJ 4;  1VBB 4;  3JD7 4;  1RUI 4;  1Z7S 4;  1D4M 4;  1HRI 4;  1AL2 4;  1NCQ D;  4GB3 4;  1RUJ 4;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1RHI4

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations