1RUF | Genus

Total Genus 2

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	2
sequence length	40
structure length	40
Chain Sequence	INYYKDAASTSSAGQSLSMDPSKFTEPVKDLMLKGAPALN

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Virus
source organism	Human rhinovirus 14
publication title	Structural studies on human rhinovirus 14 drug-resistant compensation mutants. pubmed doi rcsb
molecule keywords	RHINOVIRUS 14
total genus	2
structure length	40
sequence length	40
ec nomenclature	ec 2.7.7.48: RNA-directed RNA polymerase.
pdb deposition date	1995-06-09

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
4	PF02226	Pico_P1A	Picornavirus coat protein (VP4)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
4.10.80.10	Few Secondary Structures	Irregular	Rhinovirus 14, subunit 4	Picornavirus coat protein VP4	1ruf400

1RUI4 1VBE4 1RUC4 2RS34 4Q4W4 1AL24 1RVF4 1D4M4 1HRI4 1NCQD 1POV0 1R094 1VRH4 2R044 4PDWD 1HXS4 4GB34 1H8TD 1RMU4 1AR74 2RR14 2PLV4 3JD74 1MQTD 2RS54 2HWB4 4Q4V4 1R084 1RUD4 1HRV4 1EV14 1VBA4 1EAH4 1VBC4 2HWC4 1K5MD 1VBB4 3JBG4 1AR84 1ASJ4 1Z7S4 2R074 4Q4Y4 1RUH4 1BEV4 1RUG4 1RUF4 1AR94 1RUE4 1COV4 1OOPD 2RS14 2RM24 3J8F4 1RUJ4 1PO14 1PIV4 1VBD4 4Q4X4 2X5ID 2R064 1NA1D 1AR64 4RHV4 1PVC4 1PO24 2RMU4 1RHI4
chains in the Genus database with same CATH superfamily

3P4QA 1RUC4 3AEEA 1D4M4 1NCQD 1R094 1POV0 1KFYA 3ABVA 3CIRA 2WU5A 1RMU4 2RR14 2HWB4 1EV14 1EAH4 3P4SA 3AE7A 1ASJ4 1ZP0A 1Z7S4 2R074 3SUCA 1RUH4 5C3JA 2PZSA 1RUG4 4YTNA 2WQYA 3AEBA 2WDVA 3GQHA 3J8F4 4Q4X4 3AEFA 1NA1D 1AR64 4Q4Y4 1ZOYA 3VR9A 2RS34 3AE4A 4PDWD 1VRH4 2R044 1AR74 1XI1A 3P4RA 1VBA4 1AR84 1NENA 1XHZA 2PYLA 2R7FA 3P4PA 1COV4 4YXDA 2WDQA 3AEGA 3AE6A 1PIV4 2X5ID 4RHV4 3VR8A 3SFEA 2RMU4 3AE8A 1RHI4 2WDRA 1VBE4 4YT0A 1RVF4 2H88A 2H89A 1H8TD 2FBWA 2PLV4 3JD74 4YSZA 1MQTD 1KF6A 2RS54 3AEAA 4Q4V4 1R084 1RUD4 3AE9A 3AE1A 1VBB4 3JBG4 3AE5A 4YTPA 4KX6A 2PY5A 1RUF4 1L0VA 2PW9A 1AR94 1RUE4 3AE2A 2PYJA 1OOPD 2RS14 1RUJ4 1VBD4 2R064 1PO24 2EX3A 1RUI4 3GQKA 1AL24 2B76A 4Q4W4 3FI7A 3VRBA 1HRI4 1YQ3A 1HRV4 1HXS4 4GB34 1NEKA 4YTMA 2ACZA 3SFDA 2WS3A 1VBC4 2HWC4 1K5MD 4YSYA 1XHXA 1YQ4A 3AECA 4YSXA 1BEV4 5C2TA 3VRAA 2RM24 3AE3A 1PO14 2WP9A 1PVC4 3AEDA 2WU2A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1RUI 4;  1VBE 4;  1RUC 4;  2RS3 4;  4Q4W 4;  1AL2 4;  1RVF 4;  1D4M 4;  1HRI 4;  1NCQ D;  1POV 0;  1R09 4;  1VRH 4;  2R04 4;  4PDW D;  1HXS 4;  4GB3 4;  1H8T D;  1RMU 4;  1AR7 4;  2RR1 4;  2PLV 4;  3JD7 4;  1MQT D;  2RS5 4;  2HWB 4;  4Q4V 4;  1R08 4;  1RUD 4;  1HRV 4;  1EV1 4;  1VBA 4;  1EAH 4;  1VBC 4;  2HWC 4;  1K5M D;  1VBB 4;  3JBG 4;  1AR8 4;  1ASJ 4;  1Z7S 4;  2R07 4;  4Q4Y 4;  1RUH 4;  1BEV 4;  1RUG 4;  1RUF 4;  1AR9 4;  1RUE 4;  1COV 4;  1OOP D;  2RS1 4;  2RM2 4;  3J8F 4;  1RUJ 4;  1PO1 4;  1PIV 4;  1VBD 4;  4Q4X 4;  2X5I D;  2R06 4;  1NA1 D;  1AR6 4;  4RHV 4;  1PVC 4;  1PO2 4;  2RMU 4;  1RHI 4; 
#chains in the Genus database with same CATH topology
 3P4Q A;  1RUC 4;  3AEE A;  1D4M 4;  1NCQ D;  1R09 4;  1POV 0;  1KFY A;  3ABV A;  3CIR A;  2WU5 A;  1RMU 4;  2RR1 4;  2HWB 4;  1EV1 4;  1EAH 4;  3P4S A;  3AE7 A;  1ASJ 4;  1ZP0 A;  1Z7S 4;  2R07 4;  3SUC A;  1RUH 4;  5C3J A;  2PZS A;  1RUG 4;  4YTN A;  2WQY A;  3AEB A;  2WDV A;  3GQH A;  3J8F 4;  4Q4X 4;  3AEF A;  1NA1 D;  1AR6 4;  4Q4Y 4;  1ZOY A;  3VR9 A;  2RS3 4;  3AE4 A;  4PDW D;  1VRH 4;  2R04 4;  1AR7 4;  1XI1 A;  3P4R A;  1VBA 4;  1AR8 4;  1NEN A;  1XHZ A;  2PYL A;  2R7F A;  3P4P A;  1COV 4;  4YXD A;  2WDQ A;  3AEG A;  3AE6 A;  1PIV 4;  2X5I D;  4RHV 4;  3VR8 A;  3SFE A;  2RMU 4;  3AE8 A;  1RHI 4;  2WDR A;  1VBE 4;  4YT0 A;  1RVF 4;  2H88 A;  2H89 A;  1H8T D;  2FBW A;  2PLV 4;  3JD7 4;  4YSZ A;  1MQT D;  1KF6 A;  2RS5 4;  3AEA A;  4Q4V 4;  1R08 4;  1RUD 4;  3AE9 A;  3AE1 A;  1VBB 4;  3JBG 4;  3AE5 A;  4YTP A;  4KX6 A;  2PY5 A;  1RUF 4;  1L0V A;  2PW9 A;  1AR9 4;  1RUE 4;  3AE2 A;  2PYJ A;  1OOP D;  2RS1 4;  1RUJ 4;  1VBD 4;  2R06 4;  1PO2 4;  2EX3 A;  1RUI 4;  3GQK A;  1AL2 4;  2B76 A;  4Q4W 4;  3FI7 A;  3VRB A;  1HRI 4;  1YQ3 A;  1HRV 4;  1HXS 4;  4GB3 4;  1NEK A;  4YTM A;  2ACZ A;  3SFD A;  2WS3 A;  1VBC 4;  2HWC 4;  1K5M D;  4YSY A;  1XHX A;  1YQ4 A;  3AEC A;  4YSX A;  1BEV 4;  5C2T A;  3VRA A;  2RM2 4;  3AE3 A;  1PO1 4;  2WP9 A;  1PVC 4;  3AED A;  2WU2 A; 
#chains in the Genus database with same CATH homology
 1RUI 4;  1VBE 4;  1RUC 4;  2RS3 4;  4Q4W 4;  1AL2 4;  1RVF 4;  1D4M 4;  1HRI 4;  1NCQ D;  1POV 0;  1R09 4;  1VRH 4;  2R04 4;  4PDW D;  1HXS 4;  4GB3 4;  1H8T D;  1RMU 4;  1AR7 4;  2RR1 4;  2PLV 4;  3JD7 4;  1MQT D;  2RS5 4;  2HWB 4;  4Q4V 4;  1R08 4;  1RUD 4;  1HRV 4;  1EV1 4;  1VBA 4;  1EAH 4;  1VBC 4;  2HWC 4;  1K5M D;  1VBB 4;  3JBG 4;  1AR8 4;  1ASJ 4;  1Z7S 4;  2R07 4;  4Q4Y 4;  1RUH 4;  1BEV 4;  1RUG 4;  1RUF 4;  1AR9 4;  1RUE 4;  1COV 4;  1OOP D;  2RS1 4;  2RM2 4;  3J8F 4;  1RUJ 4;  1PO1 4;  1PIV 4;  1VBD 4;  4Q4X 4;  2X5I D;  2R06 4;  1NA1 D;  1AR6 4;  4RHV 4;  1PVC 4;  1PO2 4;  2RMU 4;  1RHI 4;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1RUF4

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations