2R06 | Genus

Total Genus 2

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	2
sequence length	40
structure length	40
Chain Sequence	INYYKDAASTSSAGQSLSMDPSKFTEPVKDLMLKGAPALN

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Virus
source organism	Human rhinovirus 14
publication title	Structural analysis of antiviral agents that interact with the capsid of human rhinoviruses. pubmed doi rcsb
molecule keywords	HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1)
total genus	2
structure length	40
sequence length	40
ec nomenclature	ec 2.7.7.48: RNA-directed RNA polymerase.
pdb deposition date	1988-10-03

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
4	PF02226	Pico_P1A	Picornavirus coat protein (VP4)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
4.10.80.10	Few Secondary Structures	Irregular	Rhinovirus 14, subunit 4	Picornavirus coat protein VP4	2r06400

3JBG4 1RUI4 1AR94 1AR64 1MQTD 1RUD4 1Z7S4 1BEV4 2RS54 2HWC4 4PDWD 1RUJ4 1ASJ4 1PVC4 1HRI4 3J8F4 1VBB4 2R064 1COV4 4Q4W4 2X5ID 1VBD4 4GB34 2R044 1AL24 2R074 4Q4V4 1OOPD 1POV0 1RUC4 1RUG4 2PLV4 1AR84 1RVF4 1NCQD 1RUE4 1VBC4 2RM24 1R094 1NA1D 2HWB4 1EV14 1HXS4 1RUF4 1EAH4 1RHI4 1RUH4 1VBE4 2RS14 4RHV4 1K5MD 1R084 1PO14 1AR74 4Q4X4 2RMU4 1PIV4 1PO24 1VRH4 2RR14 1RMU4 2RS34 4Q4Y4 3JD74 1VBA4 1D4M4 1HRV4 1H8TD
chains in the Genus database with same CATH superfamily

3JBG4 1Z7S4 1MQTD 2RS54 3GQHA 1ASJ4 1NENA 1HRI4 2WQYA 1VBB4 3P4PA 5C2TA 2R044 1AL24 1AR84 1RVF4 4YSZA 1VBC4 1HXS4 1EAH4 4Q4X4 3AEGA 1K5MD 3P4RA 4YT0A 2PYJA 1VRH4 3AEDA 2RS34 3JD74 3SUCA 3FI7A 4YSYA 1RUI4 1RUD4 1BEV4 3VR8A 1RUJ4 2PZSA 4YTNA 2ACZA 3CIRA 2H89A 1L0VA 1POV0 3AE4A 3AE5A 1KF6A 1NCQD 1RUE4 1YQ3A 2RM24 1AR74 1XHZA 2FBWA 1PIV4 4KX6A 1RMU4 1VBA4 1HRV4 2WDQA 1AR64 4PDWD 4YTPA 2HWC4 3P4QA 1NEKA 3AE6A 1PVC4 3J8F4 3AE1A 2R064 4Q4W4 2X5ID 3AE2A 4GB34 2WDRA 4Q4V4 1RUC4 1RUG4 2WDVA 4YXDA 3VRAA 3AEEA 3AECA 2PY5A 3AE3A 3SFEA 2HWB4 1EV14 1RUF4 1RUH4 3AE8A 1ZOYA 3VRBA 3ABVA 1PO14 2RMU4 2PYLA 2RR14 2WU2A 3AEBA 2PW9A 1XI1A 2H88A 1YQ4A 1AR94 1KFYA 3AE7A 2WU5A 1ZP0A 3AEAA 4YSXA 1COV4 1VBD4 2EX3A 2R074 5C3JA 1OOPD 3AE9A 3GQKA 2PLV4 2WP9A 2B76A 1R094 2WS3A 1NA1D 3AEFA 1VBE4 3SFDA 1RHI4 4RHV4 2RS14 1R084 1PO24 4YTMA 4Q4Y4 3VR9A 1D4M4 2R7FA 1XHXA 3P4SA 1H8TD
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 3JBG 4;  1RUI 4;  1AR9 4;  1AR6 4;  1MQT D;  1RUD 4;  1Z7S 4;  1BEV 4;  2RS5 4;  2HWC 4;  4PDW D;  1RUJ 4;  1ASJ 4;  1PVC 4;  1HRI 4;  3J8F 4;  1VBB 4;  2R06 4;  1COV 4;  4Q4W 4;  2X5I D;  1VBD 4;  4GB3 4;  2R04 4;  1AL2 4;  2R07 4;  4Q4V 4;  1OOP D;  1POV 0;  1RUC 4;  1RUG 4;  2PLV 4;  1AR8 4;  1RVF 4;  1NCQ D;  1RUE 4;  1VBC 4;  2RM2 4;  1R09 4;  1NA1 D;  2HWB 4;  1EV1 4;  1HXS 4;  1RUF 4;  1EAH 4;  1RHI 4;  1RUH 4;  1VBE 4;  2RS1 4;  4RHV 4;  1K5M D;  1R08 4;  1PO1 4;  1AR7 4;  4Q4X 4;  2RMU 4;  1PIV 4;  1PO2 4;  1VRH 4;  2RR1 4;  1RMU 4;  2RS3 4;  4Q4Y 4;  3JD7 4;  1VBA 4;  1D4M 4;  1HRV 4;  1H8T D; 
#chains in the Genus database with same CATH topology
 3JBG 4;  1Z7S 4;  1MQT D;  2RS5 4;  3GQH A;  1ASJ 4;  1NEN A;  1HRI 4;  2WQY A;  1VBB 4;  3P4P A;  5C2T A;  2R04 4;  1AL2 4;  1AR8 4;  1RVF 4;  4YSZ A;  1VBC 4;  1HXS 4;  1EAH 4;  4Q4X 4;  3AEG A;  1K5M D;  3P4R A;  4YT0 A;  2PYJ A;  1VRH 4;  3AED A;  2RS3 4;  3JD7 4;  3SUC A;  3FI7 A;  4YSY A;  1RUI 4;  1RUD 4;  1BEV 4;  3VR8 A;  1RUJ 4;  2PZS A;  4YTN A;  2ACZ A;  3CIR A;  2H89 A;  1L0V A;  1POV 0;  3AE4 A;  3AE5 A;  1KF6 A;  1NCQ D;  1RUE 4;  1YQ3 A;  2RM2 4;  1AR7 4;  1XHZ A;  2FBW A;  1PIV 4;  4KX6 A;  1RMU 4;  1VBA 4;  1HRV 4;  2WDQ A;  1AR6 4;  4PDW D;  4YTP A;  2HWC 4;  3P4Q A;  1NEK A;  3AE6 A;  1PVC 4;  3J8F 4;  3AE1 A;  2R06 4;  4Q4W 4;  2X5I D;  3AE2 A;  4GB3 4;  2WDR A;  4Q4V 4;  1RUC 4;  1RUG 4;  2WDV A;  4YXD A;  3VRA A;  3AEE A;  3AEC A;  2PY5 A;  3AE3 A;  3SFE A;  2HWB 4;  1EV1 4;  1RUF 4;  1RUH 4;  3AE8 A;  1ZOY A;  3VRB A;  3ABV A;  1PO1 4;  2RMU 4;  2PYL A;  2RR1 4;  2WU2 A;  3AEB A;  2PW9 A;  1XI1 A;  2H88 A;  1YQ4 A;  1AR9 4;  1KFY A;  3AE7 A;  2WU5 A;  1ZP0 A;  3AEA A;  4YSX A;  1COV 4;  1VBD 4;  2EX3 A;  2R07 4;  5C3J A;  1OOP D;  3AE9 A;  3GQK A;  2PLV 4;  2WP9 A;  2B76 A;  1R09 4;  2WS3 A;  1NA1 D;  3AEF A;  1VBE 4;  3SFD A;  1RHI 4;  4RHV 4;  2RS1 4;  1R08 4;  1PO2 4;  4YTM A;  4Q4Y 4;  3VR9 A;  1D4M 4;  2R7F A;  1XHX A;  3P4S A;  1H8T D; 
#chains in the Genus database with same CATH homology
 3JBG 4;  1RUI 4;  1AR9 4;  1AR6 4;  1MQT D;  1RUD 4;  1Z7S 4;  1BEV 4;  2RS5 4;  2HWC 4;  4PDW D;  1RUJ 4;  1ASJ 4;  1PVC 4;  1HRI 4;  3J8F 4;  1VBB 4;  2R06 4;  1COV 4;  4Q4W 4;  2X5I D;  1VBD 4;  4GB3 4;  2R04 4;  1AL2 4;  2R07 4;  4Q4V 4;  1OOP D;  1POV 0;  1RUC 4;  1RUG 4;  2PLV 4;  1AR8 4;  1RVF 4;  1NCQ D;  1RUE 4;  1VBC 4;  2RM2 4;  1R09 4;  1NA1 D;  2HWB 4;  1EV1 4;  1HXS 4;  1RUF 4;  1EAH 4;  1RHI 4;  1RUH 4;  1VBE 4;  2RS1 4;  4RHV 4;  1K5M D;  1R08 4;  1PO1 4;  1AR7 4;  4Q4X 4;  2RMU 4;  1PIV 4;  1PO2 4;  1VRH 4;  2RR1 4;  1RMU 4;  2RS3 4;  4Q4Y 4;  3JD7 4;  1VBA 4;  1D4M 4;  1HRV 4;  1H8T D;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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2R064

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations