3J8F4

Cryo-em reconstruction of poliovirus-receptor complex
Total Genus 1

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
1
sequence length
68
structure length
68
Chain Sequence
GAQVSSQKVGAHENSNRAYGGSTINYTTINYYRDSASNAASKQDFSQDPSKFTEPIKDVLIKTAPMLN

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
EMPTYS2 (26-29)S1 (4-7)TII1 (13-16)TIV4 (19-22)TIV2 (15-18)TIV3 (18-21)3H1 (36-38)3H2 (51-53)O2 (49-123)TI1 (62-65)Updating...
connected with : NaN
molecule tags Virus/signaling protein
source organism Homo sapiens
publication title Nectin-Like Interactions between Poliovirus and Its Receptor Trigger Conformational Changes Associated with Cell Entry.
pubmed doi rcsb
molecule keywords Capsid protein VP1
total genus 1
structure length 68
sequence length 68
ec nomenclature ec 2.7.7.48: RNA-directed RNA polymerase.
pdb deposition date 2014-10-20

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
4 PF02226 Pico_P1A Picornavirus coat protein (VP4)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.80.10 Few Secondary Structures Irregular Rhinovirus 14, subunit 4 Picornavirus coat protein VP4 3j8f400
1RUG4 2RS54 1EV14 2X5ID 1PIV4 2PLV4 4Q4W4 1PO24 1RMU4 4Q4Y4 1R094 1VBB4 1AL24 2R064 1Z7S4 1VRH4 1VBE4 1HRV4 1PO14 1OOPD 1PVC4 1VBC4 1HRI4 2HWC4 2RM24 2RS34 3JBG4 4Q4V4 1EAH4 1COV4 1K5MD 2RMU4 3JD74 1RHI4 4GB34 4PDWD 4RHV4 1RUE4 1VBD4 3J8F4 1RUD4 1NCQD 1RVF4 1ASJ4 1RUF4 2R044 1AR94 2RR14 2HWB4 1AR74 1POV0 1H8TD 1RUJ4 1RUH4 1NA1D 1AR64 1AR84 1BEV4 1D4M4 1MQTD 1HXS4 1R084 2RS14 1RUI4 4Q4X4 1RUC4 2R074 1VBA4
chains in the Genus database with same CATH superfamily
2RS54 1EV14 2X5ID 3AEEA 5C3JA 2FBWA 3AEBA 4Q4Y4 1VBB4 2R064 1OOPD 3P4RA 3P4QA 4Q4V4 1EAH4 1COV4 3VR9A 1NENA 2WU5A 2WS3A 4GB34 4PDWD 1RUE4 2H89A 1RUD4 3AE2A 1KFYA 1RVF4 1YQ4A 2PYJA 1RUF4 2RR14 2PYLA 1AR74 2R7FA 1RUH4 1NA1D 1AR64 1BEV4 1R084 3AEFA 1PIV4 2PW9A 1RMU4 1R094 1NEKA 1ZP0A 1AL24 1VBE4 1HRV4 1PVC4 2HWC4 1VBC4 3SUCA 3AE3A 3VRAA 3JD74 1RHI4 2ACZA 3AEDA 2WQYA 3J8F4 4YSYA 1ASJ4 5C2TA 3VR8A 1H8TD 1RUJ4 2WDQA 2PY5A 1D4M4 4YTMA 3AE8A 2EX3A 1L0VA 3SFDA 1XHZA 4YT0A 3AE9A 2PLV4 2WU2A 4YSXA 2WP9A 2R074 1ZOYA 1Z7S4 3GQKA 1PO14 3SFEA 1K5MD 3AEGA 4RHV4 3AE5A 4KX6A 1NCQD 2HWB4 1POV0 1XI1A 4YXDA 1AR84 3GQHA 1HXS4 3ABVA 2H88A 3VRBA 3AE6A 3AECA 1RUG4 2PZSA 3FI7A 1YQ3A 3AE7A 1PO24 3P4PA 4Q4W4 3AE1A 4YTNA 1VRH4 4YSZA 2B76A 3JBG4 2RM24 2RS34 1HRI4 2RMU4 4YTPA 1XHXA 1VBD4 3AEAA 2R044 3AE4A 1AR94 1KF6A 2RS14 4Q4X4 2WDRA 1MQTD 3CIRA 1RUI4 1RUC4 2WDVA 3P4SA 1VBA4
chains in the Genus database with same CATH topology
1RUG4 2RS54 1EV14 2X5ID 1PIV4 2PLV4 4Q4W4 1PO24 1RMU4 4Q4Y4 1R094 1VBB4 1AL24 2R064 1Z7S4 1VRH4 1VBE4 1HRV4 1PO14 1OOPD 1PVC4 1VBC4 1HRI4 2HWC4 2RM24 2RS34 3JBG4 4Q4V4 1EAH4 1COV4 1K5MD 2RMU4 3JD74 1RHI4 4GB34 4PDWD 4RHV4 1RUE4 1VBD4 3J8F4 1RUD4 1NCQD 1RVF4 1ASJ4 1RUF4 2R044 1AR94 2RR14 2HWB4 1AR74 1POV0 1H8TD 1RUJ4 1RUH4 1NA1D 1AR64 1AR84 1BEV4 1D4M4 1MQTD 1HXS4 1R084 2RS14 1RUI4 4Q4X4 1RUC4 2R074 1VBA4
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1RUG 4;  2RS5 4;  1EV1 4;  2X5I D;  1PIV 4;  2PLV 4;  4Q4W 4;  1PO2 4;  1RMU 4;  4Q4Y 4;  1R09 4;  1VBB 4;  1AL2 4;  2R06 4;  1Z7S 4;  1VRH 4;  1VBE 4;  1HRV 4;  1PO1 4;  1OOP D;  1PVC 4;  1VBC 4;  1HRI 4;  2HWC 4;  2RM2 4;  2RS3 4;  3JBG 4;  4Q4V 4;  1EAH 4;  1COV 4;  1K5M D;  2RMU 4;  3JD7 4;  1RHI 4;  4GB3 4;  4PDW D;  4RHV 4;  1RUE 4;  1VBD 4;  3J8F 4;  1RUD 4;  1NCQ D;  1RVF 4;  1ASJ 4;  1RUF 4;  2R04 4;  1AR9 4;  2RR1 4;  2HWB 4;  1AR7 4;  1POV 0;  1H8T D;  1RUJ 4;  1RUH 4;  1NA1 D;  1AR6 4;  1AR8 4;  1BEV 4;  1D4M 4;  1MQT D;  1HXS 4;  1R08 4;  2RS1 4;  1RUI 4;  4Q4X 4;  1RUC 4;  2R07 4;  1VBA 4; 
#chains in the Genus database with same CATH topology
 2RS5 4;  1EV1 4;  2X5I D;  3AEE A;  5C3J A;  2FBW A;  3AEB A;  4Q4Y 4;  1VBB 4;  2R06 4;  1OOP D;  3P4R A;  3P4Q A;  4Q4V 4;  1EAH 4;  1COV 4;  3VR9 A;  1NEN A;  2WU5 A;  2WS3 A;  4GB3 4;  4PDW D;  1RUE 4;  2H89 A;  1RUD 4;  3AE2 A;  1KFY A;  1RVF 4;  1YQ4 A;  2PYJ A;  1RUF 4;  2RR1 4;  2PYL A;  1AR7 4;  2R7F A;  1RUH 4;  1NA1 D;  1AR6 4;  1BEV 4;  1R08 4;  3AEF A;  1PIV 4;  2PW9 A;  1RMU 4;  1R09 4;  1NEK A;  1ZP0 A;  1AL2 4;  1VBE 4;  1HRV 4;  1PVC 4;  2HWC 4;  1VBC 4;  3SUC A;  3AE3 A;  3VRA A;  3JD7 4;  1RHI 4;  2ACZ A;  3AED A;  2WQY A;  3J8F 4;  4YSY A;  1ASJ 4;  5C2T A;  3VR8 A;  1H8T D;  1RUJ 4;  2WDQ A;  2PY5 A;  1D4M 4;  4YTM A;  3AE8 A;  2EX3 A;  1L0V A;  3SFD A;  1XHZ A;  4YT0 A;  3AE9 A;  2PLV 4;  2WU2 A;  4YSX A;  2WP9 A;  2R07 4;  1ZOY A;  1Z7S 4;  3GQK A;  1PO1 4;  3SFE A;  1K5M D;  3AEG A;  4RHV 4;  3AE5 A;  4KX6 A;  1NCQ D;  2HWB 4;  1POV 0;  1XI1 A;  4YXD A;  1AR8 4;  3GQH A;  1HXS 4;  3ABV A;  2H88 A;  3VRB A;  3AE6 A;  3AEC A;  1RUG 4;  2PZS A;  3FI7 A;  1YQ3 A;  3AE7 A;  1PO2 4;  3P4P A;  4Q4W 4;  3AE1 A;  4YTN A;  1VRH 4;  4YSZ A;  2B76 A;  3JBG 4;  2RM2 4;  2RS3 4;  1HRI 4;  2RMU 4;  4YTP A;  1XHX A;  1VBD 4;  3AEA A;  2R04 4;  3AE4 A;  1AR9 4;  1KF6 A;  2RS1 4;  4Q4X 4;  2WDR A;  1MQT D;  3CIR A;  1RUI 4;  1RUC 4;  2WDV A;  3P4S A;  1VBA 4; 
#chains in the Genus database with same CATH homology
 1RUG 4;  2RS5 4;  1EV1 4;  2X5I D;  1PIV 4;  2PLV 4;  4Q4W 4;  1PO2 4;  1RMU 4;  4Q4Y 4;  1R09 4;  1VBB 4;  1AL2 4;  2R06 4;  1Z7S 4;  1VRH 4;  1VBE 4;  1HRV 4;  1PO1 4;  1OOP D;  1PVC 4;  1VBC 4;  1HRI 4;  2HWC 4;  2RM2 4;  2RS3 4;  3JBG 4;  4Q4V 4;  1EAH 4;  1COV 4;  1K5M D;  2RMU 4;  3JD7 4;  1RHI 4;  4GB3 4;  4PDW D;  4RHV 4;  1RUE 4;  1VBD 4;  3J8F 4;  1RUD 4;  1NCQ D;  1RVF 4;  1ASJ 4;  1RUF 4;  2R04 4;  1AR9 4;  2RR1 4;  2HWB 4;  1AR7 4;  1POV 0;  1H8T D;  1RUJ 4;  1RUH 4;  1NA1 D;  1AR6 4;  1AR8 4;  1BEV 4;  1D4M 4;  1MQT D;  1HXS 4;  1R08 4;  2RS1 4;  1RUI 4;  4Q4X 4;  1RUC 4;  2R07 4;  1VBA 4; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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