1Z7S | Genus

Total Genus 4

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	4
sequence length	68
structure length	68
Chain Sequence	GAQVSTQKTGAHENQNVAANGSTINYTTINYYKDSASNSATRQDLSQDPSKFTEPVKDLMLKTAPALN

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Virus
publication title	The crystal structure of coxsackievirus a21 and its interaction with icam-1. pubmed doi rcsb
molecule keywords	Human COXSACKIEVIRUS A21
total genus	4
structure length	68
sequence length	68
ec nomenclature	ec 2.7.7.48: RNA-directed RNA polymerase.
pdb deposition date	2005-03-28

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
4	PF02226	Pico_P1A	Picornavirus coat protein (VP4)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
4.10.80.10	Few Secondary Structures	Irregular	Rhinovirus 14, subunit 4	Picornavirus coat protein VP4	1z7s400

1COV4 2R044 4GB34 4Q4W4 1H8TD 1R084 2RM24 1AR74 1PO14 1ASJ4 2R064 2HWC4 1NCQD 1PIV4 1MQTD 1AR64 1PO24 1VRH4 2RS34 1BEV4 1VBC4 2RS14 1RUE4 1RUI4 1VBE4 1AL24 1RUJ4 1VBD4 1RUF4 3J8F4 1NA1D 1EAH4 1AR94 1HRI4 2RR14 1D4M4 1VBB4 2HWB4 2R074 1RMU4 2RS54 1K5MD 3JBG4 3JD74 1R094 1POV0 1RUH4 1Z7S4 1RUC4 4PDWD 2X5ID 2RMU4 4Q4Y4 1VBA4 1RVF4 1PVC4 1RUD4 1AR84 1HXS4 1RUG4 1HRV4 1OOPD 1RHI4 4Q4V4 4RHV4 4Q4X4 1EV14 2PLV4
chains in the Genus database with same CATH superfamily

2PW9A 2R064 1NCQD 1MQTD 1AR64 1VBC4 1KFYA 2WQYA 2PY5A 2WDVA 1VBD4 1NA1D 3AEBA 2RR14 2ACZA 2EX3A 1RMU4 2RS54 3JBG4 1RUH4 1RUC4 2R7FA 3AE2A 3CIRA 4PDWD 4YSZA 2X5ID 4Q4Y4 3SUCA 1VBA4 1PVC4 1RUD4 3P4SA 1RUG4 3GQHA 1OOPD 4RHV4 1HRV4 1COV4 4GB34 1AR74 1YQ3A 1PO14 2HWC4 3AEAA 1BEV4 2RS14 4KX6A 3AE3A 3J8F4 1RUJ4 3GQKA 5C2TA 1AR94 3AE7A 3AEEA 3P4RA 3SFDA 1NENA 2WU2A 3AEDA 3AEGA 2WS3A 3FI7A 2FBWA 1YQ4A 3P4QA 1RVF4 4YTPA 2WDRA 1HXS4 3AE5A 3VR9A 4Q4W4 3AE1A 1R084 1PIV4 1PO24 1VRH4 2H88A 2RS34 3ABVA 1RUE4 1XHXA 1VBE4 1XI1A 2PYLA 1VBB4 2WP9A 2HWB4 3AE8A 5C3JA 1K5MD 3AE9A 3AEFA 3AE4A 4YSYA 1NEKA 2RMU4 4YSXA 2PYJA 2WDQA 3VR8A 4Q4X4 4Q4V4 3AE6A 1EV14 4YTNA 2R044 2B76A 3VRBA 1L0VA 1H8TD 2RM24 3AECA 1ASJ4 3VRAA 3SFEA 1XHZA 1RUI4 4YXDA 1AL24 2PZSA 1RUF4 1EAH4 1HRI4 1ZP0A 1D4M4 1ZOYA 2R074 4YT0A 1KF6A 3JD74 1R094 1POV0 1Z7S4 3P4PA 4YTMA 1AR84 2WU5A 1RHI4 2H89A 2PLV4
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1COV 4;  2R04 4;  4GB3 4;  4Q4W 4;  1H8T D;  1R08 4;  2RM2 4;  1AR7 4;  1PO1 4;  1ASJ 4;  2R06 4;  2HWC 4;  1NCQ D;  1PIV 4;  1MQT D;  1AR6 4;  1PO2 4;  1VRH 4;  2RS3 4;  1BEV 4;  1VBC 4;  2RS1 4;  1RUE 4;  1RUI 4;  1VBE 4;  1AL2 4;  1RUJ 4;  1VBD 4;  1RUF 4;  3J8F 4;  1NA1 D;  1EAH 4;  1AR9 4;  1HRI 4;  2RR1 4;  1D4M 4;  1VBB 4;  2HWB 4;  2R07 4;  1RMU 4;  2RS5 4;  1K5M D;  3JBG 4;  3JD7 4;  1R09 4;  1POV 0;  1RUH 4;  1Z7S 4;  1RUC 4;  4PDW D;  2X5I D;  2RMU 4;  4Q4Y 4;  1VBA 4;  1RVF 4;  1PVC 4;  1RUD 4;  1AR8 4;  1HXS 4;  1RUG 4;  1HRV 4;  1OOP D;  1RHI 4;  4Q4V 4;  4RHV 4;  4Q4X 4;  1EV1 4;  2PLV 4; 
#chains in the Genus database with same CATH topology
 2PW9 A;  2R06 4;  1NCQ D;  1MQT D;  1AR6 4;  1VBC 4;  1KFY A;  2WQY A;  2PY5 A;  2WDV A;  1VBD 4;  1NA1 D;  3AEB A;  2RR1 4;  2ACZ A;  2EX3 A;  1RMU 4;  2RS5 4;  3JBG 4;  1RUH 4;  1RUC 4;  2R7F A;  3AE2 A;  3CIR A;  4PDW D;  4YSZ A;  2X5I D;  4Q4Y 4;  3SUC A;  1VBA 4;  1PVC 4;  1RUD 4;  3P4S A;  1RUG 4;  3GQH A;  1OOP D;  4RHV 4;  1HRV 4;  1COV 4;  4GB3 4;  1AR7 4;  1YQ3 A;  1PO1 4;  2HWC 4;  3AEA A;  1BEV 4;  2RS1 4;  4KX6 A;  3AE3 A;  3J8F 4;  1RUJ 4;  3GQK A;  5C2T A;  1AR9 4;  3AE7 A;  3AEE A;  3P4R A;  3SFD A;  1NEN A;  2WU2 A;  3AED A;  3AEG A;  2WS3 A;  3FI7 A;  2FBW A;  1YQ4 A;  3P4Q A;  1RVF 4;  4YTP A;  2WDR A;  1HXS 4;  3AE5 A;  3VR9 A;  4Q4W 4;  3AE1 A;  1R08 4;  1PIV 4;  1PO2 4;  1VRH 4;  2H88 A;  2RS3 4;  3ABV A;  1RUE 4;  1XHX A;  1VBE 4;  1XI1 A;  2PYL A;  1VBB 4;  2WP9 A;  2HWB 4;  3AE8 A;  5C3J A;  1K5M D;  3AE9 A;  3AEF A;  3AE4 A;  4YSY A;  1NEK A;  2RMU 4;  4YSX A;  2PYJ A;  2WDQ A;  3VR8 A;  4Q4X 4;  4Q4V 4;  3AE6 A;  1EV1 4;  4YTN A;  2R04 4;  2B76 A;  3VRB A;  1L0V A;  1H8T D;  2RM2 4;  3AEC A;  1ASJ 4;  3VRA A;  3SFE A;  1XHZ A;  1RUI 4;  4YXD A;  1AL2 4;  2PZS A;  1RUF 4;  1EAH 4;  1HRI 4;  1ZP0 A;  1D4M 4;  1ZOY A;  2R07 4;  4YT0 A;  1KF6 A;  3JD7 4;  1R09 4;  1POV 0;  1Z7S 4;  3P4P A;  4YTM A;  1AR8 4;  2WU5 A;  1RHI 4;  2H89 A;  2PLV 4; 
#chains in the Genus database with same CATH homology
 1COV 4;  2R04 4;  4GB3 4;  4Q4W 4;  1H8T D;  1R08 4;  2RM2 4;  1AR7 4;  1PO1 4;  1ASJ 4;  2R06 4;  2HWC 4;  1NCQ D;  1PIV 4;  1MQT D;  1AR6 4;  1PO2 4;  1VRH 4;  2RS3 4;  1BEV 4;  1VBC 4;  2RS1 4;  1RUE 4;  1RUI 4;  1VBE 4;  1AL2 4;  1RUJ 4;  1VBD 4;  1RUF 4;  3J8F 4;  1NA1 D;  1EAH 4;  1AR9 4;  1HRI 4;  2RR1 4;  1D4M 4;  1VBB 4;  2HWB 4;  2R07 4;  1RMU 4;  2RS5 4;  1K5M D;  3JBG 4;  3JD7 4;  1R09 4;  1POV 0;  1RUH 4;  1Z7S 4;  1RUC 4;  4PDW D;  2X5I D;  2RMU 4;  4Q4Y 4;  1VBA 4;  1RVF 4;  1PVC 4;  1RUD 4;  1AR8 4;  1HXS 4;  1RUG 4;  1HRV 4;  1OOP D;  1RHI 4;  4Q4V 4;  4RHV 4;  4Q4X 4;  1EV1 4;  2PLV 4;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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1Z7S4

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations