2RMU4

Three-dimensional structures of drug-resistant mutants of human rhinovirus 14
Total Genus 2

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
2
sequence length
40
structure length
40
Chain Sequence
INYYKDAASTSSAGQSLSMDPSKFTEPVKDLMLKGAPALN

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
3H1 (35-37)EMPTYUpdating...
connected with : NaN
molecule tags Virus
source organism Human rhinovirus 14
publication title Three-dimensional structures of drug-resistant mutants of human rhinovirus 14.
pubmed doi rcsb
molecule keywords HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1)
total genus 2
structure length 40
sequence length 40
ec nomenclature ec 2.7.7.48: RNA-directed RNA polymerase.
pdb deposition date 1988-10-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
4 PF02226 Pico_P1A Picornavirus coat protein (VP4)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.80.10 Few Secondary Structures Irregular Rhinovirus 14, subunit 4 Picornavirus coat protein VP4 2rmu400
1AR74 1HXS4 1RHI4 1COV4 2RR14 2R074 4GB34 1PIV4 1EAH4 1K5MD 4RHV4 1RUG4 4PDWD 1VBC4 1Z7S4 2X5ID 1R094 1RUF4 2RMU4 4Q4W4 1RUH4 1HRV4 1AL24 1D4M4 1PO14 1AR94 1RUD4 1EV14 1POV0 1AR64 1RUE4 1VBD4 1VBE4 2PLV4 1OOPD 1R084 1H8TD 1VBB4 1RUJ4 3JD74 3JBG4 2RM24 1RUC4 1ASJ4 2RS14 2RS34 1MQTD 1PO24 1PVC4 1RVF4 1VBA4 2HWC4 2HWB4 2RS54 2R064 2R044 4Q4X4 4Q4Y4 1NCQD 3J8F4 1RUI4 1AR84 4Q4V4 1VRH4 1RMU4 1NA1D 1HRI4 1BEV4
chains in the Genus database with same CATH superfamily
1XHZA 1HXS4 2R7FA 2RR14 4GB34 1EAH4 2WDVA 3AE4A 3AEDA 4RHV4 1KF6A 3P4QA 1Z7S4 1RUF4 3P4PA 4Q4W4 4YSXA 1RUH4 2H88A 3AE3A 1RUD4 3AEBA 3SUCA 1VBE4 2WU2A 3AE1A 3VR8A 2PW9A 5C2TA 1YQ3A 2WQYA 1ZOYA 1PO24 1PVC4 2PZSA 2R044 2EX3A 4YTMA 3VRBA 4YTPA 4YTNA 1RVF4 3FI7A 2WDRA 1NENA 3AE8A 1RHI4 1COV4 1VBC4 1L0VA 2B76A 2RMU4 1HRV4 4YXDA 5C3JA 3VRAA 1D4M4 3ABVA 1AR94 1EV14 1H8TD 2WP9A 3JBG4 1RUC4 3AE9A 2RS34 1MQTD 2H89A 2HWB4 2R064 4Q4X4 4Q4Y4 1KFYA 1RUI4 1AR84 4Q4V4 1XHXA 2WS3A 3P4RA 3SFEA 1NEKA 1AR74 3GQKA 1XI1A 1PIV4 1K5MD 1RUG4 2X5ID 2PY5A 1AL24 3AE7A 2WDQA 1PO14 3AEEA 3VR9A 1AR64 1VBD4 1VBB4 1RUJ4 3JD74 2RM24 1ASJ4 2RS14 1VBA4 3CIRA 3AEAA 3P4SA 4YSZA 1NCQD 2WU5A 3J8F4 1VRH4 3SFDA 3GQHA 2FBWA 1OOPD 1HRI4 1BEV4 3AECA 1YQ4A 2PYLA 1ZP0A 2R074 3AE6A 2ACZA 4PDWD 4KX6A 1R094 4YT0A 3AEGA 1POV0 1RUE4 2PLV4 1R084 3AEFA 4YSYA 2HWC4 2RS54 3AE2A 1RMU4 1NA1D 2PYJA 3AE5A
chains in the Genus database with same CATH topology
1AR74 1HXS4 1RHI4 1COV4 2RR14 2R074 4GB34 1PIV4 1EAH4 1K5MD 4RHV4 1RUG4 4PDWD 1VBC4 1Z7S4 2X5ID 1R094 1RUF4 2RMU4 4Q4W4 1RUH4 1HRV4 1AL24 1D4M4 1PO14 1AR94 1RUD4 1EV14 1POV0 1AR64 1RUE4 1VBD4 1VBE4 2PLV4 1OOPD 1R084 1H8TD 1VBB4 1RUJ4 3JD74 3JBG4 2RM24 1RUC4 1ASJ4 2RS14 2RS34 1MQTD 1PO24 1PVC4 1RVF4 1VBA4 2HWC4 2HWB4 2RS54 2R064 2R044 4Q4X4 4Q4Y4 1NCQD 3J8F4 1RUI4 1AR84 4Q4V4 1VRH4 1RMU4 1NA1D 1HRI4 1BEV4
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1AR7 4;  1HXS 4;  1RHI 4;  1COV 4;  2RR1 4;  2R07 4;  4GB3 4;  1PIV 4;  1EAH 4;  1K5M D;  4RHV 4;  1RUG 4;  4PDW D;  1VBC 4;  1Z7S 4;  2X5I D;  1R09 4;  1RUF 4;  2RMU 4;  4Q4W 4;  1RUH 4;  1HRV 4;  1AL2 4;  1D4M 4;  1PO1 4;  1AR9 4;  1RUD 4;  1EV1 4;  1POV 0;  1AR6 4;  1RUE 4;  1VBD 4;  1VBE 4;  2PLV 4;  1OOP D;  1R08 4;  1H8T D;  1VBB 4;  1RUJ 4;  3JD7 4;  3JBG 4;  2RM2 4;  1RUC 4;  1ASJ 4;  2RS1 4;  2RS3 4;  1MQT D;  1PO2 4;  1PVC 4;  1RVF 4;  1VBA 4;  2HWC 4;  2HWB 4;  2RS5 4;  2R06 4;  2R04 4;  4Q4X 4;  4Q4Y 4;  1NCQ D;  3J8F 4;  1RUI 4;  1AR8 4;  4Q4V 4;  1VRH 4;  1RMU 4;  1NA1 D;  1HRI 4;  1BEV 4; 
#chains in the Genus database with same CATH topology
 1XHZ A;  1HXS 4;  2R7F A;  2RR1 4;  4GB3 4;  1EAH 4;  2WDV A;  3AE4 A;  3AED A;  4RHV 4;  1KF6 A;  3P4Q A;  1Z7S 4;  1RUF 4;  3P4P A;  4Q4W 4;  4YSX A;  1RUH 4;  2H88 A;  3AE3 A;  1RUD 4;  3AEB A;  3SUC A;  1VBE 4;  2WU2 A;  3AE1 A;  3VR8 A;  2PW9 A;  5C2T A;  1YQ3 A;  2WQY A;  1ZOY A;  1PO2 4;  1PVC 4;  2PZS A;  2R04 4;  2EX3 A;  4YTM A;  3VRB A;  4YTP A;  4YTN A;  1RVF 4;  3FI7 A;  2WDR A;  1NEN A;  3AE8 A;  1RHI 4;  1COV 4;  1VBC 4;  1L0V A;  2B76 A;  2RMU 4;  1HRV 4;  4YXD A;  5C3J A;  3VRA A;  1D4M 4;  3ABV A;  1AR9 4;  1EV1 4;  1H8T D;  2WP9 A;  3JBG 4;  1RUC 4;  3AE9 A;  2RS3 4;  1MQT D;  2H89 A;  2HWB 4;  2R06 4;  4Q4X 4;  4Q4Y 4;  1KFY A;  1RUI 4;  1AR8 4;  4Q4V 4;  1XHX A;  2WS3 A;  3P4R A;  3SFE A;  1NEK A;  1AR7 4;  3GQK A;  1XI1 A;  1PIV 4;  1K5M D;  1RUG 4;  2X5I D;  2PY5 A;  1AL2 4;  3AE7 A;  2WDQ A;  1PO1 4;  3AEE A;  3VR9 A;  1AR6 4;  1VBD 4;  1VBB 4;  1RUJ 4;  3JD7 4;  2RM2 4;  1ASJ 4;  2RS1 4;  1VBA 4;  3CIR A;  3AEA A;  3P4S A;  4YSZ A;  1NCQ D;  2WU5 A;  3J8F 4;  1VRH 4;  3SFD A;  3GQH A;  2FBW A;  1OOP D;  1HRI 4;  1BEV 4;  3AEC A;  1YQ4 A;  2PYL A;  1ZP0 A;  2R07 4;  3AE6 A;  2ACZ A;  4PDW D;  4KX6 A;  1R09 4;  4YT0 A;  3AEG A;  1POV 0;  1RUE 4;  2PLV 4;  1R08 4;  3AEF A;  4YSY A;  2HWC 4;  2RS5 4;  3AE2 A;  1RMU 4;  1NA1 D;  2PYJ A;  3AE5 A; 
#chains in the Genus database with same CATH homology
 1AR7 4;  1HXS 4;  1RHI 4;  1COV 4;  2RR1 4;  2R07 4;  4GB3 4;  1PIV 4;  1EAH 4;  1K5M D;  4RHV 4;  1RUG 4;  4PDW D;  1VBC 4;  1Z7S 4;  2X5I D;  1R09 4;  1RUF 4;  2RMU 4;  4Q4W 4;  1RUH 4;  1HRV 4;  1AL2 4;  1D4M 4;  1PO1 4;  1AR9 4;  1RUD 4;  1EV1 4;  1POV 0;  1AR6 4;  1RUE 4;  1VBD 4;  1VBE 4;  2PLV 4;  1OOP D;  1R08 4;  1H8T D;  1VBB 4;  1RUJ 4;  3JD7 4;  3JBG 4;  2RM2 4;  1RUC 4;  1ASJ 4;  2RS1 4;  2RS3 4;  1MQT D;  1PO2 4;  1PVC 4;  1RVF 4;  1VBA 4;  2HWC 4;  2HWB 4;  2RS5 4;  2R06 4;  2R04 4;  4Q4X 4;  4Q4Y 4;  1NCQ D;  3J8F 4;  1RUI 4;  1AR8 4;  4Q4V 4;  1VRH 4;  1RMU 4;  1NA1 D;  1HRI 4;  1BEV 4; 
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similar chains in the pdb database (?% sequence similarity)

 
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