1RUC4

Rhinovirus 14 mutant n1105s complexed with antiviral compound win 52035
Total Genus 2

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
2
sequence length
40
structure length
40
Chain Sequence
INYYKDAASTSSAGQSLSMDPSKFTEPVKDLMLKGAPALN

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
3H1 (35-37)EMPTYUpdating...
connected with : NaN
molecule tags Virus
source organism Human rhinovirus 14
publication title Structural studies on human rhinovirus 14 drug-resistant compensation mutants.
pubmed doi rcsb
molecule keywords RHINOVIRUS 14
total genus 2
structure length 40
sequence length 40
ec nomenclature ec 2.7.7.48: RNA-directed RNA polymerase.
pdb deposition date 1995-06-09

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
4 PF02226 Pico_P1A Picornavirus coat protein (VP4)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.80.10 Few Secondary Structures Irregular Rhinovirus 14, subunit 4 Picornavirus coat protein VP4 1ruc400
1HXS4 1COV4 1RUH4 1RHI4 4RHV4 1HRV4 1K5MD 1RUE4 1PO14 1AR84 1VBC4 1PO24 1RUC4 1RUF4 3JBG4 1VBE4 2RMU4 2RS34 1POV0 4Q4Y4 1ASJ4 1RUG4 1RUJ4 1BEV4 2R064 2R074 2RR14 1NA1D 4Q4W4 1AL24 1RUD4 1EAH4 4PDWD 3JD74 2PLV4 1AR64 1PIV4 2HWC4 1OOPD 2HWB4 4Q4V4 1VBB4 1R084 1RVF4 2RM24 1VRH4 4GB34 1MQTD 1H8TD 1RMU4 2R044 2RS54 1HRI4 1AR94 2RS14 1EV14 1RUI4 1R094 1Z7S4 4Q4X4 1VBA4 3J8F4 1AR74 1D4M4 1NCQD 1PVC4 1VBD4 2X5ID
chains in the Genus database with same CATH superfamily
2PY5A 1RUH4 2WQYA 1XHXA 1K5MD 1RUE4 3AE7A 1PO14 3ABVA 1RUF4 2H89A 3AE6A 3VR9A 1RUJ4 1BEV4 4Q4W4 3GQKA 4PDWD 2PLV4 1AR64 3AE1A 3AE2A 1VBB4 2WDQA 2PYLA 3AE5A 1YQ3A 2R044 4Q4X4 1ZOYA 1R094 1D4M4 2WDVA 2WDRA 2X5ID 2WU2A 4YSYA 1RUC4 4YSZA 2PW9A 2ACZA 2RS34 4YSXA 3P4PA 4YT0A 1XI1A 3AEEA 1RUD4 1EAH4 2B76A 1KFYA 2R7FA 1R084 3AE8A 2RM24 1VRH4 4YTMA 1YQ4A 4YXDA 2WP9A 1RUI4 1VBA4 3AE9A 1VBD4 1HXS4 1RHI4 1HRV4 1AR84 1KF6A 1VBC4 3AEBA 1VBE4 3SFDA 2RMU4 3AE4A 4Q4Y4 3AEAA 2RR14 1NA1D 1AL24 3JD74 1PIV4 2WU5A 2HWC4 1OOPD 4Q4V4 4GB34 1L0VA 1MQTD 1H8TD 3AE3A 3AEFA 1HRI4 1NEKA 1EV14 3SUCA 3J8F4 2EX3A 3FI7A 5C3JA 3AEDA 1COV4 4RHV4 3VR8A 1NENA 3P4SA 3VRAA 1PO24 1XHZA 3JBG4 3GQHA 1POV0 4YTPA 1ASJ4 1RUG4 2WS3A 2R064 2R074 3P4QA 3AEGA 2PYJA 5C2TA 2PZSA 1ZP0A 2HWB4 4YTNA 3AECA 3P4RA 1RVF4 3VRBA 1RMU4 3SFEA 2RS54 2RS14 1AR94 2FBWA 1Z7S4 2H88A 1AR74 4KX6A 1NCQD 1PVC4 3CIRA
chains in the Genus database with same CATH topology
1HXS4 1COV4 1RUH4 1RHI4 4RHV4 1HRV4 1K5MD 1RUE4 1PO14 1AR84 1VBC4 1PO24 1RUC4 1RUF4 3JBG4 1VBE4 2RMU4 2RS34 1POV0 4Q4Y4 1ASJ4 1RUG4 1RUJ4 1BEV4 2R064 2R074 2RR14 1NA1D 4Q4W4 1AL24 1RUD4 1EAH4 4PDWD 3JD74 2PLV4 1AR64 1PIV4 2HWC4 1OOPD 2HWB4 4Q4V4 1VBB4 1R084 1RVF4 2RM24 1VRH4 4GB34 1MQTD 1H8TD 1RMU4 2R044 2RS54 1HRI4 1AR94 2RS14 1EV14 1RUI4 1R094 1Z7S4 4Q4X4 1VBA4 3J8F4 1AR74 1D4M4 1NCQD 1PVC4 1VBD4 2X5ID
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1HXS 4;  1COV 4;  1RUH 4;  1RHI 4;  4RHV 4;  1HRV 4;  1K5M D;  1RUE 4;  1PO1 4;  1AR8 4;  1VBC 4;  1PO2 4;  1RUC 4;  1RUF 4;  3JBG 4;  1VBE 4;  2RMU 4;  2RS3 4;  1POV 0;  4Q4Y 4;  1ASJ 4;  1RUG 4;  1RUJ 4;  1BEV 4;  2R06 4;  2R07 4;  2RR1 4;  1NA1 D;  4Q4W 4;  1AL2 4;  1RUD 4;  1EAH 4;  4PDW D;  3JD7 4;  2PLV 4;  1AR6 4;  1PIV 4;  2HWC 4;  1OOP D;  2HWB 4;  4Q4V 4;  1VBB 4;  1R08 4;  1RVF 4;  2RM2 4;  1VRH 4;  4GB3 4;  1MQT D;  1H8T D;  1RMU 4;  2R04 4;  2RS5 4;  1HRI 4;  1AR9 4;  2RS1 4;  1EV1 4;  1RUI 4;  1R09 4;  1Z7S 4;  4Q4X 4;  1VBA 4;  3J8F 4;  1AR7 4;  1D4M 4;  1NCQ D;  1PVC 4;  1VBD 4;  2X5I D; 
#chains in the Genus database with same CATH topology
 2PY5 A;  1RUH 4;  2WQY A;  1XHX A;  1K5M D;  1RUE 4;  3AE7 A;  1PO1 4;  3ABV A;  1RUF 4;  2H89 A;  3AE6 A;  3VR9 A;  1RUJ 4;  1BEV 4;  4Q4W 4;  3GQK A;  4PDW D;  2PLV 4;  1AR6 4;  3AE1 A;  3AE2 A;  1VBB 4;  2WDQ A;  2PYL A;  3AE5 A;  1YQ3 A;  2R04 4;  4Q4X 4;  1ZOY A;  1R09 4;  1D4M 4;  2WDV A;  2WDR A;  2X5I D;  2WU2 A;  4YSY A;  1RUC 4;  4YSZ A;  2PW9 A;  2ACZ A;  2RS3 4;  4YSX A;  3P4P A;  4YT0 A;  1XI1 A;  3AEE A;  1RUD 4;  1EAH 4;  2B76 A;  1KFY A;  2R7F A;  1R08 4;  3AE8 A;  2RM2 4;  1VRH 4;  4YTM A;  1YQ4 A;  4YXD A;  2WP9 A;  1RUI 4;  1VBA 4;  3AE9 A;  1VBD 4;  1HXS 4;  1RHI 4;  1HRV 4;  1AR8 4;  1KF6 A;  1VBC 4;  3AEB A;  1VBE 4;  3SFD A;  2RMU 4;  3AE4 A;  4Q4Y 4;  3AEA A;  2RR1 4;  1NA1 D;  1AL2 4;  3JD7 4;  1PIV 4;  2WU5 A;  2HWC 4;  1OOP D;  4Q4V 4;  4GB3 4;  1L0V A;  1MQT D;  1H8T D;  3AE3 A;  3AEF A;  1HRI 4;  1NEK A;  1EV1 4;  3SUC A;  3J8F 4;  2EX3 A;  3FI7 A;  5C3J A;  3AED A;  1COV 4;  4RHV 4;  3VR8 A;  1NEN A;  3P4S A;  3VRA A;  1PO2 4;  1XHZ A;  3JBG 4;  3GQH A;  1POV 0;  4YTP A;  1ASJ 4;  1RUG 4;  2WS3 A;  2R06 4;  2R07 4;  3P4Q A;  3AEG A;  2PYJ A;  5C2T A;  2PZS A;  1ZP0 A;  2HWB 4;  4YTN A;  3AEC A;  3P4R A;  1RVF 4;  3VRB A;  1RMU 4;  3SFE A;  2RS5 4;  2RS1 4;  1AR9 4;  2FBW A;  1Z7S 4;  2H88 A;  1AR7 4;  4KX6 A;  1NCQ D;  1PVC 4;  3CIR A; 
#chains in the Genus database with same CATH homology
 1HXS 4;  1COV 4;  1RUH 4;  1RHI 4;  4RHV 4;  1HRV 4;  1K5M D;  1RUE 4;  1PO1 4;  1AR8 4;  1VBC 4;  1PO2 4;  1RUC 4;  1RUF 4;  3JBG 4;  1VBE 4;  2RMU 4;  2RS3 4;  1POV 0;  4Q4Y 4;  1ASJ 4;  1RUG 4;  1RUJ 4;  1BEV 4;  2R06 4;  2R07 4;  2RR1 4;  1NA1 D;  4Q4W 4;  1AL2 4;  1RUD 4;  1EAH 4;  4PDW D;  3JD7 4;  2PLV 4;  1AR6 4;  1PIV 4;  2HWC 4;  1OOP D;  2HWB 4;  4Q4V 4;  1VBB 4;  1R08 4;  1RVF 4;  2RM2 4;  1VRH 4;  4GB3 4;  1MQT D;  1H8T D;  1RMU 4;  2R04 4;  2RS5 4;  1HRI 4;  1AR9 4;  2RS1 4;  1EV1 4;  1RUI 4;  1R09 4;  1Z7S 4;  4Q4X 4;  1VBA 4;  3J8F 4;  1AR7 4;  1D4M 4;  1NCQ D;  1PVC 4;  1VBD 4;  2X5I D; 
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similar chains in the pdb database (?% sequence similarity)

 
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