1VRH4

Hrv14/sdz 880-061 complex
Total Genus 2
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
2
sequence length
40
structure length
40
Chain Sequence
INYYKDAASTSSAGQSLSMDPSKFTEPVKDLMLKGAPALN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
molecule tags Virus
source organism Human rhinovirus 14
publication title Synthesis and activity of piperazine-containing antirhinoviral agents and crystal structure of SDZ 880-061 bound to human rhinovirus 14.
pubmed doi rcsb
molecule keywords RHINOVIRUS 14
total genus 2
structure length 40
sequence length 40
ec nomenclature ec 2.7.7.48: RNA-directed RNA polymerase.
pdb deposition date 1996-02-26

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
4 PF02226 Pico_P1A Picornavirus coat protein (VP4)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.80.10 Few Secondary Structures Irregular Rhinovirus 14, subunit 4 Picornavirus coat protein VP4 1vrh400
3JD74 2RS14 1ASJ4 2R044 4Q4V4 1HRI4 1RUG4 1RUF4 1VBC4 4Q4X4 1OOPD 1NA1D 2RM24 1R084 1R094 2R064 2R074 4Q4W4 2RR14 1VBB4 1RUI4 2HWC4 1VRH4 1HRV4 1AR74 1AR94 1VBE4 1H8TD 1HXS4 1RUH4 2RMU4 2X5ID 3JBG4 1PO14 1RUJ4 1RMU4 1RUD4 1PO24 1RUC4 1PIV4 1Z7S4 1AR64 2HWB4 1VBA4 4GB34 2RS34 2RS54 2PLV4 4Q4Y4 1RUE4 1K5MD 1AR84 1COV4 1D4M4 1POV0 3J8F4 1AL24 4PDWD 1MQTD 1VBD4 4RHV4 1NCQD 1EAH4 1RHI4 1RVF4 1BEV4 1PVC4 1EV14
chains in the Genus database with same CATH superfamily
3JD74 4Q4V4 1RUF4 4Q4X4 5C3JA 1OOPD 2RM24 1ZOYA 1R094 1RVF4 3P4RA 1XI1A 1VBB4 1KF6A 1RUI4 2PYJA 3AE6A 3P4QA 1AR74 3VRBA 1AR94 1YQ4A 1RUH4 2RMU4 2WU2A 2X5ID 3AEEA 1NENA 2WU5A 2H88A 2ACZA 4YSXA 3SFEA 2WDRA 1COV4 1RUD4 4YTPA 1RHI4 2PYLA 4YSZA 1ASJ4 2FBWA 1VBC4 3GQHA 1NA1D 5C2TA 2RR14 2HWC4 3AEAA 2WDVA 3AE1A 3AE7A 2H89A 3JBG4 4YTNA 1RMU4 3SUCA 3AEGA 3VR9A 2WDQA 3AEDA 1VBA4 4GB34 4Q4Y4 3AEBA 1AR84 1D4M4 1POV0 1AL24 1VBD4 1NCQD 3AEFA 3J8F4 2RS14 2B76A 2R044 1XHXA 1RUG4 1R084 1YQ3A 3FI7A 4KX6A 1XHZA 2PZSA 1VRH4 3AECA 3AE5A 1VBE4 3AE8A 1HXS4 3VR8A 3AE9A 2WP9A 1RUJ4 1KFYA 3AE2A 2PW9A 1RUC4 3AE4A 2R7FA 3VRAA 2RS54 4YTMA 2PLV4 1K5MD 4RHV4 3P4PA 4YT0A 1L0VA 1PO24 1BEV4 3P4SA 3SFDA 1HRI4 1NEKA 2R074 4Q4W4 3CIRA 1ZP0A 1HRV4 3ABVA 2WS3A 1H8TD 1PO14 4YSYA 3GQKA 1PIV4 1Z7S4 1AR64 2HWB4 2RS34 3AE3A 1RUE4 2WQYA 2PY5A 4YXDA 4PDWD 2EX3A 1MQTD 1EAH4 2R064 1PVC4 1EV14
chains in the Genus database with same CATH topology
3JD74 2RS14 1ASJ4 2R044 4Q4V4 1HRI4 1RUG4 1RUF4 1VBC4 4Q4X4 1OOPD 1NA1D 2RM24 1R084 1R094 2R064 2R074 4Q4W4 2RR14 1VBB4 1RUI4 2HWC4 1VRH4 1HRV4 1AR74 1AR94 1VBE4 1H8TD 1HXS4 1RUH4 2RMU4 2X5ID 3JBG4 1PO14 1RUJ4 1RMU4 1RUD4 1PO24 1RUC4 1PIV4 1Z7S4 1AR64 2HWB4 1VBA4 4GB34 2RS34 2RS54 2PLV4 4Q4Y4 1RUE4 1K5MD 1AR84 1COV4 1D4M4 1POV0 3J8F4 1AL24 4PDWD 1MQTD 1VBD4 4RHV4 1NCQD 1EAH4 1RHI4 1RVF4 1BEV4 1PVC4 1EV14
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3JD7 4;  2RS1 4;  1ASJ 4;  2R04 4;  4Q4V 4;  1HRI 4;  1RUG 4;  1RUF 4;  1VBC 4;  4Q4X 4;  1OOP D;  1NA1 D;  2RM2 4;  1R08 4;  1R09 4;  2R06 4;  2R07 4;  4Q4W 4;  2RR1 4;  1VBB 4;  1RUI 4;  2HWC 4;  1VRH 4;  1HRV 4;  1AR7 4;  1AR9 4;  1VBE 4;  1H8T D;  1HXS 4;  1RUH 4;  2RMU 4;  2X5I D;  3JBG 4;  1PO1 4;  1RUJ 4;  1RMU 4;  1RUD 4;  1PO2 4;  1RUC 4;  1PIV 4;  1Z7S 4;  1AR6 4;  2HWB 4;  1VBA 4;  4GB3 4;  2RS3 4;  2RS5 4;  2PLV 4;  4Q4Y 4;  1RUE 4;  1K5M D;  1AR8 4;  1COV 4;  1D4M 4;  1POV 0;  3J8F 4;  1AL2 4;  4PDW D;  1MQT D;  1VBD 4;  4RHV 4;  1NCQ D;  1EAH 4;  1RHI 4;  1RVF 4;  1BEV 4;  1PVC 4;  1EV1 4; 
#chains in the Genus database with same CATH topology
 3JD7 4;  4Q4V 4;  1RUF 4;  4Q4X 4;  5C3J A;  1OOP D;  2RM2 4;  1ZOY A;  1R09 4;  1RVF 4;  3P4R A;  1XI1 A;  1VBB 4;  1KF6 A;  1RUI 4;  2PYJ A;  3AE6 A;  3P4Q A;  1AR7 4;  3VRB A;  1AR9 4;  1YQ4 A;  1RUH 4;  2RMU 4;  2WU2 A;  2X5I D;  3AEE A;  1NEN A;  2WU5 A;  2H88 A;  2ACZ A;  4YSX A;  3SFE A;  2WDR A;  1COV 4;  1RUD 4;  4YTP A;  1RHI 4;  2PYL A;  4YSZ A;  1ASJ 4;  2FBW A;  1VBC 4;  3GQH A;  1NA1 D;  5C2T A;  2RR1 4;  2HWC 4;  3AEA A;  2WDV A;  3AE1 A;  3AE7 A;  2H89 A;  3JBG 4;  4YTN A;  1RMU 4;  3SUC A;  3AEG A;  3VR9 A;  2WDQ A;  3AED A;  1VBA 4;  4GB3 4;  4Q4Y 4;  3AEB A;  1AR8 4;  1D4M 4;  1POV 0;  1AL2 4;  1VBD 4;  1NCQ D;  3AEF A;  3J8F 4;  2RS1 4;  2B76 A;  2R04 4;  1XHX A;  1RUG 4;  1R08 4;  1YQ3 A;  3FI7 A;  4KX6 A;  1XHZ A;  2PZS A;  1VRH 4;  3AEC A;  3AE5 A;  1VBE 4;  3AE8 A;  1HXS 4;  3VR8 A;  3AE9 A;  2WP9 A;  1RUJ 4;  1KFY A;  3AE2 A;  2PW9 A;  1RUC 4;  3AE4 A;  2R7F A;  3VRA A;  2RS5 4;  4YTM A;  2PLV 4;  1K5M D;  4RHV 4;  3P4P A;  4YT0 A;  1L0V A;  1PO2 4;  1BEV 4;  3P4S A;  3SFD A;  1HRI 4;  1NEK A;  2R07 4;  4Q4W 4;  3CIR A;  1ZP0 A;  1HRV 4;  3ABV A;  2WS3 A;  1H8T D;  1PO1 4;  4YSY A;  3GQK A;  1PIV 4;  1Z7S 4;  1AR6 4;  2HWB 4;  2RS3 4;  3AE3 A;  1RUE 4;  2WQY A;  2PY5 A;  4YXD A;  4PDW D;  2EX3 A;  1MQT D;  1EAH 4;  2R06 4;  1PVC 4;  1EV1 4; 
#chains in the Genus database with same CATH homology
 3JD7 4;  2RS1 4;  1ASJ 4;  2R04 4;  4Q4V 4;  1HRI 4;  1RUG 4;  1RUF 4;  1VBC 4;  4Q4X 4;  1OOP D;  1NA1 D;  2RM2 4;  1R08 4;  1R09 4;  2R06 4;  2R07 4;  4Q4W 4;  2RR1 4;  1VBB 4;  1RUI 4;  2HWC 4;  1VRH 4;  1HRV 4;  1AR7 4;  1AR9 4;  1VBE 4;  1H8T D;  1HXS 4;  1RUH 4;  2RMU 4;  2X5I D;  3JBG 4;  1PO1 4;  1RUJ 4;  1RMU 4;  1RUD 4;  1PO2 4;  1RUC 4;  1PIV 4;  1Z7S 4;  1AR6 4;  2HWB 4;  1VBA 4;  4GB3 4;  2RS3 4;  2RS5 4;  2PLV 4;  4Q4Y 4;  1RUE 4;  1K5M D;  1AR8 4;  1COV 4;  1D4M 4;  1POV 0;  3J8F 4;  1AL2 4;  4PDW D;  1MQT D;  1VBD 4;  4RHV 4;  1NCQ D;  1EAH 4;  1RHI 4;  1RVF 4;  1BEV 4;  1PVC 4;  1EV1 4; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...