4J1GA

Leanyer orthobunyavirus nucleoprotein-ssrna complex
Total Genus 64
Loading diagram...

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
64
sequence length
228
structure length
228
Chain Sequence
DFIYDDRPAAVSSTFNPEKGYMDFITAYGKNINADNVRIFFLNHKKAKDSLKGSPKVEVDLQFGTLRVKVVNNHNPRNRDNPVADNAITLHRLSGYLAKWCFDEIDHGQIEEAEVKSKVVIPLAEAKGCKWGDGVALYLAFAPGAEMFLKDFEFYPLAIDIQRVVKDGMDITFMRKVLKQRYGTKTADDWMISEVTAIQSAVKVVAKLPWAKAGFTAAAKNFLAKFNI
Loading diagram...

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
{{ tooltip.sname }} connected with {{ tooltip.tname }} : {{qFormat(tooltip.svalue) }}
publication title Structure of the Leanyer orthobunyavirus nucleoprotein-RNA complex reveals unique architecture for RNA encapsidation.
pubmed doi rcsb
molecule tags Viral protein/rna
source organism Leanyer virus
molecule keywords Nucleocapsid
total genus 64
structure length 228
sequence length 228
chains with identical sequence B, C, D
ec nomenclature
pdb deposition date 2013-02-01

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
A PF00952 Bunya_nucleocap Bunyavirus nucleocapsid (N) protein
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
1.20.142.20 Mainly Alpha Up-down Bundle Poly(ADP-ribose) Polymerase; domain 1 Poly(ADP-ribose) Polymerase; domain 1 4j1gA01
3.90.25.50 Alpha Beta Alpha-Beta Complex UDP-galactose 4-epimerase; domain 1 UDP-galactose 4-epimerase; domain 1 4j1gA02
3ZLAA 3ZL9A 4BHHB 4IJSA 4IDXA 4J1JA 4BGPA 4IDUB 4J1GA 4JNGA 4IDUA
chains in the Genus database with same CATH superfamily
2HUNA 1QYCA 1KEPA 4L6SA 4R5WA 1GY8A 1KC3A 1UDCA 4IDXA 1KETA 1E7QA 5U9CA 1K6XA 2C20A 1EQ2A 2B69A 1GS0A 2VUTA 2WMDA 2ZCVA 2QZZA 3RU7A 2WM3A 3LU1A 1FXSA 2QYSA 1I3KA 2X6TA 3RUFA 1SB9A 1T2AA 1WOKA 4L7LA 2GASA 2Q1TA 2PAXA 1A9YA 2GN4A 3ZL9A 3AW9A 2GNAA 4XHUA 1XELA 2C5EA 4WPGA 2R6JA 2RD6A 3E48A 1KC1A 2GN9A 2VRCA 3SXPA 5GY7A 2VRCD 1BWSA 1HZJA 2PAWA 1UDAA 4PJVA 1NAHA 2GN6A 3FHBA 3CE0A 1EK6A 1EFYA 1UK1A 4R6EA 2GN8A 1Z75A 2PK3A 1LRLA 4HHZA 4BL5A 4BHHB 3PAXA 4IJSA 2PZJA 2QW8A 3I5MA 4E5YA 1E7RA 1I3NA 1QRRA 1VL0A 1E7SA 2R2GA 4G5HA 2Z95A 4IDGA 4JNGA 2UV8A 4GV0A 1KEUA 2GGSA 1Z74A 4L7PA 4GV7A 1KVSA 1LRJA 3KO8A 1Z45A 4GLLA 4LW8A 3RUHA 4HHYA 2RCWA 4ZZZA 1I3MA 3C49A 1PAXA 4OQBC 3KJDA 2X86A 1A26A 3ENKA 3I52A 3C1OA 4L7NA 4L7UA 3VVCA 3RUEA 1A9ZA 1NAIA 3EHEA 1N7GA 2CNBA 2JL1A 3SC6A 4ZZYA 4BKPA 3C4HA 1QYDA 1KVQA 4UNDA 2VUSA 4L6ZA 1KEWA 4J1JA 1R66A 1UDBA 4PJTA 5IN5A 3GN7A 1KVTA 2Q1UA 5IN4A 3ZLAA 4ID9A 1RPNA 1UK0A 1BXKA 1U9JA 4WOKA 4UXBA 2C59A 4OPXC 2C54A 4B8WA 1G1AA 1K6IA 4L7RA 1N7HA 3PVZA 2EXXA 2VUUA 1XGKA 3I6IA 4ZZXA 2Q1SA 4L70A 4L7OA 1Z73A 4IDUB 1TI7A 4RV6A 1DB3A 4TVJA 1R6DA 3SLGA 2P5UA 4EJ0A 4GV2A 1GFSA 4J1GA 1I2CA 4IDUA 1KBZA 1RKXA 3KCZA 1I24A 1KVRA 2Z1MA 3E5MA 1I2BA 1SB8A 3RU9A 1LRKA 3ICPA 2VRBA 2BLLA 4BGPA 3DXFA 3L3MA 1N2SA 4GV4A 1EK5A 5A00A 1WVGA 3RUCA 1Z7BA 3I6QA 3RUDA 3VPSA 4OQAC 1BSVA 4B8ZA 2P5YA 3C3XA 4ZRNA 4ZRMA 3RUAA 4PAXA 2HRZA 3W1VA 1K6JA 1E6UA 1KERA 3L3LA 1KVUA 1OC2A 2ZCUA 4TWRA 2UDPA 1I3LA 4LISA 2QX7A 3GJWA 4DQYC 2C5AA
chains in the Genus database with same CATH topology
3VVCA 2GN6A 4IDXA 4J1GA 2GN8A 4IDUA 4BHHB 4IJSA 4J1JA 4BGPA 4G5HA 4IDGA 2UV8A 4JNGA 3ZLAA 4ID9A 2GN4A 3PVZA 3ZL9A 3W1VA 2GNAA 2GN9A 4IDUB
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3ZLA A;  3ZL9 A;  4BHH B;  4IJS A;  4IDX A;  4J1J A;  4BGP A;  4IDU B;  4J1G A;  4JNG A;  4IDU A; 
#chains in the Genus database with same CATH topology
 2HUN A;  1QYC A;  1KEP A;  4L6S A;  4R5W A;  1GY8 A;  1KC3 A;  1UDC A;  4IDX A;  1KET A;  1E7Q A;  5U9C A;  1K6X A;  2C20 A;  1EQ2 A;  2B69 A;  1GS0 A;  2VUT A;  2WMD A;  2ZCV A;  2QZZ A;  3RU7 A;  2WM3 A;  3LU1 A;  1FXS A;  2QYS A;  1I3K A;  2X6T A;  3RUF A;  1SB9 A;  1T2A A;  1WOK A;  4L7L A;  2GAS A;  2Q1T A;  2PAX A;  1A9Y A;  2GN4 A;  3ZL9 A;  3AW9 A;  2GNA A;  4XHU A;  1XEL A;  2C5E A;  4WPG A;  2R6J A;  2RD6 A;  3E48 A;  1KC1 A;  2GN9 A;  2VRC A;  3SXP A;  5GY7 A;  2VRC D;  1BWS A;  1HZJ A;  2PAW A;  1UDA A;  4PJV A;  1NAH A;  2GN6 A;  3FHB A;  3CE0 A;  1EK6 A;  1EFY A;  1UK1 A;  4R6E A;  2GN8 A;  1Z75 A;  2PK3 A;  1LRL A;  4HHZ A;  4BL5 A;  4BHH B;  3PAX A;  4IJS A;  2PZJ A;  2QW8 A;  3I5M A;  4E5Y A;  1E7R A;  1I3N A;  1QRR A;  1VL0 A;  1E7S A;  2R2G A;  4G5H A;  2Z95 A;  4IDG A;  4JNG A;  2UV8 A;  4GV0 A;  1KEU A;  2GGS A;  1Z74 A;  4L7P A;  4GV7 A;  1KVS A;  1LRJ A;  3KO8 A;  1Z45 A;  4GLL A;  4LW8 A;  3RUH A;  4HHY A;  2RCW A;  4ZZZ A;  1I3M A;  3C49 A;  1PAX A;  4OQB C;  3KJD A;  2X86 A;  1A26 A;  3ENK A;  3I52 A;  3C1O A;  4L7N A;  4L7U A;  3VVC A;  3RUE A;  1A9Z A;  1NAI A;  3EHE A;  1N7G A;  2CNB A;  2JL1 A;  3SC6 A;  4ZZY A;  4BKP A;  3C4H A;  1QYD A;  1KVQ A;  4UND A;  2VUS A;  4L6Z A;  1KEW A;  4J1J A;  1R66 A;  1UDB A;  4PJT A;  5IN5 A;  3GN7 A;  1KVT A;  2Q1U A;  5IN4 A;  3ZLA A;  4ID9 A;  1RPN A;  1UK0 A;  1BXK A;  1U9J A;  4WOK A;  4UXB A;  2C59 A;  4OPX C;  2C54 A;  4B8W A;  1G1A A;  1K6I A;  4L7R A;  1N7H A;  3PVZ A;  2EXX A;  2VUU A;  1XGK A;  3I6I A;  4ZZX A;  2Q1S A;  4L70 A;  4L7O A;  1Z73 A;  4IDU B;  1TI7 A;  4RV6 A;  1DB3 A;  4TVJ A;  1R6D A;  3SLG A;  2P5U A;  4EJ0 A;  4GV2 A;  1GFS A;  4J1G A;  1I2C A;  4IDU A;  1KBZ A;  1RKX A;  3KCZ A;  1I24 A;  1KVR A;  2Z1M A;  3E5M A;  1I2B A;  1SB8 A;  3RU9 A;  1LRK A;  3ICP A;  2VRB A;  2BLL A;  4BGP A;  3DXF A;  3L3M A;  1N2S A;  4GV4 A;  1EK5 A;  5A00 A;  1WVG A;  3RUC A;  1Z7B A;  3I6Q A;  3RUD A;  3VPS A;  4OQA C;  1BSV A;  4B8Z A;  2P5Y A;  3C3X A;  4ZRN A;  4ZRM A;  3RUA A;  4PAX A;  2HRZ A;  3W1V A;  1K6J A;  1E6U A;  1KER A;  3L3L A;  1KVU A;  1OC2 A;  2ZCU A;  4TWR A;  2UDP A;  1I3L A;  4LIS A;  2QX7 A;  3GJW A;  4DQY C;  2C5A A; 
#chains in the Genus database with same CATH homology
 3VVC A;  2GN6 A;  4IDX A;  4J1G A;  2GN8 A;  4IDU A;  4BHH B;  4IJS A;  4J1J A;  4BGP A;  4G5H A;  4IDG A;  2UV8 A;  4JNG A;  3ZLA A;  4ID9 A;  2GN4 A;  3PVZ A;  3ZL9 A;  3W1V A;  2GNA A;  2GN9 A;  4IDU B; 
...loading similar chains, please wait...
similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
similar chains in the pdb database (?% sequence similarity)

 
#similar chains in the Genus database (?% sequence similarity)
...loading similar chains, please wait...
#similar chains, but unknotted
...loading similar chains, please wait...
#similar chains in the pdb database (?% sequence similarity)
...loading similar chains, please wait...