2R044

Structural analysis of antiviral agents that interact with the capsid of human rhinoviruses
Total Genus 2

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
2
sequence length
40
structure length
40
Chain Sequence
INYYKDAASTSSAGQSLSMDPSKFTEPVKDLMLKGAPALN

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
3H1 (35-37)EMPTYUpdating...
connected with : NaN
molecule tags Virus
source organism Human rhinovirus 14
publication title Structural analysis of antiviral agents that interact with the capsid of human rhinoviruses.
pubmed doi rcsb
molecule keywords HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1)
total genus 2
structure length 40
sequence length 40
ec nomenclature ec 2.7.7.48: RNA-directed RNA polymerase.
pdb deposition date 1988-10-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
4 PF02226 Pico_P1A Picornavirus coat protein (VP4)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.80.10 Few Secondary Structures Irregular Rhinovirus 14, subunit 4 Picornavirus coat protein VP4 2r04400
1VRH4 1ASJ4 4PDWD 1RUC4 4GB34 1HRV4 1RUF4 4Q4X4 1EAH4 2R064 4RHV4 1RMU4 1RUE4 3JD74 1R084 4Q4Y4 1Z7S4 2HWC4 2R074 1AR64 1K5MD 1RUD4 1RHI4 3JBG4 4Q4V4 1RUH4 1D4M4 1PIV4 1VBD4 1EV14 2RS34 1PO24 1RVF4 1MQTD 1RUI4 1VBC4 1VBE4 2PLV4 2RMU4 2RS54 1COV4 1NCQD 1OOPD 1NA1D 1AR74 1VBA4 2RM24 1H8TD 4Q4W4 1POV0 1R094 1BEV4 1AL24 2HWB4 3J8F4 1HXS4 1RUG4 2R044 1PVC4 1AR94 1RUJ4 1PO14 2X5ID 1VBB4 1AR84 2RS14 2RR14 1HRI4
chains in the Genus database with same CATH superfamily
1VRH4 4GB34 3ABVA 4Q4X4 3AE3A 2PYLA 1Z7S4 1XI1A 1NEKA 1D4M4 1RUI4 2PW9A 2RMU4 2RS54 3AE2A 2R7FA 1NCQD 1OOPD 3GQKA 4Q4W4 3J8F4 3P4PA 3VRBA 1HXS4 2R044 3P4QA 1YQ4A 4YT0A 1PVC4 1ZP0A 1PO14 1AR84 1HRI4 4PDWD 1L0VA 1RUC4 1RUF4 2R064 3AEEA 1R084 4Q4Y4 3P4SA 5C2TA 4KX6A 3AE4A 1AR64 4YSZA 3AEAA 4Q4V4 1XHXA 1PIV4 2EX3A 2RS34 1MQTD 1ZOYA 4YSXA 3CIRA 2FBWA 1BEV4 1XHZA 1RUG4 2WDVA 1RUJ4 2X5ID 3AEBA 3FI7A 2ACZA 2RS14 1RUD4 2PZSA 2H88A 2WS3A 1HRV4 1EAH4 3AEDA 3AE5A 2WP9A 2PY5A 1RMU4 1RUE4 3VRAA 3JD74 3AE6A 4YTMA 2PYJA 2R074 3VR9A 4YXDA 1RHI4 3AEGA 3JBG4 1NENA 1KFYA 2WDQA 3AECA 3AE1A 1PO24 1RVF4 2PLV4 1COV4 3AE8A 2RM24 1H8TD 4YTPA 2HWB4 2WDRA 4YSYA 1AR94 1VBB4 2H89A 2RR14 1VBC4 1ASJ4 4YTNA 3GQHA 4RHV4 3SUCA 2WU5A 3AE7A 2B76A 2HWC4 3SFDA 3P4RA 1K5MD 1RUH4 1VBD4 1EV14 1KF6A 1VBE4 1YQ3A 1NA1D 1AR74 1VBA4 1POV0 1R094 5C3JA 1AL24 3VR8A 3AE9A 2WU2A 2WQYA 3AEFA 3SFEA
chains in the Genus database with same CATH topology
1VRH4 1ASJ4 4PDWD 1RUC4 4GB34 1HRV4 1RUF4 4Q4X4 1EAH4 2R064 4RHV4 1RMU4 1RUE4 3JD74 1R084 4Q4Y4 1Z7S4 2HWC4 2R074 1AR64 1K5MD 1RUD4 1RHI4 3JBG4 4Q4V4 1RUH4 1D4M4 1PIV4 1VBD4 1EV14 2RS34 1PO24 1RVF4 1MQTD 1RUI4 1VBC4 1VBE4 2PLV4 2RMU4 2RS54 1COV4 1NCQD 1OOPD 1NA1D 1AR74 1VBA4 2RM24 1H8TD 4Q4W4 1POV0 1R094 1BEV4 1AL24 2HWB4 3J8F4 1HXS4 1RUG4 2R044 1PVC4 1AR94 1RUJ4 1PO14 2X5ID 1VBB4 1AR84 2RS14 2RR14 1HRI4
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1VRH 4;  1ASJ 4;  4PDW D;  1RUC 4;  4GB3 4;  1HRV 4;  1RUF 4;  4Q4X 4;  1EAH 4;  2R06 4;  4RHV 4;  1RMU 4;  1RUE 4;  3JD7 4;  1R08 4;  4Q4Y 4;  1Z7S 4;  2HWC 4;  2R07 4;  1AR6 4;  1K5M D;  1RUD 4;  1RHI 4;  3JBG 4;  4Q4V 4;  1RUH 4;  1D4M 4;  1PIV 4;  1VBD 4;  1EV1 4;  2RS3 4;  1PO2 4;  1RVF 4;  1MQT D;  1RUI 4;  1VBC 4;  1VBE 4;  2PLV 4;  2RMU 4;  2RS5 4;  1COV 4;  1NCQ D;  1OOP D;  1NA1 D;  1AR7 4;  1VBA 4;  2RM2 4;  1H8T D;  4Q4W 4;  1POV 0;  1R09 4;  1BEV 4;  1AL2 4;  2HWB 4;  3J8F 4;  1HXS 4;  1RUG 4;  2R04 4;  1PVC 4;  1AR9 4;  1RUJ 4;  1PO1 4;  2X5I D;  1VBB 4;  1AR8 4;  2RS1 4;  2RR1 4;  1HRI 4; 
#chains in the Genus database with same CATH topology
 1VRH 4;  4GB3 4;  3ABV A;  4Q4X 4;  3AE3 A;  2PYL A;  1Z7S 4;  1XI1 A;  1NEK A;  1D4M 4;  1RUI 4;  2PW9 A;  2RMU 4;  2RS5 4;  3AE2 A;  2R7F A;  1NCQ D;  1OOP D;  3GQK A;  4Q4W 4;  3J8F 4;  3P4P A;  3VRB A;  1HXS 4;  2R04 4;  3P4Q A;  1YQ4 A;  4YT0 A;  1PVC 4;  1ZP0 A;  1PO1 4;  1AR8 4;  1HRI 4;  4PDW D;  1L0V A;  1RUC 4;  1RUF 4;  2R06 4;  3AEE A;  1R08 4;  4Q4Y 4;  3P4S A;  5C2T A;  4KX6 A;  3AE4 A;  1AR6 4;  4YSZ A;  3AEA A;  4Q4V 4;  1XHX A;  1PIV 4;  2EX3 A;  2RS3 4;  1MQT D;  1ZOY A;  4YSX A;  3CIR A;  2FBW A;  1BEV 4;  1XHZ A;  1RUG 4;  2WDV A;  1RUJ 4;  2X5I D;  3AEB A;  3FI7 A;  2ACZ A;  2RS1 4;  1RUD 4;  2PZS A;  2H88 A;  2WS3 A;  1HRV 4;  1EAH 4;  3AED A;  3AE5 A;  2WP9 A;  2PY5 A;  1RMU 4;  1RUE 4;  3VRA A;  3JD7 4;  3AE6 A;  4YTM A;  2PYJ A;  2R07 4;  3VR9 A;  4YXD A;  1RHI 4;  3AEG A;  3JBG 4;  1NEN A;  1KFY A;  2WDQ A;  3AEC A;  3AE1 A;  1PO2 4;  1RVF 4;  2PLV 4;  1COV 4;  3AE8 A;  2RM2 4;  1H8T D;  4YTP A;  2HWB 4;  2WDR A;  4YSY A;  1AR9 4;  1VBB 4;  2H89 A;  2RR1 4;  1VBC 4;  1ASJ 4;  4YTN A;  3GQH A;  4RHV 4;  3SUC A;  2WU5 A;  3AE7 A;  2B76 A;  2HWC 4;  3SFD A;  3P4R A;  1K5M D;  1RUH 4;  1VBD 4;  1EV1 4;  1KF6 A;  1VBE 4;  1YQ3 A;  1NA1 D;  1AR7 4;  1VBA 4;  1POV 0;  1R09 4;  5C3J A;  1AL2 4;  3VR8 A;  3AE9 A;  2WU2 A;  2WQY A;  3AEF A;  3SFE A; 
#chains in the Genus database with same CATH homology
 1VRH 4;  1ASJ 4;  4PDW D;  1RUC 4;  4GB3 4;  1HRV 4;  1RUF 4;  4Q4X 4;  1EAH 4;  2R06 4;  4RHV 4;  1RMU 4;  1RUE 4;  3JD7 4;  1R08 4;  4Q4Y 4;  1Z7S 4;  2HWC 4;  2R07 4;  1AR6 4;  1K5M D;  1RUD 4;  1RHI 4;  3JBG 4;  4Q4V 4;  1RUH 4;  1D4M 4;  1PIV 4;  1VBD 4;  1EV1 4;  2RS3 4;  1PO2 4;  1RVF 4;  1MQT D;  1RUI 4;  1VBC 4;  1VBE 4;  2PLV 4;  2RMU 4;  2RS5 4;  1COV 4;  1NCQ D;  1OOP D;  1NA1 D;  1AR7 4;  1VBA 4;  2RM2 4;  1H8T D;  4Q4W 4;  1POV 0;  1R09 4;  1BEV 4;  1AL2 4;  2HWB 4;  3J8F 4;  1HXS 4;  1RUG 4;  2R04 4;  1PVC 4;  1AR9 4;  1RUJ 4;  1PO1 4;  2X5I D;  1VBB 4;  1AR8 4;  2RS1 4;  2RR1 4;  1HRI 4; 
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similar chains in the pdb database (?% sequence similarity)

 
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