2HWB4

A comparison of the anti-rhinoviral drug binding pocket in hrv14 and hrv1a
Total Genus 2
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
2
sequence length
40
structure length
40
Chain Sequence
INYYKDAASTSSAGQSLSMDPSKFTEPVKDLMLKGAPALN

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
3H1 (35-37)EMPTYUpdating...
connected with : NaN
molecule tags Virus
source organism Human rhinovirus 14
publication title A comparison of the anti-rhinoviral drug binding pocket in HRV14 and HRV1A.
pubmed doi rcsb
molecule keywords HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1)
total genus 2
structure length 40
sequence length 40
ec nomenclature ec 2.7.7.48: RNA-directed RNA polymerase.
pdb deposition date 1994-01-25

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
4 PF02226 Pico_P1A Picornavirus coat protein (VP4)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.80.10 Few Secondary Structures Irregular Rhinovirus 14, subunit 4 Picornavirus coat protein VP4 2hwb400
1RUJ4 2R074 1VRH4 4Q4X4 1D4M4 1HXS4 1RHI4 1RUF4 4GB34 1R094 1PIV4 1RUG4 2PLV4 2X5ID 1AR74 1RMU4 2RS54 1VBA4 1AR64 1OOPD 1BEV4 1HRI4 2R044 1NCQD 1R084 1VBB4 2RS14 1RUC4 4Q4Y4 1HRV4 1EV14 2RM24 4Q4W4 3J8F4 1PVC4 1POV0 1RUH4 1EAH4 1RUI4 2HWC4 3JD74 1AR84 1ASJ4 1NA1D 1AR94 1COV4 4PDWD 4RHV4 1RVF4 1VBC4 1K5MD 1VBD4 1RUD4 1MQTD 1PO14 1Z7S4 1RUE4 1VBE4 2R064 2RMU4 1AL24 3JBG4 1PO24 2HWB4 2RS34 1H8TD 2RR14 4Q4V4
chains in the Genus database with same CATH superfamily
2PZSA 4YTNA 5C2TA 3AE3A 1D4M4 1HXS4 1RHI4 2H89A 1PIV4 2X5ID 3FI7A 2RS54 1AR64 1BEV4 1R084 2WU2A 3AEBA 1XHZA 4YSXA 3AE1A 1VBC4 1K5MD 3VRAA 3SUCA 3AEGA 1PO14 1Z7S4 3AEEA 3JBG4 3P4QA 3ABVA 2RR14 4YT0A 1KFYA 1RUJ4 4YSYA 1NENA 1RUF4 1RUG4 2PLV4 2WU5A 1AR74 3AEAA 1VBA4 3VRBA 3AEDA 2EX3A 3AE8A 2FBWA 3SFEA 3AE6A 1RUC4 4Q4Y4 1HRV4 1EV14 2R7FA 4Q4W4 3J8F4 1PVC4 1POV0 2PYJA 3GQHA 1VBD4 4YSZA 1MQTD 3VR8A 1VBE4 1AL24 1NEKA 2B76A 3P4PA 3VR9A 2WQYA 2WDQA 4KX6A 4GB34 1R094 1YQ4A 2WS3A 4YTPA 1NCQD 3P4RA 3AECA 3AE4A 3JD74 1AR84 1NA1D 2PY5A 1COV4 1XHXA 4PDWD 1RVF4 4RHV4 1ZP0A 1RUD4 2RMU4 2R064 2PW9A 3GQKA 1PO24 3AE2A 1ZOYA 4Q4V4 2R074 2WDRA 1VRH4 4Q4X4 3AE9A 3SFDA 1KF6A 1YQ3A 5C3JA 1RMU4 3AE7A 3AEFA 1OOPD 2R044 1HRI4 4YXDA 2ACZA 1VBB4 2RS14 2RM24 1RUH4 2PYLA 1EAH4 1RUI4 2HWC4 2WP9A 1ASJ4 2H88A 1AR94 3AE5A 3CIRA 3P4SA 1RUE4 1L0VA 2WDVA 4YTMA 2HWB4 2RS34 1H8TD 1XI1A
chains in the Genus database with same CATH topology
1RUJ4 2R074 1VRH4 4Q4X4 1D4M4 1HXS4 1RHI4 1RUF4 4GB34 1R094 1PIV4 1RUG4 2PLV4 2X5ID 1AR74 1RMU4 2RS54 1VBA4 1AR64 1OOPD 1BEV4 1HRI4 2R044 1NCQD 1R084 1VBB4 2RS14 1RUC4 4Q4Y4 1HRV4 1EV14 2RM24 4Q4W4 3J8F4 1PVC4 1POV0 1RUH4 1EAH4 1RUI4 2HWC4 3JD74 1AR84 1ASJ4 1NA1D 1AR94 1COV4 4PDWD 4RHV4 1RVF4 1VBC4 1K5MD 1VBD4 1RUD4 1MQTD 1PO14 1Z7S4 1RUE4 1VBE4 2R064 2RMU4 1AL24 3JBG4 1PO24 2HWB4 2RS34 1H8TD 2RR14 4Q4V4
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1RUJ 4;  2R07 4;  1VRH 4;  4Q4X 4;  1D4M 4;  1HXS 4;  1RHI 4;  1RUF 4;  4GB3 4;  1R09 4;  1PIV 4;  1RUG 4;  2PLV 4;  2X5I D;  1AR7 4;  1RMU 4;  2RS5 4;  1VBA 4;  1AR6 4;  1OOP D;  1BEV 4;  1HRI 4;  2R04 4;  1NCQ D;  1R08 4;  1VBB 4;  2RS1 4;  1RUC 4;  4Q4Y 4;  1HRV 4;  1EV1 4;  2RM2 4;  4Q4W 4;  3J8F 4;  1PVC 4;  1POV 0;  1RUH 4;  1EAH 4;  1RUI 4;  2HWC 4;  3JD7 4;  1AR8 4;  1ASJ 4;  1NA1 D;  1AR9 4;  1COV 4;  4PDW D;  4RHV 4;  1RVF 4;  1VBC 4;  1K5M D;  1VBD 4;  1RUD 4;  1MQT D;  1PO1 4;  1Z7S 4;  1RUE 4;  1VBE 4;  2R06 4;  2RMU 4;  1AL2 4;  3JBG 4;  1PO2 4;  2HWB 4;  2RS3 4;  1H8T D;  2RR1 4;  4Q4V 4; 
#chains in the Genus database with same CATH topology
 2PZS A;  4YTN A;  5C2T A;  3AE3 A;  1D4M 4;  1HXS 4;  1RHI 4;  2H89 A;  1PIV 4;  2X5I D;  3FI7 A;  2RS5 4;  1AR6 4;  1BEV 4;  1R08 4;  2WU2 A;  3AEB A;  1XHZ A;  4YSX A;  3AE1 A;  1VBC 4;  1K5M D;  3VRA A;  3SUC A;  3AEG A;  1PO1 4;  1Z7S 4;  3AEE A;  3JBG 4;  3P4Q A;  3ABV A;  2RR1 4;  4YT0 A;  1KFY A;  1RUJ 4;  4YSY A;  1NEN A;  1RUF 4;  1RUG 4;  2PLV 4;  2WU5 A;  1AR7 4;  3AEA A;  1VBA 4;  3VRB A;  3AED A;  2EX3 A;  3AE8 A;  2FBW A;  3SFE A;  3AE6 A;  1RUC 4;  4Q4Y 4;  1HRV 4;  1EV1 4;  2R7F A;  4Q4W 4;  3J8F 4;  1PVC 4;  1POV 0;  2PYJ A;  3GQH A;  1VBD 4;  4YSZ A;  1MQT D;  3VR8 A;  1VBE 4;  1AL2 4;  1NEK A;  2B76 A;  3P4P A;  3VR9 A;  2WQY A;  2WDQ A;  4KX6 A;  4GB3 4;  1R09 4;  1YQ4 A;  2WS3 A;  4YTP A;  1NCQ D;  3P4R A;  3AEC A;  3AE4 A;  3JD7 4;  1AR8 4;  1NA1 D;  2PY5 A;  1COV 4;  1XHX A;  4PDW D;  1RVF 4;  4RHV 4;  1ZP0 A;  1RUD 4;  2RMU 4;  2R06 4;  2PW9 A;  3GQK A;  1PO2 4;  3AE2 A;  1ZOY A;  4Q4V 4;  2R07 4;  2WDR A;  1VRH 4;  4Q4X 4;  3AE9 A;  3SFD A;  1KF6 A;  1YQ3 A;  5C3J A;  1RMU 4;  3AE7 A;  3AEF A;  1OOP D;  2R04 4;  1HRI 4;  4YXD A;  2ACZ A;  1VBB 4;  2RS1 4;  2RM2 4;  1RUH 4;  2PYL A;  1EAH 4;  1RUI 4;  2HWC 4;  2WP9 A;  1ASJ 4;  2H88 A;  1AR9 4;  3AE5 A;  3CIR A;  3P4S A;  1RUE 4;  1L0V A;  2WDV A;  4YTM A;  2HWB 4;  2RS3 4;  1H8T D;  1XI1 A; 
#chains in the Genus database with same CATH homology
 1RUJ 4;  2R07 4;  1VRH 4;  4Q4X 4;  1D4M 4;  1HXS 4;  1RHI 4;  1RUF 4;  4GB3 4;  1R09 4;  1PIV 4;  1RUG 4;  2PLV 4;  2X5I D;  1AR7 4;  1RMU 4;  2RS5 4;  1VBA 4;  1AR6 4;  1OOP D;  1BEV 4;  1HRI 4;  2R04 4;  1NCQ D;  1R08 4;  1VBB 4;  2RS1 4;  1RUC 4;  4Q4Y 4;  1HRV 4;  1EV1 4;  2RM2 4;  4Q4W 4;  3J8F 4;  1PVC 4;  1POV 0;  1RUH 4;  1EAH 4;  1RUI 4;  2HWC 4;  3JD7 4;  1AR8 4;  1ASJ 4;  1NA1 D;  1AR9 4;  1COV 4;  4PDW D;  4RHV 4;  1RVF 4;  1VBC 4;  1K5M D;  1VBD 4;  1RUD 4;  1MQT D;  1PO1 4;  1Z7S 4;  1RUE 4;  1VBE 4;  2R06 4;  2RMU 4;  1AL2 4;  3JBG 4;  1PO2 4;  2HWB 4;  2RS3 4;  1H8T D;  2RR1 4;  4Q4V 4; 
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similar chains in the pdb database (?% sequence similarity)

 
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