2RS54

Structural analysis of antiviral agents that interact with the capsid of human rhinoviruses
Total Genus 2
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
2
sequence length
40
structure length
40
Chain Sequence
INYYKDAASTSSAGQSLSMDPSKFTEPVKDLMLKGAPALN
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Structural analysis of antiviral agents that interact with the capsid of human rhinoviruses.
pubmed doi rcsb
molecule tags Virus
source organism Human rhinovirus 14
molecule keywords HUMAN RHINOVIRUS 14 COAT PROTEIN (SUBUNIT VP1)
total genus 2
structure length 40
sequence length 40
ec nomenclature ec 2.7.7.48: RNA-directed RNA polymerase.
pdb deposition date 1988-10-03

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
4 PF02226 Pico_P1A Picornavirus coat protein (VP4)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.80.10 Few Secondary Structures Irregular Rhinovirus 14, subunit 4 Picornavirus coat protein VP4 2rs5400
1PO24 1VBD4 1VRH4 2RMU4 4Q4Y4 1PIV4 1HRI4 1OOPD 1VBB4 1PO14 2RS34 1K5MD 1MQTD 1VBE4 1RUI4 2RR14 1COV4 1AR64 1RUJ4 1Z7S4 1H8TD 1RMU4 2R074 2X5ID 1PVC4 2HWC4 1NA1D 4RHV4 2RS14 1BEV4 1RUC4 4Q4W4 4GB34 2R064 1AR94 1NCQD 1R084 1AR84 1POV0 1EAH4 1VBA4 1HXS4 3JD74 1ASJ4 1RUG4 1EV14 1RUD4 1RUF4 2PLV4 2HWB4 4Q4X4 1VBC4 1AR74 1R094 4Q4V4 1D4M4 2R044 1RHI4 3J8F4 4PDWD 1RUE4 1HRV4 2RM24 2RS54 1RUH4 1AL24 1RVF4 3JBG4
chains in the Genus database with same CATH superfamily
3AEFA 2RMU4 2ACZA 1XI1A 1OOPD 1KF6A 1XHXA 2RS34 1K5MD 1VBE4 3CIRA 1RUI4 1COV4 1RUJ4 3VRBA 1RMU4 2PYLA 2R074 2X5ID 3SFDA 2RS14 1BEV4 3AE6A 3AE4A 4GB34 2R064 1AR94 3GQHA 2PYJA 1AR84 1EAH4 2PLV4 2HWB4 2WP9A 3P4SA 2R044 3P4QA 4PDWD 4YTPA 5C2TA 1RUE4 2HWC4 1KFYA 5C3JA 1PO24 1VBD4 3AEDA 3ABVA 1ZP0A 1YQ3A 3AE2A 1NEKA 1PIV4 3AE8A 3AE9A 1MQTD 3P4RA 2WDVA 2H88A 4YTMA 1H8TD 3AEGA 1RUC4 1YQ4A 4Q4W4 2PZSA 4YTNA 1NCQD 1HXS4 1RUG4 1EV14 1RUD4 2H89A 2EX3A 1AR74 1R094 3J8F4 4KX6A 2B76A 4YSXA 3JBG4 3VR8A 3P4PA 1VRH4 1PO14 2RR14 1AR64 1PVC4 4RHV4 2WS3A 4YSZA 2WU2A 1VBA4 3AE3A 3AE1A 1NENA 1ASJ4 1RUF4 3VR9A 4Q4X4 4Q4V4 2WDRA 1D4M4 1RHI4 3GQKA 3AEAA 2RM24 3AECA 4YXDA 2RS54 1RVF4 4Q4Y4 3AEBA 1HRI4 1VBB4 2WDQA 1ZOYA 3SUCA 3AE5A 3SFEA 4YSYA 1Z7S4 1XHZA 1NA1D 3FI7A 2R7FA 3VRAA 1R084 2PW9A 3AE7A 1POV0 3JD74 2WU5A 3AEEA 2PY5A 1VBC4 2FBWA 1L0VA 2WQYA 1HRV4 1RUH4 4YT0A 1AL24
chains in the Genus database with same CATH topology
1PO24 1VBD4 1VRH4 2RMU4 4Q4Y4 1PIV4 1HRI4 1OOPD 1VBB4 1PO14 2RS34 1K5MD 1MQTD 1VBE4 1RUI4 2RR14 1COV4 1AR64 1RUJ4 1Z7S4 1H8TD 1RMU4 2R074 2X5ID 1PVC4 2HWC4 1NA1D 4RHV4 2RS14 1BEV4 1RUC4 4Q4W4 4GB34 2R064 1AR94 1NCQD 1R084 1AR84 1POV0 1EAH4 1VBA4 1HXS4 3JD74 1ASJ4 1RUG4 1EV14 1RUD4 1RUF4 2PLV4 2HWB4 4Q4X4 1VBC4 1AR74 1R094 4Q4V4 1D4M4 2R044 1RHI4 3J8F4 4PDWD 1RUE4 1HRV4 2RM24 2RS54 1RUH4 1AL24 1RVF4 3JBG4
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1PO2 4;  1VBD 4;  1VRH 4;  2RMU 4;  4Q4Y 4;  1PIV 4;  1HRI 4;  1OOP D;  1VBB 4;  1PO1 4;  2RS3 4;  1K5M D;  1MQT D;  1VBE 4;  1RUI 4;  2RR1 4;  1COV 4;  1AR6 4;  1RUJ 4;  1Z7S 4;  1H8T D;  1RMU 4;  2R07 4;  2X5I D;  1PVC 4;  2HWC 4;  1NA1 D;  4RHV 4;  2RS1 4;  1BEV 4;  1RUC 4;  4Q4W 4;  4GB3 4;  2R06 4;  1AR9 4;  1NCQ D;  1R08 4;  1AR8 4;  1POV 0;  1EAH 4;  1VBA 4;  1HXS 4;  3JD7 4;  1ASJ 4;  1RUG 4;  1EV1 4;  1RUD 4;  1RUF 4;  2PLV 4;  2HWB 4;  4Q4X 4;  1VBC 4;  1AR7 4;  1R09 4;  4Q4V 4;  1D4M 4;  2R04 4;  1RHI 4;  3J8F 4;  4PDW D;  1RUE 4;  1HRV 4;  2RM2 4;  2RS5 4;  1RUH 4;  1AL2 4;  1RVF 4;  3JBG 4; 
#chains in the Genus database with same CATH topology
 3AEF A;  2RMU 4;  2ACZ A;  1XI1 A;  1OOP D;  1KF6 A;  1XHX A;  2RS3 4;  1K5M D;  1VBE 4;  3CIR A;  1RUI 4;  1COV 4;  1RUJ 4;  3VRB A;  1RMU 4;  2PYL A;  2R07 4;  2X5I D;  3SFD A;  2RS1 4;  1BEV 4;  3AE6 A;  3AE4 A;  4GB3 4;  2R06 4;  1AR9 4;  3GQH A;  2PYJ A;  1AR8 4;  1EAH 4;  2PLV 4;  2HWB 4;  2WP9 A;  3P4S A;  2R04 4;  3P4Q A;  4PDW D;  4YTP A;  5C2T A;  1RUE 4;  2HWC 4;  1KFY A;  5C3J A;  1PO2 4;  1VBD 4;  3AED A;  3ABV A;  1ZP0 A;  1YQ3 A;  3AE2 A;  1NEK A;  1PIV 4;  3AE8 A;  3AE9 A;  1MQT D;  3P4R A;  2WDV A;  2H88 A;  4YTM A;  1H8T D;  3AEG A;  1RUC 4;  1YQ4 A;  4Q4W 4;  2PZS A;  4YTN A;  1NCQ D;  1HXS 4;  1RUG 4;  1EV1 4;  1RUD 4;  2H89 A;  2EX3 A;  1AR7 4;  1R09 4;  3J8F 4;  4KX6 A;  2B76 A;  4YSX A;  3JBG 4;  3VR8 A;  3P4P A;  1VRH 4;  1PO1 4;  2RR1 4;  1AR6 4;  1PVC 4;  4RHV 4;  2WS3 A;  4YSZ A;  2WU2 A;  1VBA 4;  3AE3 A;  3AE1 A;  1NEN A;  1ASJ 4;  1RUF 4;  3VR9 A;  4Q4X 4;  4Q4V 4;  2WDR A;  1D4M 4;  1RHI 4;  3GQK A;  3AEA A;  2RM2 4;  3AEC A;  4YXD A;  2RS5 4;  1RVF 4;  4Q4Y 4;  3AEB A;  1HRI 4;  1VBB 4;  2WDQ A;  1ZOY A;  3SUC A;  3AE5 A;  3SFE A;  4YSY A;  1Z7S 4;  1XHZ A;  1NA1 D;  3FI7 A;  2R7F A;  3VRA A;  1R08 4;  2PW9 A;  3AE7 A;  1POV 0;  3JD7 4;  2WU5 A;  3AEE A;  2PY5 A;  1VBC 4;  2FBW A;  1L0V A;  2WQY A;  1HRV 4;  1RUH 4;  4YT0 A;  1AL2 4; 
#chains in the Genus database with same CATH homology
 1PO2 4;  1VBD 4;  1VRH 4;  2RMU 4;  4Q4Y 4;  1PIV 4;  1HRI 4;  1OOP D;  1VBB 4;  1PO1 4;  2RS3 4;  1K5M D;  1MQT D;  1VBE 4;  1RUI 4;  2RR1 4;  1COV 4;  1AR6 4;  1RUJ 4;  1Z7S 4;  1H8T D;  1RMU 4;  2R07 4;  2X5I D;  1PVC 4;  2HWC 4;  1NA1 D;  4RHV 4;  2RS1 4;  1BEV 4;  1RUC 4;  4Q4W 4;  4GB3 4;  2R06 4;  1AR9 4;  1NCQ D;  1R08 4;  1AR8 4;  1POV 0;  1EAH 4;  1VBA 4;  1HXS 4;  3JD7 4;  1ASJ 4;  1RUG 4;  1EV1 4;  1RUD 4;  1RUF 4;  2PLV 4;  2HWB 4;  4Q4X 4;  1VBC 4;  1AR7 4;  1R09 4;  4Q4V 4;  1D4M 4;  2R04 4;  1RHI 4;  3J8F 4;  4PDW D;  1RUE 4;  1HRV 4;  2RM2 4;  2RS5 4;  1RUH 4;  1AL2 4;  1RVF 4;  3JBG 4; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...