1RUH | Genus

Total Genus 2

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	2
sequence length	40
structure length	40
Chain Sequence	INYYKDAASTSSAGQSLSMDPSKFTEPVKDLMLKGAPALN

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Virus
source organism	Human rhinovirus 14
publication title	Structural studies on human rhinovirus 14 drug-resistant compensation mutants. pubmed doi rcsb
molecule keywords	RHINOVIRUS 14
total genus	2
structure length	40
sequence length	40
ec nomenclature	ec 2.7.7.48: RNA-directed RNA polymerase.
pdb deposition date	1995-06-09

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
4	PF02226	Pico_P1A	Picornavirus coat protein (VP4)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
4.10.80.10	Few Secondary Structures	Irregular	Rhinovirus 14, subunit 4	Picornavirus coat protein VP4	1ruh400

3JD74 1EV14 4GB34 2RS54 1PIV4 2RM24 1RMU4 1VBC4 1NCQD 4PDWD 1D4M4 4Q4X4 1RUJ4 1RUD4 1AR84 3JBG4 1K5MD 1HRI4 1MQTD 2HWB4 1HRV4 1COV4 1EAH4 1VRH4 2RS34 4Q4Y4 2RR14 1PO24 3J8F4 1RVF4 1VBD4 1AR94 2R074 1RUH4 1POV0 1PVC4 1AR64 1R094 1AL24 4RHV4 4Q4W4 1RUG4 1HXS4 1VBB4 1OOPD 2RS14 4Q4V4 1RHI4 2PLV4 2RMU4 1ASJ4 1H8TD 1RUI4 1NA1D 1PO14 1RUF4 1VBE4 1Z7S4 2HWC4 1RUE4 1VBA4 1AR74 1RUC4 2R064 2R044 1R084 1BEV4 2X5ID
chains in the Genus database with same CATH superfamily

4GB34 2FBWA 1RMU4 1VBC4 1D4M4 2PYLA 4YTNA 2B76A 1HRV4 3VR8A 1YQ3A 4YXDA 1XI1A 2WU2A 2WQYA 3J8F4 3VR9A 3AEEA 2R074 3AEDA 1PVC4 1NENA 3SFDA 1AR64 1R094 2WP9A 4YTPA 1RUG4 3AE9A 3AEGA 3P4QA 1Z7S4 1RUF4 1KF6A 2PY5A 2R064 2X5ID 3SUCA 2WDRA 3P4SA 3AEFA 5C3JA 1NCQD 4Q4X4 2WS3A 1MQTD 4YSYA 1VRH4 4KX6A 1PO24 4YT0A 1AR94 3P4RA 3GQHA 4YTMA 4Q4W4 1ZOYA 1VBB4 1NEKA 4Q4V4 1XHXA 1ASJ4 1H8TD 1RUI4 3AE6A 2HWC4 3GQKA 3SFEA 3AE1A 2R044 3JD74 1EV14 2RS54 2RM24 1RUJ4 1RUD4 3AEBA 1AR84 2ACZA 3JBG4 4YSZA 1K5MD 1HRI4 2WDQA 3AEAA 4Q4Y4 3P4PA 2RR14 1L0VA 1XHZA 1RUH4 1YQ4A 3AE8A 2H89A 1AL24 3AE7A 3FI7A 1HXS4 1OOPD 4YSXA 2PLV4 1VBE4 1PO14 2H88A 3AECA 1RUE4 1VBA4 3ABVA 3VRBA 1R084 3CIRA 2R7FA 2PZSA 2WDVA 1PIV4 2WU5A 4PDWD 3AE4A 2HWB4 1COV4 1EAH4 2EX3A 2RS34 5C2TA 3VRAA 1KFYA 1RVF4 1VBD4 1POV0 3AE2A 2PYJA 4RHV4 2RS14 1RHI4 2RMU4 1NA1D 3AE3A 2PW9A 1AR74 1RUC4 1ZP0A 3AE5A 1BEV4
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3JD7 4;  1EV1 4;  4GB3 4;  2RS5 4;  1PIV 4;  2RM2 4;  1RMU 4;  1VBC 4;  1NCQ D;  4PDW D;  1D4M 4;  4Q4X 4;  1RUJ 4;  1RUD 4;  1AR8 4;  3JBG 4;  1K5M D;  1HRI 4;  1MQT D;  2HWB 4;  1HRV 4;  1COV 4;  1EAH 4;  1VRH 4;  2RS3 4;  4Q4Y 4;  2RR1 4;  1PO2 4;  3J8F 4;  1RVF 4;  1VBD 4;  1AR9 4;  2R07 4;  1RUH 4;  1POV 0;  1PVC 4;  1AR6 4;  1R09 4;  1AL2 4;  4RHV 4;  4Q4W 4;  1RUG 4;  1HXS 4;  1VBB 4;  1OOP D;  2RS1 4;  4Q4V 4;  1RHI 4;  2PLV 4;  2RMU 4;  1ASJ 4;  1H8T D;  1RUI 4;  1NA1 D;  1PO1 4;  1RUF 4;  1VBE 4;  1Z7S 4;  2HWC 4;  1RUE 4;  1VBA 4;  1AR7 4;  1RUC 4;  2R06 4;  2R04 4;  1R08 4;  1BEV 4;  2X5I D; 
#chains in the Genus database with same CATH topology
 4GB3 4;  2FBW A;  1RMU 4;  1VBC 4;  1D4M 4;  2PYL A;  4YTN A;  2B76 A;  1HRV 4;  3VR8 A;  1YQ3 A;  4YXD A;  1XI1 A;  2WU2 A;  2WQY A;  3J8F 4;  3VR9 A;  3AEE A;  2R07 4;  3AED A;  1PVC 4;  1NEN A;  3SFD A;  1AR6 4;  1R09 4;  2WP9 A;  4YTP A;  1RUG 4;  3AE9 A;  3AEG A;  3P4Q A;  1Z7S 4;  1RUF 4;  1KF6 A;  2PY5 A;  2R06 4;  2X5I D;  3SUC A;  2WDR A;  3P4S A;  3AEF A;  5C3J A;  1NCQ D;  4Q4X 4;  2WS3 A;  1MQT D;  4YSY A;  1VRH 4;  4KX6 A;  1PO2 4;  4YT0 A;  1AR9 4;  3P4R A;  3GQH A;  4YTM A;  4Q4W 4;  1ZOY A;  1VBB 4;  1NEK A;  4Q4V 4;  1XHX A;  1ASJ 4;  1H8T D;  1RUI 4;  3AE6 A;  2HWC 4;  3GQK A;  3SFE A;  3AE1 A;  2R04 4;  3JD7 4;  1EV1 4;  2RS5 4;  2RM2 4;  1RUJ 4;  1RUD 4;  3AEB A;  1AR8 4;  2ACZ A;  3JBG 4;  4YSZ A;  1K5M D;  1HRI 4;  2WDQ A;  3AEA A;  4Q4Y 4;  3P4P A;  2RR1 4;  1L0V A;  1XHZ A;  1RUH 4;  1YQ4 A;  3AE8 A;  2H89 A;  1AL2 4;  3AE7 A;  3FI7 A;  1HXS 4;  1OOP D;  4YSX A;  2PLV 4;  1VBE 4;  1PO1 4;  2H88 A;  3AEC A;  1RUE 4;  1VBA 4;  3ABV A;  3VRB A;  1R08 4;  3CIR A;  2R7F A;  2PZS A;  2WDV A;  1PIV 4;  2WU5 A;  4PDW D;  3AE4 A;  2HWB 4;  1COV 4;  1EAH 4;  2EX3 A;  2RS3 4;  5C2T A;  3VRA A;  1KFY A;  1RVF 4;  1VBD 4;  1POV 0;  3AE2 A;  2PYJ A;  4RHV 4;  2RS1 4;  1RHI 4;  2RMU 4;  1NA1 D;  3AE3 A;  2PW9 A;  1AR7 4;  1RUC 4;  1ZP0 A;  3AE5 A;  1BEV 4; 
#chains in the Genus database with same CATH homology
 3JD7 4;  1EV1 4;  4GB3 4;  2RS5 4;  1PIV 4;  2RM2 4;  1RMU 4;  1VBC 4;  1NCQ D;  4PDW D;  1D4M 4;  4Q4X 4;  1RUJ 4;  1RUD 4;  1AR8 4;  3JBG 4;  1K5M D;  1HRI 4;  1MQT D;  2HWB 4;  1HRV 4;  1COV 4;  1EAH 4;  1VRH 4;  2RS3 4;  4Q4Y 4;  2RR1 4;  1PO2 4;  3J8F 4;  1RVF 4;  1VBD 4;  1AR9 4;  2R07 4;  1RUH 4;  1POV 0;  1PVC 4;  1AR6 4;  1R09 4;  1AL2 4;  4RHV 4;  4Q4W 4;  1RUG 4;  1HXS 4;  1VBB 4;  1OOP D;  2RS1 4;  4Q4V 4;  1RHI 4;  2PLV 4;  2RMU 4;  1ASJ 4;  1H8T D;  1RUI 4;  1NA1 D;  1PO1 4;  1RUF 4;  1VBE 4;  1Z7S 4;  2HWC 4;  1RUE 4;  1VBA 4;  1AR7 4;  1RUC 4;  2R06 4;  2R04 4;  1R08 4;  1BEV 4;  2X5I D;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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1RUH4

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations