2RS34

Structural analysis of antiviral agents that interact with the capsid of human rhinoviruses
Total Genus 2

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
2
sequence length
40
structure length
40
Chain Sequence
INYYKDAASTSSAGQSLSMDPSKFTEPVKDLMLKGAPALN

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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connected with : NaN
molecule tags Virus
source organism Human rhinovirus 14
publication title Structural analysis of antiviral agents that interact with the capsid of human rhinoviruses.
pubmed doi rcsb
molecule keywords HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1)
total genus 2
structure length 40
sequence length 40
ec nomenclature ec 2.7.7.48: RNA-directed RNA polymerase.
pdb deposition date 1988-10-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
4 PF02226 Pico_P1A Picornavirus coat protein (VP4)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.80.10 Few Secondary Structures Irregular Rhinovirus 14, subunit 4 Picornavirus coat protein VP4 2rs3400
1POV0 2RR14 1HXS4 1ASJ4 1AR74 1HRI4 1VBC4 1R084 1OOPD 1NCQD 1R094 1VBE4 1AL24 4RHV4 1EAH4 1COV4 1RUF4 2HWC4 1RUH4 2R074 1PO14 1Z7S4 2HWB4 1AR64 1D4M4 1RMU4 2RMU4 2RS34 3JD74 4Q4W4 1RUI4 1RHI4 2R064 1BEV4 1K5MD 4PDWD 1PO24 3JBG4 1RUD4 4GB34 1RUJ4 1AR84 1RUG4 2RS54 1NA1D 1PVC4 2X5ID 1VBD4 1AR94 1MQTD 1VRH4 4Q4X4 1RUE4 2RS14 4Q4V4 1EV14 1VBA4 1H8TD 2PLV4 1RUC4 2RM24 1HRV4 4Q4Y4 2R044 1VBB4 1RVF4 3J8F4 1PIV4
chains in the Genus database with same CATH superfamily
3AE4A 1ASJ4 1AR74 1HRI4 4YSZA 1VBE4 2H89A 2HWC4 3GQHA 3FI7A 3JD74 2RMU4 2WU5A 2WDVA 2FBWA 3AEDA 2PY5A 3CIRA 4YTPA 1PVC4 1NEKA 4YTNA 1RUE4 1EV14 2B76A 1RUC4 2RM24 4Q4Y4 3AE9A 3SFDA 3J8F4 3VRAA 3P4SA 2WP9A 1POV0 1HXS4 1R084 1YQ3A 2WS3A 3P4QA 1EAH4 1ZOYA 1RUF4 4YXDA 3ABVA 1AR64 1D4M4 4YSYA 3VRBA 1RHI4 3AE1A 3AECA 3GQKA 4PDWD 3VR9A 1RUD4 1XHXA 1KF6A 3AE6A 3AEFA 4YSXA 1AR94 1VRH4 2RS14 3AE5A 1VBA4 4Q4V4 1H8TD 2PLV4 2PYLA 3P4RA 1VBB4 2ACZA 1PIV4 3AEBA 4GB34 1R094 1AL24 4RHV4 1RUH4 2R074 1PO14 1Z7S4 2HWB4 2R7FA 1NENA 4Q4W4 3SUCA 2R064 3AE3A 1BEV4 1K5MD 3JBG4 2PYJA 1RUJ4 1AR84 1RUG4 3AE8A 2X5ID 1VBD4 4Q4X4 2WDRA 1KFYA 1HRV4 2R044 1XI1A 1RVF4 5C2TA 2RR14 1VBC4 4YTMA 2WDQA 1OOPD 1NCQD 3VR8A 2PZSA 1XHZA 3P4PA 1COV4 2H88A 5C3JA 2EX3A 2PW9A 3AEGA 2WQYA 1ZP0A 1RMU4 4KX6A 2RS34 3AEEA 3AE7A 1RUI4 1PO24 4YT0A 1L0VA 2RS54 1NA1D 3AEAA 1MQTD 3AE2A 2WU2A 3SFEA 1YQ4A
chains in the Genus database with same CATH topology
1POV0 2RR14 1HXS4 1ASJ4 1AR74 1HRI4 1VBC4 1R084 1OOPD 1NCQD 1R094 1VBE4 1AL24 4RHV4 1EAH4 1COV4 1RUF4 2HWC4 1RUH4 2R074 1PO14 1Z7S4 2HWB4 1AR64 1D4M4 1RMU4 2RMU4 2RS34 3JD74 4Q4W4 1RUI4 1RHI4 2R064 1BEV4 1K5MD 4PDWD 1PO24 3JBG4 1RUD4 4GB34 1RUJ4 1AR84 1RUG4 2RS54 1NA1D 1PVC4 2X5ID 1VBD4 1AR94 1MQTD 1VRH4 4Q4X4 1RUE4 2RS14 4Q4V4 1EV14 1VBA4 1H8TD 2PLV4 1RUC4 2RM24 1HRV4 4Q4Y4 2R044 1VBB4 1RVF4 3J8F4 1PIV4
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1POV 0;  2RR1 4;  1HXS 4;  1ASJ 4;  1AR7 4;  1HRI 4;  1VBC 4;  1R08 4;  1OOP D;  1NCQ D;  1R09 4;  1VBE 4;  1AL2 4;  4RHV 4;  1EAH 4;  1COV 4;  1RUF 4;  2HWC 4;  1RUH 4;  2R07 4;  1PO1 4;  1Z7S 4;  2HWB 4;  1AR6 4;  1D4M 4;  1RMU 4;  2RMU 4;  2RS3 4;  3JD7 4;  4Q4W 4;  1RUI 4;  1RHI 4;  2R06 4;  1BEV 4;  1K5M D;  4PDW D;  1PO2 4;  3JBG 4;  1RUD 4;  4GB3 4;  1RUJ 4;  1AR8 4;  1RUG 4;  2RS5 4;  1NA1 D;  1PVC 4;  2X5I D;  1VBD 4;  1AR9 4;  1MQT D;  1VRH 4;  4Q4X 4;  1RUE 4;  2RS1 4;  4Q4V 4;  1EV1 4;  1VBA 4;  1H8T D;  2PLV 4;  1RUC 4;  2RM2 4;  1HRV 4;  4Q4Y 4;  2R04 4;  1VBB 4;  1RVF 4;  3J8F 4;  1PIV 4; 
#chains in the Genus database with same CATH topology
 3AE4 A;  1ASJ 4;  1AR7 4;  1HRI 4;  4YSZ A;  1VBE 4;  2H89 A;  2HWC 4;  3GQH A;  3FI7 A;  3JD7 4;  2RMU 4;  2WU5 A;  2WDV A;  2FBW A;  3AED A;  2PY5 A;  3CIR A;  4YTP A;  1PVC 4;  1NEK A;  4YTN A;  1RUE 4;  1EV1 4;  2B76 A;  1RUC 4;  2RM2 4;  4Q4Y 4;  3AE9 A;  3SFD A;  3J8F 4;  3VRA A;  3P4S A;  2WP9 A;  1POV 0;  1HXS 4;  1R08 4;  1YQ3 A;  2WS3 A;  3P4Q A;  1EAH 4;  1ZOY A;  1RUF 4;  4YXD A;  3ABV A;  1AR6 4;  1D4M 4;  4YSY A;  3VRB A;  1RHI 4;  3AE1 A;  3AEC A;  3GQK A;  4PDW D;  3VR9 A;  1RUD 4;  1XHX A;  1KF6 A;  3AE6 A;  3AEF A;  4YSX A;  1AR9 4;  1VRH 4;  2RS1 4;  3AE5 A;  1VBA 4;  4Q4V 4;  1H8T D;  2PLV 4;  2PYL A;  3P4R A;  1VBB 4;  2ACZ A;  1PIV 4;  3AEB A;  4GB3 4;  1R09 4;  1AL2 4;  4RHV 4;  1RUH 4;  2R07 4;  1PO1 4;  1Z7S 4;  2HWB 4;  2R7F A;  1NEN A;  4Q4W 4;  3SUC A;  2R06 4;  3AE3 A;  1BEV 4;  1K5M D;  3JBG 4;  2PYJ A;  1RUJ 4;  1AR8 4;  1RUG 4;  3AE8 A;  2X5I D;  1VBD 4;  4Q4X 4;  2WDR A;  1KFY A;  1HRV 4;  2R04 4;  1XI1 A;  1RVF 4;  5C2T A;  2RR1 4;  1VBC 4;  4YTM A;  2WDQ A;  1OOP D;  1NCQ D;  3VR8 A;  2PZS A;  1XHZ A;  3P4P A;  1COV 4;  2H88 A;  5C3J A;  2EX3 A;  2PW9 A;  3AEG A;  2WQY A;  1ZP0 A;  1RMU 4;  4KX6 A;  2RS3 4;  3AEE A;  3AE7 A;  1RUI 4;  1PO2 4;  4YT0 A;  1L0V A;  2RS5 4;  1NA1 D;  3AEA A;  1MQT D;  3AE2 A;  2WU2 A;  3SFE A;  1YQ4 A; 
#chains in the Genus database with same CATH homology
 1POV 0;  2RR1 4;  1HXS 4;  1ASJ 4;  1AR7 4;  1HRI 4;  1VBC 4;  1R08 4;  1OOP D;  1NCQ D;  1R09 4;  1VBE 4;  1AL2 4;  4RHV 4;  1EAH 4;  1COV 4;  1RUF 4;  2HWC 4;  1RUH 4;  2R07 4;  1PO1 4;  1Z7S 4;  2HWB 4;  1AR6 4;  1D4M 4;  1RMU 4;  2RMU 4;  2RS3 4;  3JD7 4;  4Q4W 4;  1RUI 4;  1RHI 4;  2R06 4;  1BEV 4;  1K5M D;  4PDW D;  1PO2 4;  3JBG 4;  1RUD 4;  4GB3 4;  1RUJ 4;  1AR8 4;  1RUG 4;  2RS5 4;  1NA1 D;  1PVC 4;  2X5I D;  1VBD 4;  1AR9 4;  1MQT D;  1VRH 4;  4Q4X 4;  1RUE 4;  2RS1 4;  4Q4V 4;  1EV1 4;  1VBA 4;  1H8T D;  2PLV 4;  1RUC 4;  2RM2 4;  1HRV 4;  4Q4Y 4;  2R04 4;  1VBB 4;  1RVF 4;  3J8F 4;  1PIV 4; 
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