2R074

Structural analysis of antiviral agents that interact with the capsid of human rhinoviruses
Total Genus 2
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
2
sequence length
40
structure length
40
Chain Sequence
INYYKDAASTSSAGQSLSMDPSKFTEPVKDLMLKGAPALN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title Structural analysis of antiviral agents that interact with the capsid of human rhinoviruses.
pubmed doi rcsb
molecule tags Virus
source organism Human rhinovirus 14
molecule keywords HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1)
total genus 2
structure length 40
sequence length 40
ec nomenclature ec 2.7.7.48: RNA-directed RNA polymerase.
pdb deposition date 1988-10-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
4 PF02226 Pico_P1A Picornavirus coat protein (VP4)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.80.10 Few Secondary Structures Irregular Rhinovirus 14, subunit 4 Picornavirus coat protein VP4 2r07400
2RR14 4Q4V4 4Q4W4 1Z7S4 1AR74 1R084 1VBD4 1D4M4 4Q4Y4 1NCQD 1AR94 1VBC4 4PDWD 1PO24 1RUC4 1VBB4 2R074 1RUI4 4GB34 1BEV4 1POV0 2HWB4 1OOPD 1HRI4 1HXS4 1RMU4 1HRV4 2RS14 2RS54 4RHV4 1PVC4 1ASJ4 1PO14 2PLV4 2RMU4 1K5MD 1EAH4 1RUG4 3JBG4 1AR64 2RM24 1RUF4 3J8F4 4Q4X4 1NA1D 2R044 1VBA4 1RUJ4 1EV14 1RUD4 1VBE4 2HWC4 2X5ID 2RS34 3JD74 1RVF4 1AR84 1AL24 1COV4 1H8TD 1MQTD 1PIV4 1RUE4 1RUH4 1R094 1VRH4 1RHI4 2R064
chains in the Genus database with same CATH superfamily
4Q4W4 2PYJA 3ABVA 1YQ4A 1D4M4 2B76A 2WDRA 1ZP0A 3VRAA 2FBWA 1POV0 2PZSA 1OOPD 2RS54 1ASJ4 3AE3A 3VRBA 1K5MD 3CIRA 4Q4X4 1NA1D 2R044 3SUCA 3VR8A 1VBE4 2EX3A 2RS34 1H8TD 3AEGA 2WS3A 3AEEA 1R094 1VRH4 2R064 1L0VA 2RR14 1XHZA 3P4SA 3GQHA 1AR94 1RUC4 1VBB4 2R074 2PY5A 4GB34 2PYLA 1BEV4 3AECA 3P4QA 4YSZA 2PW9A 5C2TA 2H89A 1EAH4 1AR64 2RM24 3J8F4 1EV14 3VR9A 4YSYA 4YSXA 2HWC4 3AE5A 4YT0A 3AEAA 1RVF4 4Q4V4 3AE6A 1KF6A 1R084 1KFYA 2WDQA 1VBD4 4YTMA 4Q4Y4 2ACZA 1VBC4 4PDWD 1RUI4 4YTPA 3AE8A 3P4RA 1XHXA 1RMU4 1HXS4 1HRV4 2RS14 4RHV4 1PO14 3JBG4 3AE1A 1RUJ4 3AE7A 3AE4A 1MQTD 1AL24 1COV4 1ZOYA 1RUE4 2WU5A 1RUH4 1RHI4 1NEKA 2WP9A 3SFEA 1Z7S4 1AR74 2H88A 1YQ3A 2WDVA 4YTNA 4KX6A 3P4PA 2WQYA 1NCQD 1PO24 5C3JA 3AE2A 4YXDA 3SFDA 2HWB4 1HRI4 3FI7A 1PVC4 2PLV4 2RMU4 2WU2A 3AE9A 1RUG4 1RUF4 3AEFA 3AEBA 3AEDA 1VBA4 1RUD4 1NENA 2R7FA 2X5ID 3JD74 1XI1A 1AR84 1PIV4 3GQKA
chains in the Genus database with same CATH topology
2RR14 4Q4V4 4Q4W4 1Z7S4 1AR74 1R084 1VBD4 1D4M4 4Q4Y4 1NCQD 1AR94 1VBC4 4PDWD 1PO24 1RUC4 1VBB4 2R074 1RUI4 4GB34 1BEV4 1POV0 2HWB4 1OOPD 1HRI4 1HXS4 1RMU4 1HRV4 2RS14 2RS54 4RHV4 1PVC4 1ASJ4 1PO14 2PLV4 2RMU4 1K5MD 1EAH4 1RUG4 3JBG4 1AR64 2RM24 1RUF4 3J8F4 4Q4X4 1NA1D 2R044 1VBA4 1RUJ4 1EV14 1RUD4 1VBE4 2HWC4 2X5ID 2RS34 3JD74 1RVF4 1AR84 1AL24 1COV4 1H8TD 1MQTD 1PIV4 1RUE4 1RUH4 1R094 1VRH4 1RHI4 2R064
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2RR1 4;  4Q4V 4;  4Q4W 4;  1Z7S 4;  1AR7 4;  1R08 4;  1VBD 4;  1D4M 4;  4Q4Y 4;  1NCQ D;  1AR9 4;  1VBC 4;  4PDW D;  1PO2 4;  1RUC 4;  1VBB 4;  2R07 4;  1RUI 4;  4GB3 4;  1BEV 4;  1POV 0;  2HWB 4;  1OOP D;  1HRI 4;  1HXS 4;  1RMU 4;  1HRV 4;  2RS1 4;  2RS5 4;  4RHV 4;  1PVC 4;  1ASJ 4;  1PO1 4;  2PLV 4;  2RMU 4;  1K5M D;  1EAH 4;  1RUG 4;  3JBG 4;  1AR6 4;  2RM2 4;  1RUF 4;  3J8F 4;  4Q4X 4;  1NA1 D;  2R04 4;  1VBA 4;  1RUJ 4;  1EV1 4;  1RUD 4;  1VBE 4;  2HWC 4;  2X5I D;  2RS3 4;  3JD7 4;  1RVF 4;  1AR8 4;  1AL2 4;  1COV 4;  1H8T D;  1MQT D;  1PIV 4;  1RUE 4;  1RUH 4;  1R09 4;  1VRH 4;  1RHI 4;  2R06 4; 
#chains in the Genus database with same CATH topology
 4Q4W 4;  2PYJ A;  3ABV A;  1YQ4 A;  1D4M 4;  2B76 A;  2WDR A;  1ZP0 A;  3VRA A;  2FBW A;  1POV 0;  2PZS A;  1OOP D;  2RS5 4;  1ASJ 4;  3AE3 A;  3VRB A;  1K5M D;  3CIR A;  4Q4X 4;  1NA1 D;  2R04 4;  3SUC A;  3VR8 A;  1VBE 4;  2EX3 A;  2RS3 4;  1H8T D;  3AEG A;  2WS3 A;  3AEE A;  1R09 4;  1VRH 4;  2R06 4;  1L0V A;  2RR1 4;  1XHZ A;  3P4S A;  3GQH A;  1AR9 4;  1RUC 4;  1VBB 4;  2R07 4;  2PY5 A;  4GB3 4;  2PYL A;  1BEV 4;  3AEC A;  3P4Q A;  4YSZ A;  2PW9 A;  5C2T A;  2H89 A;  1EAH 4;  1AR6 4;  2RM2 4;  3J8F 4;  1EV1 4;  3VR9 A;  4YSY A;  4YSX A;  2HWC 4;  3AE5 A;  4YT0 A;  3AEA A;  1RVF 4;  4Q4V 4;  3AE6 A;  1KF6 A;  1R08 4;  1KFY A;  2WDQ A;  1VBD 4;  4YTM A;  4Q4Y 4;  2ACZ A;  1VBC 4;  4PDW D;  1RUI 4;  4YTP A;  3AE8 A;  3P4R A;  1XHX A;  1RMU 4;  1HXS 4;  1HRV 4;  2RS1 4;  4RHV 4;  1PO1 4;  3JBG 4;  3AE1 A;  1RUJ 4;  3AE7 A;  3AE4 A;  1MQT D;  1AL2 4;  1COV 4;  1ZOY A;  1RUE 4;  2WU5 A;  1RUH 4;  1RHI 4;  1NEK A;  2WP9 A;  3SFE A;  1Z7S 4;  1AR7 4;  2H88 A;  1YQ3 A;  2WDV A;  4YTN A;  4KX6 A;  3P4P A;  2WQY A;  1NCQ D;  1PO2 4;  5C3J A;  3AE2 A;  4YXD A;  3SFD A;  2HWB 4;  1HRI 4;  3FI7 A;  1PVC 4;  2PLV 4;  2RMU 4;  2WU2 A;  3AE9 A;  1RUG 4;  1RUF 4;  3AEF A;  3AEB A;  3AED A;  1VBA 4;  1RUD 4;  1NEN A;  2R7F A;  2X5I D;  3JD7 4;  1XI1 A;  1AR8 4;  1PIV 4;  3GQK A; 
#chains in the Genus database with same CATH homology
 2RR1 4;  4Q4V 4;  4Q4W 4;  1Z7S 4;  1AR7 4;  1R08 4;  1VBD 4;  1D4M 4;  4Q4Y 4;  1NCQ D;  1AR9 4;  1VBC 4;  4PDW D;  1PO2 4;  1RUC 4;  1VBB 4;  2R07 4;  1RUI 4;  4GB3 4;  1BEV 4;  1POV 0;  2HWB 4;  1OOP D;  1HRI 4;  1HXS 4;  1RMU 4;  1HRV 4;  2RS1 4;  2RS5 4;  4RHV 4;  1PVC 4;  1ASJ 4;  1PO1 4;  2PLV 4;  2RMU 4;  1K5M D;  1EAH 4;  1RUG 4;  3JBG 4;  1AR6 4;  2RM2 4;  1RUF 4;  3J8F 4;  4Q4X 4;  1NA1 D;  2R04 4;  1VBA 4;  1RUJ 4;  1EV1 4;  1RUD 4;  1VBE 4;  2HWC 4;  2X5I D;  2RS3 4;  3JD7 4;  1RVF 4;  1AR8 4;  1AL2 4;  1COV 4;  1H8T D;  1MQT D;  1PIV 4;  1RUE 4;  1RUH 4;  1R09 4;  1VRH 4;  1RHI 4;  2R06 4; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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