2R044

Structural analysis of antiviral agents that interact with the capsid of human rhinoviruses
Total Genus 2
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
2
sequence length
40
structure length
40
Chain Sequence
INYYKDAASTSSAGQSLSMDPSKFTEPVKDLMLKGAPALN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural analysis of antiviral agents that interact with the capsid of human rhinoviruses.
pubmed doi rcsb
molecule tags Virus
source organism Human rhinovirus 14
molecule keywords HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1)
total genus 2
structure length 40
sequence length 40
ec nomenclature ec 2.7.7.48: RNA-directed RNA polymerase.
pdb deposition date 1988-10-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
4 PF02226 Pico_P1A Picornavirus coat protein (VP4)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.80.10 Few Secondary Structures Irregular Rhinovirus 14, subunit 4 Picornavirus coat protein VP4 2r04400
1RUE4 2R044 2X5ID 4Q4Y4 4Q4W4 1H8TD 1VBD4 1VBB4 1AR84 2RR14 3JD74 1RUF4 4Q4X4 1PVC4 1AR64 1VBA4 1VBE4 4PDWD 2RM24 1RUD4 2R074 1ASJ4 1AR74 4GB34 4RHV4 1OOPD 1POV0 1VBC4 1RUJ4 1HRV4 2RMU4 2RS14 1COV4 1AR94 1RUC4 1PO14 1HXS4 1MQTD 1R084 1AL24 1EAH4 1BEV4 1PO24 3JBG4 1NA1D 2HWB4 1NCQD 1RVF4 2RS54 3J8F4 1RUH4 1R094 2RS34 2PLV4 1PIV4 1K5MD 1Z7S4 2HWC4 1RHI4 1HRI4 4Q4V4 1D4M4 2R064 1RUG4 1RUI4 1EV14 1RMU4 1VRH4
chains in the Genus database with same CATH superfamily
1RUE4 3AE4A 1VBD4 2RR14 1RUF4 1PVC4 1YQ3A 2RM24 1RUD4 4RHV4 4YT0A 3VRAA 1PO14 1BEV4 5C2TA 3JBG4 4YSZA 1L0VA 2WDVA 3AE1A 1PIV4 1K5MD 2WDQA 1RUG4 3SFEA 2PYJA 2R064 3P4RA 2R044 4YTNA 2PY5A 4Q4W4 2H89A 2WS3A 1ZP0A 4Q4X4 1VBE4 3P4PA 4YTMA 4YSYA 1XHXA 1OOPD 1POV0 3AE9A 1VBC4 1RUJ4 1HRV4 2RMU4 1HXS4 1R084 3P4SA 1EAH4 2WDRA 1NEKA 1NA1D 1NENA 3SUCA 1RVF4 3VR8A 1XHZA 3AEAA 2RS34 1Z7S4 3AEFA 1RUI4 2X5ID 4Q4Y4 3ABVA 3VR9A 2R7FA 1YQ4A 2WU2A 4YXDA 4YSXA 1VBB4 1KFYA 1KF6A 3AE2A 2RS14 1COV4 3AE8A 3AE5A 2PW9A 3SFDA 5C3JA 3AECA 2WP9A 2PZSA 2RS54 2WU5A 1RUH4 1R094 2PLV4 4Q4V4 1D4M4 2H88A 3AEDA 2EX3A 1RMU4 3FI7A 1VRH4 1H8TD 3P4QA 3AE6A 2WQYA 1AR84 1ZOYA 3JD74 4KX6A 2ACZA 3AE3A 1AR64 1VBA4 2B76A 3GQHA 4PDWD 2R074 1ASJ4 1AR74 4GB34 1XI1A 2FBWA 1AR94 1RUC4 1MQTD 1AL24 1PO24 2HWB4 1NCQD 3CIRA 3J8F4 3GQKA 2PYLA 2HWC4 1RHI4 1HRI4 3AE7A 3AEBA 3AEGA 3AEEA 4YTPA 3VRBA 1EV14
chains in the Genus database with same CATH topology
1RUE4 2R044 2X5ID 4Q4Y4 4Q4W4 1H8TD 1VBD4 1VBB4 1AR84 2RR14 3JD74 1RUF4 4Q4X4 1PVC4 1AR64 1VBA4 1VBE4 4PDWD 2RM24 1RUD4 2R074 1ASJ4 1AR74 4GB34 4RHV4 1OOPD 1POV0 1VBC4 1RUJ4 1HRV4 2RMU4 2RS14 1COV4 1AR94 1RUC4 1PO14 1HXS4 1MQTD 1R084 1AL24 1EAH4 1BEV4 1PO24 3JBG4 1NA1D 2HWB4 1NCQD 1RVF4 2RS54 3J8F4 1RUH4 1R094 2RS34 2PLV4 1PIV4 1K5MD 1Z7S4 2HWC4 1RHI4 1HRI4 4Q4V4 1D4M4 2R064 1RUG4 1RUI4 1EV14 1RMU4 1VRH4
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1RUE 4;  2R04 4;  2X5I D;  4Q4Y 4;  4Q4W 4;  1H8T D;  1VBD 4;  1VBB 4;  1AR8 4;  2RR1 4;  3JD7 4;  1RUF 4;  4Q4X 4;  1PVC 4;  1AR6 4;  1VBA 4;  1VBE 4;  4PDW D;  2RM2 4;  1RUD 4;  2R07 4;  1ASJ 4;  1AR7 4;  4GB3 4;  4RHV 4;  1OOP D;  1POV 0;  1VBC 4;  1RUJ 4;  1HRV 4;  2RMU 4;  2RS1 4;  1COV 4;  1AR9 4;  1RUC 4;  1PO1 4;  1HXS 4;  1MQT D;  1R08 4;  1AL2 4;  1EAH 4;  1BEV 4;  1PO2 4;  3JBG 4;  1NA1 D;  2HWB 4;  1NCQ D;  1RVF 4;  2RS5 4;  3J8F 4;  1RUH 4;  1R09 4;  2RS3 4;  2PLV 4;  1PIV 4;  1K5M D;  1Z7S 4;  2HWC 4;  1RHI 4;  1HRI 4;  4Q4V 4;  1D4M 4;  2R06 4;  1RUG 4;  1RUI 4;  1EV1 4;  1RMU 4;  1VRH 4; 
#chains in the Genus database with same CATH topology
 1RUE 4;  3AE4 A;  1VBD 4;  2RR1 4;  1RUF 4;  1PVC 4;  1YQ3 A;  2RM2 4;  1RUD 4;  4RHV 4;  4YT0 A;  3VRA A;  1PO1 4;  1BEV 4;  5C2T A;  3JBG 4;  4YSZ A;  1L0V A;  2WDV A;  3AE1 A;  1PIV 4;  1K5M D;  2WDQ A;  1RUG 4;  3SFE A;  2PYJ A;  2R06 4;  3P4R A;  2R04 4;  4YTN A;  2PY5 A;  4Q4W 4;  2H89 A;  2WS3 A;  1ZP0 A;  4Q4X 4;  1VBE 4;  3P4P A;  4YTM A;  4YSY A;  1XHX A;  1OOP D;  1POV 0;  3AE9 A;  1VBC 4;  1RUJ 4;  1HRV 4;  2RMU 4;  1HXS 4;  1R08 4;  3P4S A;  1EAH 4;  2WDR A;  1NEK A;  1NA1 D;  1NEN A;  3SUC A;  1RVF 4;  3VR8 A;  1XHZ A;  3AEA A;  2RS3 4;  1Z7S 4;  3AEF A;  1RUI 4;  2X5I D;  4Q4Y 4;  3ABV A;  3VR9 A;  2R7F A;  1YQ4 A;  2WU2 A;  4YXD A;  4YSX A;  1VBB 4;  1KFY A;  1KF6 A;  3AE2 A;  2RS1 4;  1COV 4;  3AE8 A;  3AE5 A;  2PW9 A;  3SFD A;  5C3J A;  3AEC A;  2WP9 A;  2PZS A;  2RS5 4;  2WU5 A;  1RUH 4;  1R09 4;  2PLV 4;  4Q4V 4;  1D4M 4;  2H88 A;  3AED A;  2EX3 A;  1RMU 4;  3FI7 A;  1VRH 4;  1H8T D;  3P4Q A;  3AE6 A;  2WQY A;  1AR8 4;  1ZOY A;  3JD7 4;  4KX6 A;  2ACZ A;  3AE3 A;  1AR6 4;  1VBA 4;  2B76 A;  3GQH A;  4PDW D;  2R07 4;  1ASJ 4;  1AR7 4;  4GB3 4;  1XI1 A;  2FBW A;  1AR9 4;  1RUC 4;  1MQT D;  1AL2 4;  1PO2 4;  2HWB 4;  1NCQ D;  3CIR A;  3J8F 4;  3GQK A;  2PYL A;  2HWC 4;  1RHI 4;  1HRI 4;  3AE7 A;  3AEB A;  3AEG A;  3AEE A;  4YTP A;  3VRB A;  1EV1 4; 
#chains in the Genus database with same CATH homology
 1RUE 4;  2R04 4;  2X5I D;  4Q4Y 4;  4Q4W 4;  1H8T D;  1VBD 4;  1VBB 4;  1AR8 4;  2RR1 4;  3JD7 4;  1RUF 4;  4Q4X 4;  1PVC 4;  1AR6 4;  1VBA 4;  1VBE 4;  4PDW D;  2RM2 4;  1RUD 4;  2R07 4;  1ASJ 4;  1AR7 4;  4GB3 4;  4RHV 4;  1OOP D;  1POV 0;  1VBC 4;  1RUJ 4;  1HRV 4;  2RMU 4;  2RS1 4;  1COV 4;  1AR9 4;  1RUC 4;  1PO1 4;  1HXS 4;  1MQT D;  1R08 4;  1AL2 4;  1EAH 4;  1BEV 4;  1PO2 4;  3JBG 4;  1NA1 D;  2HWB 4;  1NCQ D;  1RVF 4;  2RS5 4;  3J8F 4;  1RUH 4;  1R09 4;  2RS3 4;  2PLV 4;  1PIV 4;  1K5M D;  1Z7S 4;  2HWC 4;  1RHI 4;  1HRI 4;  4Q4V 4;  1D4M 4;  2R06 4;  1RUG 4;  1RUI 4;  1EV1 4;  1RMU 4;  1VRH 4; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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