2RM24

Structural analysis of antiviral agents that interact with the capsid of human rhinoviruses
Total Genus 2

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
2
sequence length
40
structure length
40
Chain Sequence
INYYKDAASTSSAGQSLSMDPSKFTEPVKDLMLKGAPALN

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
3H1 (35-37)EMPTYUpdating...
connected with : NaN
molecule tags Virus
source organism Human rhinovirus 14
publication title Structural analysis of antiviral agents that interact with the capsid of human rhinoviruses.
pubmed doi rcsb
molecule keywords HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1)
total genus 2
structure length 40
sequence length 40
ec nomenclature ec 2.7.7.48: RNA-directed RNA polymerase.
pdb deposition date 1988-10-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
4 PF02226 Pico_P1A Picornavirus coat protein (VP4)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.80.10 Few Secondary Structures Irregular Rhinovirus 14, subunit 4 Picornavirus coat protein VP4 2rm2400
1BEV4 1COV4 4RHV4 4Q4X4 1VBC4 1HRI4 1K5MD 1NA1D 2R044 1PO24 1MQTD 1PVC4 1HXS4 4Q4V4 2PLV4 1RUC4 1R084 1VBD4 2R074 2RS14 2HWC4 4Q4Y4 2RR14 1HRV4 1AR64 1VBA4 1EV14 1EAH4 1ASJ4 1AR74 2RS34 2RMU4 1RUI4 2R064 3JBG4 1RUE4 3JD74 1NCQD 1AR84 1RUH4 1RVF4 2RS54 4Q4W4 4PDWD 1PIV4 2X5ID 1RUF4 1VBE4 1RMU4 1VBB4 1AR94 1PO14 1AL24 1OOPD 1RUG4 1D4M4 1POV0 4GB34 1RUD4 1H8TD 1RUJ4 1Z7S4 2HWB4 1VRH4 1R094 2RM24 1RHI4 3J8F4
chains in the Genus database with same CATH superfamily
1BEV4 1COV4 1HRI4 1NA1D 1XI1A 3P4QA 2PZSA 4Q4V4 2RS14 2HWC4 1NENA 1VBA4 2PYJA 2B76A 1AR74 2RS34 2RMU4 1AR84 3AEAA 1RUF4 1VBE4 1PO14 4YSXA 1D4M4 1POV0 3AE8A 3AE9A 3AE5A 1Z7S4 1RHI4 3SFDA 1KF6A 4YT0A 3ABVA 4Q4X4 1VBC4 3GQHA 1PO24 1MQTD 3FI7A 1ZP0A 3AEFA 1RUC4 3SUCA 2R074 3VRAA 1EV14 1EAH4 3P4RA 1RUI4 3JBG4 1NCQD 1RUH4 4Q4W4 4PDWD 5C3JA 1RMU4 1XHXA 2H88A 1ZOYA 1H8TD 1RUJ4 2WDQA 1VRH4 2PYLA 3GQKA 3AE7A 1L0VA 2R044 3VR8A 1PVC4 1NEKA 3CIRA 1HXS4 1R084 1VBD4 3AE1A 3VR9A 2WDVA 4Q4Y4 2RR14 3AE3A 1HRV4 1AR64 2WDRA 3AEGA 4KX6A 1YQ3A 1RUE4 4YSYA 2H89A 1KFYA 4YTPA 3P4PA 4YTNA 1AR94 2FBWA 2WS3A 1AL24 1RUG4 1RUD4 1YQ4A 2R7FA 1R094 1XHZA 3AEBA 4RHV4 1K5MD 2ACZA 2PLV4 3AE4A 2WP9A 3SFEA 3AEDA 4YXDA 1ASJ4 2WU2A 2EX3A 3AECA 2R064 3JD74 2PW9A 3AE2A 1RVF4 2RS54 4YSZA 1PIV4 2X5ID 3AEEA 3VRBA 4YTMA 1VBB4 3AE6A 1OOPD 3P4SA 2WU5A 4GB34 2WQYA 5C2TA 2PY5A 2HWB4 2RM24 3J8F4
chains in the Genus database with same CATH topology
1BEV4 1COV4 4RHV4 4Q4X4 1VBC4 1HRI4 1K5MD 1NA1D 2R044 1PO24 1MQTD 1PVC4 1HXS4 4Q4V4 2PLV4 1RUC4 1R084 1VBD4 2R074 2RS14 2HWC4 4Q4Y4 2RR14 1HRV4 1AR64 1VBA4 1EV14 1EAH4 1ASJ4 1AR74 2RS34 2RMU4 1RUI4 2R064 3JBG4 1RUE4 3JD74 1NCQD 1AR84 1RUH4 1RVF4 2RS54 4Q4W4 4PDWD 1PIV4 2X5ID 1RUF4 1VBE4 1RMU4 1VBB4 1AR94 1PO14 1AL24 1OOPD 1RUG4 1D4M4 1POV0 4GB34 1RUD4 1H8TD 1RUJ4 1Z7S4 2HWB4 1VRH4 1R094 2RM24 1RHI4 3J8F4
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1BEV 4;  1COV 4;  4RHV 4;  4Q4X 4;  1VBC 4;  1HRI 4;  1K5M D;  1NA1 D;  2R04 4;  1PO2 4;  1MQT D;  1PVC 4;  1HXS 4;  4Q4V 4;  2PLV 4;  1RUC 4;  1R08 4;  1VBD 4;  2R07 4;  2RS1 4;  2HWC 4;  4Q4Y 4;  2RR1 4;  1HRV 4;  1AR6 4;  1VBA 4;  1EV1 4;  1EAH 4;  1ASJ 4;  1AR7 4;  2RS3 4;  2RMU 4;  1RUI 4;  2R06 4;  3JBG 4;  1RUE 4;  3JD7 4;  1NCQ D;  1AR8 4;  1RUH 4;  1RVF 4;  2RS5 4;  4Q4W 4;  4PDW D;  1PIV 4;  2X5I D;  1RUF 4;  1VBE 4;  1RMU 4;  1VBB 4;  1AR9 4;  1PO1 4;  1AL2 4;  1OOP D;  1RUG 4;  1D4M 4;  1POV 0;  4GB3 4;  1RUD 4;  1H8T D;  1RUJ 4;  1Z7S 4;  2HWB 4;  1VRH 4;  1R09 4;  2RM2 4;  1RHI 4;  3J8F 4; 
#chains in the Genus database with same CATH topology
 1BEV 4;  1COV 4;  1HRI 4;  1NA1 D;  1XI1 A;  3P4Q A;  2PZS A;  4Q4V 4;  2RS1 4;  2HWC 4;  1NEN A;  1VBA 4;  2PYJ A;  2B76 A;  1AR7 4;  2RS3 4;  2RMU 4;  1AR8 4;  3AEA A;  1RUF 4;  1VBE 4;  1PO1 4;  4YSX A;  1D4M 4;  1POV 0;  3AE8 A;  3AE9 A;  3AE5 A;  1Z7S 4;  1RHI 4;  3SFD A;  1KF6 A;  4YT0 A;  3ABV A;  4Q4X 4;  1VBC 4;  3GQH A;  1PO2 4;  1MQT D;  3FI7 A;  1ZP0 A;  3AEF A;  1RUC 4;  3SUC A;  2R07 4;  3VRA A;  1EV1 4;  1EAH 4;  3P4R A;  1RUI 4;  3JBG 4;  1NCQ D;  1RUH 4;  4Q4W 4;  4PDW D;  5C3J A;  1RMU 4;  1XHX A;  2H88 A;  1ZOY A;  1H8T D;  1RUJ 4;  2WDQ A;  1VRH 4;  2PYL A;  3GQK A;  3AE7 A;  1L0V A;  2R04 4;  3VR8 A;  1PVC 4;  1NEK A;  3CIR A;  1HXS 4;  1R08 4;  1VBD 4;  3AE1 A;  3VR9 A;  2WDV A;  4Q4Y 4;  2RR1 4;  3AE3 A;  1HRV 4;  1AR6 4;  2WDR A;  3AEG A;  4KX6 A;  1YQ3 A;  1RUE 4;  4YSY A;  2H89 A;  1KFY A;  4YTP A;  3P4P A;  4YTN A;  1AR9 4;  2FBW A;  2WS3 A;  1AL2 4;  1RUG 4;  1RUD 4;  1YQ4 A;  2R7F A;  1R09 4;  1XHZ A;  3AEB A;  4RHV 4;  1K5M D;  2ACZ A;  2PLV 4;  3AE4 A;  2WP9 A;  3SFE A;  3AED A;  4YXD A;  1ASJ 4;  2WU2 A;  2EX3 A;  3AEC A;  2R06 4;  3JD7 4;  2PW9 A;  3AE2 A;  1RVF 4;  2RS5 4;  4YSZ A;  1PIV 4;  2X5I D;  3AEE A;  3VRB A;  4YTM A;  1VBB 4;  3AE6 A;  1OOP D;  3P4S A;  2WU5 A;  4GB3 4;  2WQY A;  5C2T A;  2PY5 A;  2HWB 4;  2RM2 4;  3J8F 4; 
#chains in the Genus database with same CATH homology
 1BEV 4;  1COV 4;  4RHV 4;  4Q4X 4;  1VBC 4;  1HRI 4;  1K5M D;  1NA1 D;  2R04 4;  1PO2 4;  1MQT D;  1PVC 4;  1HXS 4;  4Q4V 4;  2PLV 4;  1RUC 4;  1R08 4;  1VBD 4;  2R07 4;  2RS1 4;  2HWC 4;  4Q4Y 4;  2RR1 4;  1HRV 4;  1AR6 4;  1VBA 4;  1EV1 4;  1EAH 4;  1ASJ 4;  1AR7 4;  2RS3 4;  2RMU 4;  1RUI 4;  2R06 4;  3JBG 4;  1RUE 4;  3JD7 4;  1NCQ D;  1AR8 4;  1RUH 4;  1RVF 4;  2RS5 4;  4Q4W 4;  4PDW D;  1PIV 4;  2X5I D;  1RUF 4;  1VBE 4;  1RMU 4;  1VBB 4;  1AR9 4;  1PO1 4;  1AL2 4;  1OOP D;  1RUG 4;  1D4M 4;  1POV 0;  4GB3 4;  1RUD 4;  1H8T D;  1RUJ 4;  1Z7S 4;  2HWB 4;  1VRH 4;  1R09 4;  2RM2 4;  1RHI 4;  3J8F 4; 
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similar chains in the pdb database (?% sequence similarity)

 
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