4GB3 | Genus

Total Genus 4

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus	4
sequence length	68
structure length	55
Chain Sequence	GAQVSTQKTGIHYTNINYYKDAASNSANRQDFTQDPGKFTEPVKDIMIKSLPALN

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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

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After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Genus data interpretation

Chord Diagram

molecule tags	Virus
publication title	The Crystal Structure of a Coxsackievirus B3-RD Variant and a Refined 9-Angstrom Cryo-Electron Microscopy Reconstruction of the Virus Complexed with Decay-Accelerating Factor (DAF) Provide a New Footprint of DAF on the Virus Surface. pubmed doi rcsb
molecule keywords	coat protein 1
total genus	4
structure length	55
sequence length	68
ec nomenclature
pdb deposition date	2012-07-26

pfam database annotations

chain	Pfam Accession Code	Pfam Family Identifier	Pfam Description
4	PF02226	Pico_P1A	Picornavirus coat protein (VP4)

Image from the rcsb pdb (www.rcsb.org)

cath code	Class	Architecture	Topology	Homology	Domain
4.10.80.10	Few Secondary Structures	Irregular	Rhinovirus 14, subunit 4	Picornavirus coat protein VP4	4gb3400

1Z7S4 1RUD4 1VRH4 2X5ID 1RUE4 1PO24 2PLV4 4RHV4 2RS34 2RMU4 1EAH4 4Q4W4 1EV14 1HRI4 3JD74 1AL24 1AR94 1VBB4 1HRV4 1COV4 2RM24 1NA1D 1POV0 1VBD4 1K5MD 1OOPD 1RVF4 1AR64 1BEV4 4PDWD 2RR14 3J8F4 1HXS4 1RMU4 1ASJ4 1AR84 1RUG4 1RUF4 1VBC4 2HWB4 1NCQD 2R074 1AR74 1RHI4 1VBE4 1PIV4 4Q4X4 3JBG4 1PO14 1PVC4 4Q4V4 1RUI4 2R064 2R044 1R084 1RUC4 1R094 1VBA4 2RS14 2RS54 4GB34 4Q4Y4 1D4M4 1RUH4 2HWC4 1H8TD 1RUJ4 1MQTD
chains in the Genus database with same CATH superfamily

3AE9A 2X5ID 4YTMA 2PLV4 2WDQA 2RS34 1XI1A 4Q4W4 2PYJA 1KF6A 3GQKA 4YSYA 1COV4 1NA1D 1POV0 1VBD4 2WDRA 1AR64 4PDWD 3AEBA 2R074 1PIV4 3SFDA 1PVC4 1RUI4 2R044 3SFEA 4GB34 1YQ3A 4Q4Y4 1NEKA 2PW9A 1RUJ4 1ZP0A 4YTNA 3VRBA 2RMU4 1KFYA 1EAH4 2WDVA 3CIRA 1EV14 1HRI4 3AEDA 1AR94 3AEEA 2RR14 3J8F4 2HWB4 1RUG4 1VBC4 1NCQD 1YQ4A 1AR74 3P4SA 2WS3A 1VBE4 1XHZA 2FBWA 5C2TA 3GQHA 2R064 3AE5A 1RUC4 1R094 2EX3A 2RS14 4YSZA 4YXDA 5C3JA 2RM24 3AE6A 2ACZA 3AEFA 3SUCA 1AL24 3AEGA 1OOPD 2WU2A 1HXS4 1ASJ4 1AR84 1RUF4 3AE7A 3P4PA 2WU5A 1L0VA 1RHI4 2H89A 3P4RA 4Q4X4 3JBG4 3AE4A 2B76A 2RS54 1VBA4 1XHXA 4YTPA 2H88A 3AECA 1RUH4 2HWC4 1H8TD 2R7FA 3AE8A 4YSXA 1Z7S4 1RUD4 1VRH4 3AEAA 1RUE4 1PO24 3FI7A 4RHV4 2PZSA 2PYLA 3VR9A 3JD74 2PY5A 4YT0A 3AE3A 1VBB4 1HRV4 3VRAA 1NENA 1K5MD 1RVF4 1BEV4 3P4QA 1RMU4 3ABVA 3AE1A 3AE2A 2WQYA 2WP9A 1PO14 4Q4V4 1R084 1ZOYA 4KX6A 1D4M4 1MQTD 3VR8A
chains in the Genus database with same CATH topology

#chains in the Genus database with same CATH superfamily
 1Z7S 4;  1RUD 4;  1VRH 4;  2X5I D;  1RUE 4;  1PO2 4;  2PLV 4;  4RHV 4;  2RS3 4;  2RMU 4;  1EAH 4;  4Q4W 4;  1EV1 4;  1HRI 4;  3JD7 4;  1AL2 4;  1AR9 4;  1VBB 4;  1HRV 4;  1COV 4;  2RM2 4;  1NA1 D;  1POV 0;  1VBD 4;  1K5M D;  1OOP D;  1RVF 4;  1AR6 4;  1BEV 4;  4PDW D;  2RR1 4;  3J8F 4;  1HXS 4;  1RMU 4;  1ASJ 4;  1AR8 4;  1RUG 4;  1RUF 4;  1VBC 4;  2HWB 4;  1NCQ D;  2R07 4;  1AR7 4;  1RHI 4;  1VBE 4;  1PIV 4;  4Q4X 4;  3JBG 4;  1PO1 4;  1PVC 4;  4Q4V 4;  1RUI 4;  2R06 4;  2R04 4;  1R08 4;  1RUC 4;  1R09 4;  1VBA 4;  2RS1 4;  2RS5 4;  4GB3 4;  4Q4Y 4;  1D4M 4;  1RUH 4;  2HWC 4;  1H8T D;  1RUJ 4;  1MQT D; 
#chains in the Genus database with same CATH topology
 3AE9 A;  2X5I D;  4YTM A;  2PLV 4;  2WDQ A;  2RS3 4;  1XI1 A;  4Q4W 4;  2PYJ A;  1KF6 A;  3GQK A;  4YSY A;  1COV 4;  1NA1 D;  1POV 0;  1VBD 4;  2WDR A;  1AR6 4;  4PDW D;  3AEB A;  2R07 4;  1PIV 4;  3SFD A;  1PVC 4;  1RUI 4;  2R04 4;  3SFE A;  4GB3 4;  1YQ3 A;  4Q4Y 4;  1NEK A;  2PW9 A;  1RUJ 4;  1ZP0 A;  4YTN A;  3VRB A;  2RMU 4;  1KFY A;  1EAH 4;  2WDV A;  3CIR A;  1EV1 4;  1HRI 4;  3AED A;  1AR9 4;  3AEE A;  2RR1 4;  3J8F 4;  2HWB 4;  1RUG 4;  1VBC 4;  1NCQ D;  1YQ4 A;  1AR7 4;  3P4S A;  2WS3 A;  1VBE 4;  1XHZ A;  2FBW A;  5C2T A;  3GQH A;  2R06 4;  3AE5 A;  1RUC 4;  1R09 4;  2EX3 A;  2RS1 4;  4YSZ A;  4YXD A;  5C3J A;  2RM2 4;  3AE6 A;  2ACZ A;  3AEF A;  3SUC A;  1AL2 4;  3AEG A;  1OOP D;  2WU2 A;  1HXS 4;  1ASJ 4;  1AR8 4;  1RUF 4;  3AE7 A;  3P4P A;  2WU5 A;  1L0V A;  1RHI 4;  2H89 A;  3P4R A;  4Q4X 4;  3JBG 4;  3AE4 A;  2B76 A;  2RS5 4;  1VBA 4;  1XHX A;  4YTP A;  2H88 A;  3AEC A;  1RUH 4;  2HWC 4;  1H8T D;  2R7F A;  3AE8 A;  4YSX A;  1Z7S 4;  1RUD 4;  1VRH 4;  3AEA A;  1RUE 4;  1PO2 4;  3FI7 A;  4RHV 4;  2PZS A;  2PYL A;  3VR9 A;  3JD7 4;  2PY5 A;  4YT0 A;  3AE3 A;  1VBB 4;  1HRV 4;  3VRA A;  1NEN A;  1K5M D;  1RVF 4;  1BEV 4;  3P4Q A;  1RMU 4;  3ABV A;  3AE1 A;  3AE2 A;  2WQY A;  2WP9 A;  1PO1 4;  4Q4V 4;  1R08 4;  1ZOY A;  4KX6 A;  1D4M 4;  1MQT D;  3VR8 A; 
#chains in the Genus database with same CATH homology
 1Z7S 4;  1RUD 4;  1VRH 4;  2X5I D;  1RUE 4;  1PO2 4;  2PLV 4;  4RHV 4;  2RS3 4;  2RMU 4;  1EAH 4;  4Q4W 4;  1EV1 4;  1HRI 4;  3JD7 4;  1AL2 4;  1AR9 4;  1VBB 4;  1HRV 4;  1COV 4;  2RM2 4;  1NA1 D;  1POV 0;  1VBD 4;  1K5M D;  1OOP D;  1RVF 4;  1AR6 4;  1BEV 4;  4PDW D;  2RR1 4;  3J8F 4;  1HXS 4;  1RMU 4;  1ASJ 4;  1AR8 4;  1RUG 4;  1RUF 4;  1VBC 4;  2HWB 4;  1NCQ D;  2R07 4;  1AR7 4;  1RHI 4;  1VBE 4;  1PIV 4;  4Q4X 4;  3JBG 4;  1PO1 4;  1PVC 4;  4Q4V 4;  1RUI 4;  2R06 4;  2R04 4;  1R08 4;  1RUC 4;  1R09 4;  1VBA 4;  2RS1 4;  2RS5 4;  4GB3 4;  4Q4Y 4;  1D4M 4;  1RUH 4;  2HWC 4;  1H8T D;  1RUJ 4;  1MQT D;

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similar chains in the Genus database (?% sequence similarity)

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similar chains in the pdb database (?% sequence similarity)

#similar chains in the Genus database (?% sequence similarity)
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#similar chains, but unknotted
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#similar chains in the pdb database (?% sequence similarity)
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4GB34

Total Genus

sequence length

structure length

Chain Sequence

Structure visualization

Chord Diagram

connected with : NaN

pfam database annotations