4PDWD

A benzonitrile analogue inhibits rhinovirus replication
Total Genus 2

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
2
sequence length
41
structure length
41
Chain Sequence
VINYYKDAASTSSAGQSLSMDPSKFTEPVKDLMLKGAPALN

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
3H1 (35-37)EMPTYUpdating...
connected with : NaN
molecule tags Virus
publication title A novel benzonitrile analogue inhibits rhinovirus replication.
pubmed doi rcsb
molecule keywords Genome polyprotein
total genus 2
structure length 41
sequence length 41
ec nomenclature
pdb deposition date 2014-04-22

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
D PF02226 Pico_P1A Picornavirus coat protein (VP4)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.80.10 Few Secondary Structures Irregular Rhinovirus 14, subunit 4 Picornavirus coat protein VP4 4pdwD00
2R064 1MQTD 1RHI4 1AR84 1ASJ4 1PO14 1RUF4 1HXS4 1VBE4 4Q4V4 2HWC4 1D4M4 1PVC4 1VBD4 1RUC4 1AR94 2RM24 4GB34 4Q4X4 1Z7S4 1K5MD 1OOPD 1RUD4 1VBA4 1R094 2R044 2X5ID 1AR74 2PLV4 2RMU4 3JD74 2R074 3JBG4 1HRI4 1H8TD 2RR14 1VBB4 1RVF4 1BEV4 1RUI4 4PDWD 1RUH4 1VRH4 3J8F4 1NCQD 1EV14 1EAH4 4Q4Y4 1R084 4Q4W4 1AR64 1RUJ4 2RS54 1VBC4 1COV4 1POV0 2RS34 2HWB4 1NA1D 1PIV4 1PO24 1RUE4 2RS14 1AL24 1HRV4 4RHV4 1RMU4 1RUG4
chains in the Genus database with same CATH superfamily
3CIRA 4GB34 3VR9A 1K5MD 3AEAA 5C3JA 1R094 4YSYA 4YTMA 1L0VA 4KX6A 3AEEA 3GQHA 2H89A 1XHXA 2WP9A 1H8TD 2FBWA 1VBB4 1RVF4 1YQ3A 2R7FA 3AE2A 3J8F4 2PYLA 3AE9A 1RUJ4 1VBC4 1COV4 3AE7A 3AE8A 2WDRA 1PIV4 1EAH4 1POV0 1AL24 3AE3A 1RMU4 1RUG4 1MQTD 1NEKA 1AR84 1ASJ4 1RUF4 4YSXA 2PY5A 3SUCA 3VRAA 1D4M4 2H88A 1VBD4 1RUC4 4YTPA 2B76A 1NENA 1OOPD 2ACZA 3AEBA 4YTNA 3AE1A 2WS3A 3VR8A 2R074 3JBG4 1HRI4 2WU2A 1RUI4 3GQKA 1RUH4 5C2TA 3AECA 4Q4Y4 4Q4W4 1AR64 1ZP0A 1NA1D 1KF6A 1RUE4 2RS14 3P4SA 2WQYA 1RHI4 3AE4A 2PZSA 4Q4V4 1ZOYA 2WU5A 2RM24 4Q4X4 3SFDA 2PYJA 4YT0A 1RUD4 2R044 2X5ID 3P4QA 2EX3A 3VRBA 2RMU4 3JD74 1VRH4 1YQ4A 1EV14 1NCQD 2HWB4 3FI7A 1XHZA 1PO24 2WDQA 2PW9A 3AEDA 2R064 3AEGA 1PO14 1HXS4 1VBE4 2HWC4 1PVC4 3AEFA 3SFEA 1AR94 3AE6A 1Z7S4 1VBA4 1AR74 2PLV4 3P4RA 4YXDA 2RR14 1BEV4 4PDWD 1R084 3AE5A 4YSZA 2RS54 1KFYA 2RS34 1XI1A 2WDVA 1HRV4 3P4PA 4RHV4 3ABVA
chains in the Genus database with same CATH topology
2R064 1MQTD 1RHI4 1AR84 1ASJ4 1PO14 1RUF4 1HXS4 1VBE4 4Q4V4 2HWC4 1D4M4 1PVC4 1VBD4 1RUC4 1AR94 2RM24 4GB34 4Q4X4 1Z7S4 1K5MD 1OOPD 1RUD4 1VBA4 1R094 2R044 2X5ID 1AR74 2PLV4 2RMU4 3JD74 2R074 3JBG4 1HRI4 1H8TD 2RR14 1VBB4 1RVF4 1BEV4 1RUI4 4PDWD 1RUH4 1VRH4 3J8F4 1NCQD 1EV14 1EAH4 4Q4Y4 1R084 4Q4W4 1AR64 1RUJ4 2RS54 1VBC4 1COV4 1POV0 2RS34 2HWB4 1NA1D 1PIV4 1PO24 1RUE4 2RS14 1AL24 1HRV4 4RHV4 1RMU4 1RUG4
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 2R06 4;  1MQT D;  1RHI 4;  1AR8 4;  1ASJ 4;  1PO1 4;  1RUF 4;  1HXS 4;  1VBE 4;  4Q4V 4;  2HWC 4;  1D4M 4;  1PVC 4;  1VBD 4;  1RUC 4;  1AR9 4;  2RM2 4;  4GB3 4;  4Q4X 4;  1Z7S 4;  1K5M D;  1OOP D;  1RUD 4;  1VBA 4;  1R09 4;  2R04 4;  2X5I D;  1AR7 4;  2PLV 4;  2RMU 4;  3JD7 4;  2R07 4;  3JBG 4;  1HRI 4;  1H8T D;  2RR1 4;  1VBB 4;  1RVF 4;  1BEV 4;  1RUI 4;  4PDW D;  1RUH 4;  1VRH 4;  3J8F 4;  1NCQ D;  1EV1 4;  1EAH 4;  4Q4Y 4;  1R08 4;  4Q4W 4;  1AR6 4;  1RUJ 4;  2RS5 4;  1VBC 4;  1COV 4;  1POV 0;  2RS3 4;  2HWB 4;  1NA1 D;  1PIV 4;  1PO2 4;  1RUE 4;  2RS1 4;  1AL2 4;  1HRV 4;  4RHV 4;  1RMU 4;  1RUG 4; 
#chains in the Genus database with same CATH topology
 3CIR A;  4GB3 4;  3VR9 A;  1K5M D;  3AEA A;  5C3J A;  1R09 4;  4YSY A;  4YTM A;  1L0V A;  4KX6 A;  3AEE A;  3GQH A;  2H89 A;  1XHX A;  2WP9 A;  1H8T D;  2FBW A;  1VBB 4;  1RVF 4;  1YQ3 A;  2R7F A;  3AE2 A;  3J8F 4;  2PYL A;  3AE9 A;  1RUJ 4;  1VBC 4;  1COV 4;  3AE7 A;  3AE8 A;  2WDR A;  1PIV 4;  1EAH 4;  1POV 0;  1AL2 4;  3AE3 A;  1RMU 4;  1RUG 4;  1MQT D;  1NEK A;  1AR8 4;  1ASJ 4;  1RUF 4;  4YSX A;  2PY5 A;  3SUC A;  3VRA A;  1D4M 4;  2H88 A;  1VBD 4;  1RUC 4;  4YTP A;  2B76 A;  1NEN A;  1OOP D;  2ACZ A;  3AEB A;  4YTN A;  3AE1 A;  2WS3 A;  3VR8 A;  2R07 4;  3JBG 4;  1HRI 4;  2WU2 A;  1RUI 4;  3GQK A;  1RUH 4;  5C2T A;  3AEC A;  4Q4Y 4;  4Q4W 4;  1AR6 4;  1ZP0 A;  1NA1 D;  1KF6 A;  1RUE 4;  2RS1 4;  3P4S A;  2WQY A;  1RHI 4;  3AE4 A;  2PZS A;  4Q4V 4;  1ZOY A;  2WU5 A;  2RM2 4;  4Q4X 4;  3SFD A;  2PYJ A;  4YT0 A;  1RUD 4;  2R04 4;  2X5I D;  3P4Q A;  2EX3 A;  3VRB A;  2RMU 4;  3JD7 4;  1VRH 4;  1YQ4 A;  1EV1 4;  1NCQ D;  2HWB 4;  3FI7 A;  1XHZ A;  1PO2 4;  2WDQ A;  2PW9 A;  3AED A;  2R06 4;  3AEG A;  1PO1 4;  1HXS 4;  1VBE 4;  2HWC 4;  1PVC 4;  3AEF A;  3SFE A;  1AR9 4;  3AE6 A;  1Z7S 4;  1VBA 4;  1AR7 4;  2PLV 4;  3P4R A;  4YXD A;  2RR1 4;  1BEV 4;  4PDW D;  1R08 4;  3AE5 A;  4YSZ A;  2RS5 4;  1KFY A;  2RS3 4;  1XI1 A;  2WDV A;  1HRV 4;  3P4P A;  4RHV 4;  3ABV A; 
#chains in the Genus database with same CATH homology
 2R06 4;  1MQT D;  1RHI 4;  1AR8 4;  1ASJ 4;  1PO1 4;  1RUF 4;  1HXS 4;  1VBE 4;  4Q4V 4;  2HWC 4;  1D4M 4;  1PVC 4;  1VBD 4;  1RUC 4;  1AR9 4;  2RM2 4;  4GB3 4;  4Q4X 4;  1Z7S 4;  1K5M D;  1OOP D;  1RUD 4;  1VBA 4;  1R09 4;  2R04 4;  2X5I D;  1AR7 4;  2PLV 4;  2RMU 4;  3JD7 4;  2R07 4;  3JBG 4;  1HRI 4;  1H8T D;  2RR1 4;  1VBB 4;  1RVF 4;  1BEV 4;  1RUI 4;  4PDW D;  1RUH 4;  1VRH 4;  3J8F 4;  1NCQ D;  1EV1 4;  1EAH 4;  4Q4Y 4;  1R08 4;  4Q4W 4;  1AR6 4;  1RUJ 4;  2RS5 4;  1VBC 4;  1COV 4;  1POV 0;  2RS3 4;  2HWB 4;  1NA1 D;  1PIV 4;  1PO2 4;  1RUE 4;  2RS1 4;  1AL2 4;  1HRV 4;  4RHV 4;  1RMU 4;  1RUG 4; 
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similar chains in the pdb database (?% sequence similarity)

 
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