1VBC4

Poliovirus (type 3, sabin strain) (p3/sabin, p3/leon/12a(1)b) complexed with r77975
Total Genus 3
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
3
sequence length
68
structure length
62
Chain Sequence
GAQVSSQKVGAHENSSTINYTTINYYKDSASNAASKQDYSQDPSKFTEPLKDVLIKTAPALN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structures of poliovirus complexes with anti-viral drugs: implications for viral stability and drug design.
pubmed doi rcsb
molecule tags Virus
molecule keywords POLIOVIRUS TYPE 3
total genus 3
structure length 62
sequence length 68
ec nomenclature ec 2.7.7.48: RNA-directed RNA polymerase.
pdb deposition date 1996-01-02

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
4 PF02226 Pico_P1A Picornavirus coat protein (VP4)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.80.10 Few Secondary Structures Irregular Rhinovirus 14, subunit 4 Picornavirus coat protein VP4 1vbc400
1RUJ4 1HRI4 1HXS4 1AL24 1EV14 2RS54 3JD74 1RUF4 4Q4W4 1EAH4 1PO14 1H8TD 1RUI4 4PDWD 1COV4 3J8F4 4Q4Y4 1RUD4 2R064 1VBB4 2R044 1RMU4 1VBC4 1R084 1Z7S4 2R074 3JBG4 4Q4V4 4RHV4 2RS34 1ASJ4 1OOPD 2RM24 2X5ID 1HRV4 1AR94 1AR64 1NCQD 4Q4X4 1MQTD 1NA1D 2RR14 1BEV4 1VBD4 1RUE4 1RHI4 1VRH4 1POV0 2HWB4 1K5MD 1AR74 1RVF4 2HWC4 1VBE4 4GB34 1VBA4 1RUG4 1PO24 1PVC4 1RUH4 1D4M4 1RUC4 2RMU4 2PLV4 1AR84 2RS14 1PIV4 1R094
chains in the Genus database with same CATH superfamily
2WU2A 1ZP0A 1HXS4 3VRAA 1EAH4 1COV4 1VBB4 4YSYA 1RMU4 1R084 2R074 2WDVA 4YTMA 3AEBA 2R7FA 3P4QA 1NA1D 1XHXA 2RR14 3P4SA 2HWC4 4GB34 1VBA4 2ACZA 3SFEA 1RUG4 2WQYA 3SUCA 2RS54 2RS14 3AEAA 4YTNA 3AEDA 1YQ4A 1RUI4 3J8F4 3FI7A 1YQ3A 2R064 3AEEA 1VBC4 3JBG4 4RHV4 4Q4V4 3GQHA 4YXDA 2PYJA 3ABVA 1NCQD 4Q4X4 1BEV4 4YSXA 2PYLA 1RUE4 1RHI4 1K5MD 2PW9A 2WS3A 1RVF4 1PVC4 1Z7S4 1AR84 3P4RA 5C3JA 1HRI4 3AEGA 2WDRA 4YTPA 3JD74 2PY5A 3AE2A 3P4PA 3AE8A 1PO14 1RUD4 3GQKA 3AE7A 1ASJ4 3AE1A 3VR8A 2H89A 1OOPD 2RM24 2X5ID 3VRBA 1AR94 1XHZA 1KFYA 2FBWA 1VRH4 1POV0 2HWB4 1AR74 2PZSA 1PO24 3AE5A 1RUC4 3AE4A 4YSZA 4KX6A 1PIV4 1L0VA 1R094 1RUJ4 1NENA 1EV14 3AEFA 4YT0A 1RUF4 4Q4W4 1H8TD 2EX3A 4PDWD 4Q4Y4 3AE6A 2R044 1KF6A 1NEKA 3CIRA 2RS34 5C2TA 1HRV4 1ZOYA 2B76A 2WU5A 1AR64 2WP9A 2H88A 3VR9A 1MQTD 3AECA 1VBD4 3AE3A 2WDQA 3AE9A 1VBE4 3SFDA 1RUH4 1D4M4 2RMU4 2PLV4 1AL24 1XI1A
chains in the Genus database with same CATH topology
1RUJ4 1HRI4 1HXS4 1AL24 1EV14 2RS54 3JD74 1RUF4 4Q4W4 1EAH4 1PO14 1H8TD 1RUI4 4PDWD 1COV4 3J8F4 4Q4Y4 1RUD4 2R064 1VBB4 2R044 1RMU4 1VBC4 1R084 1Z7S4 2R074 3JBG4 4Q4V4 4RHV4 2RS34 1ASJ4 1OOPD 2RM24 2X5ID 1HRV4 1AR94 1AR64 1NCQD 4Q4X4 1MQTD 1NA1D 2RR14 1BEV4 1VBD4 1RUE4 1RHI4 1VRH4 1POV0 2HWB4 1K5MD 1AR74 1RVF4 2HWC4 1VBE4 4GB34 1VBA4 1RUG4 1PO24 1PVC4 1RUH4 1D4M4 1RUC4 2RMU4 2PLV4 1AR84 2RS14 1PIV4 1R094
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1RUJ 4;  1HRI 4;  1HXS 4;  1AL2 4;  1EV1 4;  2RS5 4;  3JD7 4;  1RUF 4;  4Q4W 4;  1EAH 4;  1PO1 4;  1H8T D;  1RUI 4;  4PDW D;  1COV 4;  3J8F 4;  4Q4Y 4;  1RUD 4;  2R06 4;  1VBB 4;  2R04 4;  1RMU 4;  1VBC 4;  1R08 4;  1Z7S 4;  2R07 4;  3JBG 4;  4Q4V 4;  4RHV 4;  2RS3 4;  1ASJ 4;  1OOP D;  2RM2 4;  2X5I D;  1HRV 4;  1AR9 4;  1AR6 4;  1NCQ D;  4Q4X 4;  1MQT D;  1NA1 D;  2RR1 4;  1BEV 4;  1VBD 4;  1RUE 4;  1RHI 4;  1VRH 4;  1POV 0;  2HWB 4;  1K5M D;  1AR7 4;  1RVF 4;  2HWC 4;  1VBE 4;  4GB3 4;  1VBA 4;  1RUG 4;  1PO2 4;  1PVC 4;  1RUH 4;  1D4M 4;  1RUC 4;  2RMU 4;  2PLV 4;  1AR8 4;  2RS1 4;  1PIV 4;  1R09 4; 
#chains in the Genus database with same CATH topology
 2WU2 A;  1ZP0 A;  1HXS 4;  3VRA A;  1EAH 4;  1COV 4;  1VBB 4;  4YSY A;  1RMU 4;  1R08 4;  2R07 4;  2WDV A;  4YTM A;  3AEB A;  2R7F A;  3P4Q A;  1NA1 D;  1XHX A;  2RR1 4;  3P4S A;  2HWC 4;  4GB3 4;  1VBA 4;  2ACZ A;  3SFE A;  1RUG 4;  2WQY A;  3SUC A;  2RS5 4;  2RS1 4;  3AEA A;  4YTN A;  3AED A;  1YQ4 A;  1RUI 4;  3J8F 4;  3FI7 A;  1YQ3 A;  2R06 4;  3AEE A;  1VBC 4;  3JBG 4;  4RHV 4;  4Q4V 4;  3GQH A;  4YXD A;  2PYJ A;  3ABV A;  1NCQ D;  4Q4X 4;  1BEV 4;  4YSX A;  2PYL A;  1RUE 4;  1RHI 4;  1K5M D;  2PW9 A;  2WS3 A;  1RVF 4;  1PVC 4;  1Z7S 4;  1AR8 4;  3P4R A;  5C3J A;  1HRI 4;  3AEG A;  2WDR A;  4YTP A;  3JD7 4;  2PY5 A;  3AE2 A;  3P4P A;  3AE8 A;  1PO1 4;  1RUD 4;  3GQK A;  3AE7 A;  1ASJ 4;  3AE1 A;  3VR8 A;  2H89 A;  1OOP D;  2RM2 4;  2X5I D;  3VRB A;  1AR9 4;  1XHZ A;  1KFY A;  2FBW A;  1VRH 4;  1POV 0;  2HWB 4;  1AR7 4;  2PZS A;  1PO2 4;  3AE5 A;  1RUC 4;  3AE4 A;  4YSZ A;  4KX6 A;  1PIV 4;  1L0V A;  1R09 4;  1RUJ 4;  1NEN A;  1EV1 4;  3AEF A;  4YT0 A;  1RUF 4;  4Q4W 4;  1H8T D;  2EX3 A;  4PDW D;  4Q4Y 4;  3AE6 A;  2R04 4;  1KF6 A;  1NEK A;  3CIR A;  2RS3 4;  5C2T A;  1HRV 4;  1ZOY A;  2B76 A;  2WU5 A;  1AR6 4;  2WP9 A;  2H88 A;  3VR9 A;  1MQT D;  3AEC A;  1VBD 4;  3AE3 A;  2WDQ A;  3AE9 A;  1VBE 4;  3SFD A;  1RUH 4;  1D4M 4;  2RMU 4;  2PLV 4;  1AL2 4;  1XI1 A; 
#chains in the Genus database with same CATH homology
 1RUJ 4;  1HRI 4;  1HXS 4;  1AL2 4;  1EV1 4;  2RS5 4;  3JD7 4;  1RUF 4;  4Q4W 4;  1EAH 4;  1PO1 4;  1H8T D;  1RUI 4;  4PDW D;  1COV 4;  3J8F 4;  4Q4Y 4;  1RUD 4;  2R06 4;  1VBB 4;  2R04 4;  1RMU 4;  1VBC 4;  1R08 4;  1Z7S 4;  2R07 4;  3JBG 4;  4Q4V 4;  4RHV 4;  2RS3 4;  1ASJ 4;  1OOP D;  2RM2 4;  2X5I D;  1HRV 4;  1AR9 4;  1AR6 4;  1NCQ D;  4Q4X 4;  1MQT D;  1NA1 D;  2RR1 4;  1BEV 4;  1VBD 4;  1RUE 4;  1RHI 4;  1VRH 4;  1POV 0;  2HWB 4;  1K5M D;  1AR7 4;  1RVF 4;  2HWC 4;  1VBE 4;  4GB3 4;  1VBA 4;  1RUG 4;  1PO2 4;  1PVC 4;  1RUH 4;  1D4M 4;  1RUC 4;  2RMU 4;  2PLV 4;  1AR8 4;  2RS1 4;  1PIV 4;  1R09 4; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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