2X5ID

Crystal structure echovirus 7
Total Genus 4
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
4
sequence length
69
structure length
61
Chain Sequence
MGAQVSTQKTGAHETIIHYTNINYYKDAASNSANRQDFTQDPGKFTEPVKDIMIKTMPALN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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molecule tags Virus
publication title Interaction of Decay-Accelerating Factor with Echovirus 7.
pubmed doi rcsb
molecule keywords VP1
total genus 4
structure length 61
sequence length 69
ec nomenclature
pdb deposition date 2010-02-08

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF02226 Pico_P1A Picornavirus coat protein (VP4)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.80.10 Few Secondary Structures Irregular Rhinovirus 14, subunit 4 Picornavirus coat protein VP4 2x5iD00
2HWB4 2HWC4 1H8TD 1BEV4 2RS34 4RHV4 2RS14 1RHI4 1Z7S4 1PO24 1VBB4 1RUE4 4Q4Y4 2RR14 4Q4X4 1AR84 1EAH4 1AR94 2R074 4Q4W4 2R044 1POV0 1VBC4 1PO14 1RVF4 1ASJ4 1RUI4 4GB34 1OOPD 1K5MD 1RUC4 3JD74 1AR64 1RUF4 1PIV4 2R064 1AL24 1RUH4 3J8F4 1RUD4 1VBA4 1RUJ4 1PVC4 2PLV4 1COV4 1MQTD 1NCQD 1VBD4 1R084 1NA1D 1RMU4 1EV14 2X5ID 3JBG4 1RUG4 1AR74 4Q4V4 1HRV4 1R094 2RM24 1VBE4 4PDWD 1HRI4 2RS54 2RMU4 1HXS4 1D4M4 1VRH4
chains in the Genus database with same CATH superfamily
1H8TD 3AE6A 1VBB4 4YTPA 2WU5A 1AR84 1EAH4 3AE9A 2PYJA 2R044 1VBC4 4YXDA 1ASJ4 3AE4A 4YSXA 1OOPD 1K5MD 1RUC4 3JD74 1XI1A 3AE7A 3AEGA 3CIRA 3AEFA 1AL24 1RUD4 3AEAA 1MQTD 2R7FA 4KX6A 2H88A 4YT0A 1RMU4 3AE8A 3JBG4 1AR74 4Q4V4 1R094 2RMU4 1KFYA 3SFDA 1D4M4 1BEV4 1ZP0A 3P4QA 1PO24 3AEDA 2RR14 4Q4X4 3GQHA 3P4SA 1NEKA 4Q4W4 1POV0 2WDQA 2EX3A 4GB34 4YTMA 3VR9A 2PW9A 2PYLA 1VBA4 1RUJ4 1ZOYA 1NCQD 2H89A 3AECA 1EV14 2PZSA 1HRV4 1VBE4 2WDRA 2HWB4 2HWC4 2RS34 3P4RA 1KF6A 4RHV4 1YQ4A 3GQKA 1RUE4 4Q4Y4 1L0VA 1NENA 1PO14 4YTNA 2WQYA 3FI7A 3VRBA 3P4PA 2WS3A 2PY5A 1AR64 1RUF4 1PIV4 4YSZA 1RUH4 3AE2A 3J8F4 3SUCA 1PVC4 1COV4 3AE1A 1NA1D 2X5ID 2WU2A 3AE3A 3VRAA 3ABVA 3AEEA 4PDWD 2PLV4 2RS14 1RHI4 1Z7S4 2B76A 2WP9A 1AR94 2R074 2ACZA 1RVF4 3VR8A 1RUI4 4YSYA 1YQ3A 3AE5A 2R064 1VBD4 1R084 1VRH4 3SFEA 5C3JA 3AEBA 2FBWA 5C2TA 1XHZA 1RUG4 2RM24 1HRI4 2RS54 2WDVA 1HXS4 1XHXA
chains in the Genus database with same CATH topology
2HWB4 2HWC4 1H8TD 1BEV4 2RS34 4RHV4 2RS14 1RHI4 1Z7S4 1PO24 1VBB4 1RUE4 4Q4Y4 2RR14 4Q4X4 1AR84 1EAH4 1AR94 2R074 4Q4W4 2R044 1POV0 1VBC4 1PO14 1RVF4 1ASJ4 1RUI4 4GB34 1OOPD 1K5MD 1RUC4 3JD74 1AR64 1RUF4 1PIV4 2R064 1AL24 1RUH4 3J8F4 1RUD4 1VBA4 1RUJ4 1PVC4 2PLV4 1COV4 1MQTD 1NCQD 1VBD4 1R084 1NA1D 1RMU4 1EV14 2X5ID 3JBG4 1RUG4 1AR74 4Q4V4 1HRV4 1R094 2RM24 1VBE4 4PDWD 1HRI4 2RS54 2RMU4 1HXS4 1D4M4 1VRH4
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2HWB 4;  2HWC 4;  1H8T D;  1BEV 4;  2RS3 4;  4RHV 4;  2RS1 4;  1RHI 4;  1Z7S 4;  1PO2 4;  1VBB 4;  1RUE 4;  4Q4Y 4;  2RR1 4;  4Q4X 4;  1AR8 4;  1EAH 4;  1AR9 4;  2R07 4;  4Q4W 4;  2R04 4;  1POV 0;  1VBC 4;  1PO1 4;  1RVF 4;  1ASJ 4;  1RUI 4;  4GB3 4;  1OOP D;  1K5M D;  1RUC 4;  3JD7 4;  1AR6 4;  1RUF 4;  1PIV 4;  2R06 4;  1AL2 4;  1RUH 4;  3J8F 4;  1RUD 4;  1VBA 4;  1RUJ 4;  1PVC 4;  2PLV 4;  1COV 4;  1MQT D;  1NCQ D;  1VBD 4;  1R08 4;  1NA1 D;  1RMU 4;  1EV1 4;  2X5I D;  3JBG 4;  1RUG 4;  1AR7 4;  4Q4V 4;  1HRV 4;  1R09 4;  2RM2 4;  1VBE 4;  4PDW D;  1HRI 4;  2RS5 4;  2RMU 4;  1HXS 4;  1D4M 4;  1VRH 4; 
#chains in the Genus database with same CATH topology
 1H8T D;  3AE6 A;  1VBB 4;  4YTP A;  2WU5 A;  1AR8 4;  1EAH 4;  3AE9 A;  2PYJ A;  2R04 4;  1VBC 4;  4YXD A;  1ASJ 4;  3AE4 A;  4YSX A;  1OOP D;  1K5M D;  1RUC 4;  3JD7 4;  1XI1 A;  3AE7 A;  3AEG A;  3CIR A;  3AEF A;  1AL2 4;  1RUD 4;  3AEA A;  1MQT D;  2R7F A;  4KX6 A;  2H88 A;  4YT0 A;  1RMU 4;  3AE8 A;  3JBG 4;  1AR7 4;  4Q4V 4;  1R09 4;  2RMU 4;  1KFY A;  3SFD A;  1D4M 4;  1BEV 4;  1ZP0 A;  3P4Q A;  1PO2 4;  3AED A;  2RR1 4;  4Q4X 4;  3GQH A;  3P4S A;  1NEK A;  4Q4W 4;  1POV 0;  2WDQ A;  2EX3 A;  4GB3 4;  4YTM A;  3VR9 A;  2PW9 A;  2PYL A;  1VBA 4;  1RUJ 4;  1ZOY A;  1NCQ D;  2H89 A;  3AEC A;  1EV1 4;  2PZS A;  1HRV 4;  1VBE 4;  2WDR A;  2HWB 4;  2HWC 4;  2RS3 4;  3P4R A;  1KF6 A;  4RHV 4;  1YQ4 A;  3GQK A;  1RUE 4;  4Q4Y 4;  1L0V A;  1NEN A;  1PO1 4;  4YTN A;  2WQY A;  3FI7 A;  3VRB A;  3P4P A;  2WS3 A;  2PY5 A;  1AR6 4;  1RUF 4;  1PIV 4;  4YSZ A;  1RUH 4;  3AE2 A;  3J8F 4;  3SUC A;  1PVC 4;  1COV 4;  3AE1 A;  1NA1 D;  2X5I D;  2WU2 A;  3AE3 A;  3VRA A;  3ABV A;  3AEE A;  4PDW D;  2PLV 4;  2RS1 4;  1RHI 4;  1Z7S 4;  2B76 A;  2WP9 A;  1AR9 4;  2R07 4;  2ACZ A;  1RVF 4;  3VR8 A;  1RUI 4;  4YSY A;  1YQ3 A;  3AE5 A;  2R06 4;  1VBD 4;  1R08 4;  1VRH 4;  3SFE A;  5C3J A;  3AEB A;  2FBW A;  5C2T A;  1XHZ A;  1RUG 4;  2RM2 4;  1HRI 4;  2RS5 4;  2WDV A;  1HXS 4;  1XHX A; 
#chains in the Genus database with same CATH homology
 2HWB 4;  2HWC 4;  1H8T D;  1BEV 4;  2RS3 4;  4RHV 4;  2RS1 4;  1RHI 4;  1Z7S 4;  1PO2 4;  1VBB 4;  1RUE 4;  4Q4Y 4;  2RR1 4;  4Q4X 4;  1AR8 4;  1EAH 4;  1AR9 4;  2R07 4;  4Q4W 4;  2R04 4;  1POV 0;  1VBC 4;  1PO1 4;  1RVF 4;  1ASJ 4;  1RUI 4;  4GB3 4;  1OOP D;  1K5M D;  1RUC 4;  3JD7 4;  1AR6 4;  1RUF 4;  1PIV 4;  2R06 4;  1AL2 4;  1RUH 4;  3J8F 4;  1RUD 4;  1VBA 4;  1RUJ 4;  1PVC 4;  2PLV 4;  1COV 4;  1MQT D;  1NCQ D;  1VBD 4;  1R08 4;  1NA1 D;  1RMU 4;  1EV1 4;  2X5I D;  3JBG 4;  1RUG 4;  1AR7 4;  4Q4V 4;  1HRV 4;  1R09 4;  2RM2 4;  1VBE 4;  4PDW D;  1HRI 4;  2RS5 4;  2RMU 4;  1HXS 4;  1D4M 4;  1VRH 4; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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