1VBE | Genus

Total Genus 5

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	5
sequence length	68
structure length	62
Chain Sequence	GAQVSSQKVGAHENSSTINYTTINYYKDSASNAASKQDYSQDPSKFTEPLKDVLIKTAPALN

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Virus
publication title	Structures of poliovirus complexes with anti-viral drugs: implications for viral stability and drug design. pubmed doi rcsb
molecule keywords	POLIOVIRUS TYPE 3
total genus	5
structure length	62
sequence length	68
ec nomenclature	ec 2.7.7.48: RNA-directed RNA polymerase.
pdb deposition date	1996-01-02

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
4	PF02226	Pico_P1A	Picornavirus coat protein (VP4)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
4.10.80.10	Few Secondary Structures	Irregular	Rhinovirus 14, subunit 4	Picornavirus coat protein VP4	1vbe400

1RUE4 4Q4W4 1AR74 1RUC4 1RVF4 1HRI4 2RR14 1RUI4 1EAH4 1RUF4 1AR84 1VBD4 2HWB4 4GB34 1R084 1RHI4 1MQTD 1PIV4 1NA1D 2R044 4Q4V4 1AL24 1COV4 1NCQD 4PDWD 2PLV4 1H8TD 1RUJ4 1PVC4 1VBA4 2X5ID 1VRH4 2R064 1EV14 2RS34 1AR94 1OOPD 4Q4X4 1D4M4 1PO14 1ASJ4 1RMU4 1VBB4 2RS54 2RM24 1PO24 1BEV4 4RHV4 1HXS4 3JBG4 1K5MD 2RS14 3J8F4 2HWC4 1HRV4 2RMU4 1VBE4 1POV0 4Q4Y4 1RUD4 1R094 1RUG4 1VBC4 1RUH4 1Z7S4 2R074 3JD74 1AR64
chains in the Genus database with same CATH superfamily

1RUE4 2WP9A 4Q4W4 1HRI4 1EAH4 4GB34 2WDQA 3AE2A 1YQ3A 1AR64 1PIV4 2PZSA 4Q4V4 1COV4 3AE5A 1H8TD 1NEKA 3VR8A 3P4PA 4YSYA 1ZP0A 4YTPA 1D4M4 3AE7A 1L0VA 3VRBA 2RM24 3AE6A 4YSZA 3P4QA 2PYLA 4Q4Y4 1VBE4 3FI7A 3AEDA 1VBC4 1RUG4 4YTNA 2H88A 2WU2A 1AR74 1RVF4 1AR84 1VBD4 3CIRA 4PDWD 2PLV4 1RUJ4 1EV14 2RS34 1ASJ4 1VBB4 3AEBA 3JBG4 2RS14 3P4SA 2WU5A 2HWC4 5C2TA 3AEGA 2RMU4 2WS3A 3P4RA 1ZOYA 3SFDA 1RUH4 1Z7S4 2R074 2EX3A 4RHV4 1KF6A 3JD74 1XI1A 3VRAA 3AEFA 1RUI4 2WDVA 2PW9A 3VR9A 1AL24 1NCQD 2B76A 1KFYA 1XHXA 3AECA 1VBA4 2X5ID 3ABVA 3AE8A 2H89A 3AE3A 1YQ4A 1AR94 1OOPD 1RMU4 3GQKA 3AEAA 2WQYA 1PO24 1BEV4 1HXS4 1HRV4 2FBWA 3AE9A 1RUC4 2WDRA 2RR14 1NENA 1RUF4 2HWB4 3GQHA 1R084 1RHI4 1MQTD 4KX6A 1NA1D 2R044 1XHZA 2ACZA 1PVC4 2PYJA 5C3JA 1VRH4 2R7FA 4Q4X4 4YT0A 1PO14 3SFEA 2RS54 4YSXA 1K5MD 3J8F4 4YXDA 3AE4A 1POV0 4YTMA 1RUD4 1R094 3AE1A 3SUCA 2PY5A 3AEEA 2R064
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1RUE 4;  4Q4W 4;  1AR7 4;  1RUC 4;  1RVF 4;  1HRI 4;  2RR1 4;  1RUI 4;  1EAH 4;  1RUF 4;  1AR8 4;  1VBD 4;  2HWB 4;  4GB3 4;  1R08 4;  1RHI 4;  1MQT D;  1PIV 4;  1NA1 D;  2R04 4;  4Q4V 4;  1AL2 4;  1COV 4;  1NCQ D;  4PDW D;  2PLV 4;  1H8T D;  1RUJ 4;  1PVC 4;  1VBA 4;  2X5I D;  1VRH 4;  2R06 4;  1EV1 4;  2RS3 4;  1AR9 4;  1OOP D;  4Q4X 4;  1D4M 4;  1PO1 4;  1ASJ 4;  1RMU 4;  1VBB 4;  2RS5 4;  2RM2 4;  1PO2 4;  1BEV 4;  4RHV 4;  1HXS 4;  3JBG 4;  1K5M D;  2RS1 4;  3J8F 4;  2HWC 4;  1HRV 4;  2RMU 4;  1VBE 4;  1POV 0;  4Q4Y 4;  1RUD 4;  1R09 4;  1RUG 4;  1VBC 4;  1RUH 4;  1Z7S 4;  2R07 4;  3JD7 4;  1AR6 4; 
#chains in the Genus database with same CATH topology
 1RUE 4;  2WP9 A;  4Q4W 4;  1HRI 4;  1EAH 4;  4GB3 4;  2WDQ A;  3AE2 A;  1YQ3 A;  1AR6 4;  1PIV 4;  2PZS A;  4Q4V 4;  1COV 4;  3AE5 A;  1H8T D;  1NEK A;  3VR8 A;  3P4P A;  4YSY A;  1ZP0 A;  4YTP A;  1D4M 4;  3AE7 A;  1L0V A;  3VRB A;  2RM2 4;  3AE6 A;  4YSZ A;  3P4Q A;  2PYL A;  4Q4Y 4;  1VBE 4;  3FI7 A;  3AED A;  1VBC 4;  1RUG 4;  4YTN A;  2H88 A;  2WU2 A;  1AR7 4;  1RVF 4;  1AR8 4;  1VBD 4;  3CIR A;  4PDW D;  2PLV 4;  1RUJ 4;  1EV1 4;  2RS3 4;  1ASJ 4;  1VBB 4;  3AEB A;  3JBG 4;  2RS1 4;  3P4S A;  2WU5 A;  2HWC 4;  5C2T A;  3AEG A;  2RMU 4;  2WS3 A;  3P4R A;  1ZOY A;  3SFD A;  1RUH 4;  1Z7S 4;  2R07 4;  2EX3 A;  4RHV 4;  1KF6 A;  3JD7 4;  1XI1 A;  3VRA A;  3AEF A;  1RUI 4;  2WDV A;  2PW9 A;  3VR9 A;  1AL2 4;  1NCQ D;  2B76 A;  1KFY A;  1XHX A;  3AEC A;  1VBA 4;  2X5I D;  3ABV A;  3AE8 A;  2H89 A;  3AE3 A;  1YQ4 A;  1AR9 4;  1OOP D;  1RMU 4;  3GQK A;  3AEA A;  2WQY A;  1PO2 4;  1BEV 4;  1HXS 4;  1HRV 4;  2FBW A;  3AE9 A;  1RUC 4;  2WDR A;  2RR1 4;  1NEN A;  1RUF 4;  2HWB 4;  3GQH A;  1R08 4;  1RHI 4;  1MQT D;  4KX6 A;  1NA1 D;  2R04 4;  1XHZ A;  2ACZ A;  1PVC 4;  2PYJ A;  5C3J A;  1VRH 4;  2R7F A;  4Q4X 4;  4YT0 A;  1PO1 4;  3SFE A;  2RS5 4;  4YSX A;  1K5M D;  3J8F 4;  4YXD A;  3AE4 A;  1POV 0;  4YTM A;  1RUD 4;  1R09 4;  3AE1 A;  3SUC A;  2PY5 A;  3AEE A;  2R06 4; 
#chains in the Genus database with same CATH homology
 1RUE 4;  4Q4W 4;  1AR7 4;  1RUC 4;  1RVF 4;  1HRI 4;  2RR1 4;  1RUI 4;  1EAH 4;  1RUF 4;  1AR8 4;  1VBD 4;  2HWB 4;  4GB3 4;  1R08 4;  1RHI 4;  1MQT D;  1PIV 4;  1NA1 D;  2R04 4;  4Q4V 4;  1AL2 4;  1COV 4;  1NCQ D;  4PDW D;  2PLV 4;  1H8T D;  1RUJ 4;  1PVC 4;  1VBA 4;  2X5I D;  1VRH 4;  2R06 4;  1EV1 4;  2RS3 4;  1AR9 4;  1OOP D;  4Q4X 4;  1D4M 4;  1PO1 4;  1ASJ 4;  1RMU 4;  1VBB 4;  2RS5 4;  2RM2 4;  1PO2 4;  1BEV 4;  4RHV 4;  1HXS 4;  3JBG 4;  1K5M D;  2RS1 4;  3J8F 4;  2HWC 4;  1HRV 4;  2RMU 4;  1VBE 4;  1POV 0;  4Q4Y 4;  1RUD 4;  1R09 4;  1RUG 4;  1VBC 4;  1RUH 4;  1Z7S 4;  2R07 4;  3JD7 4;  1AR6 4;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

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#similar chains, but unknotted
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1VBE4

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations