4Q4W4

High-resolution crystal structure of coxsackievirus a24v
Total Genus 3

The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
3
sequence length
68
structure length
57
Chain Sequence
GAQVSSQKVGAHVNYTTINYYKDSASNAASKLDFSQDPSKFTEPVKDIMIKTAPALN

The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
AH1 (50-55)EMPTYS2 (26-29)S1 (4-7)3H1 (36-38)Updating...
connected with : NaN
molecule tags Virus
publication title A sialic Acid binding site in a human picornavirus.
pubmed doi rcsb
molecule keywords Coxsackievirus capsid protein VP1
total genus 3
structure length 57
sequence length 68
ec nomenclature
pdb deposition date 2014-04-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
4 PF02226 Pico_P1A Picornavirus coat protein (VP4)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.80.10 Few Secondary Structures Irregular Rhinovirus 14, subunit 4 Picornavirus coat protein VP4 4q4w400
3JBG4 1VBC4 4Q4W4 2RS54 1PIV4 1RUD4 1AL24 1RUJ4 4Q4V4 1NA1D 4GB34 2RS14 1H8TD 4Q4X4 2R074 2PLV4 1RUH4 1RVF4 4RHV4 1VBD4 2HWC4 2R064 1NCQD 1D4M4 1EV14 2RM24 1POV0 2RMU4 1HRV4 1K5MD 1RUE4 4PDWD 1COV4 1AR64 1BEV4 1VRH4 1RHI4 2R044 2X5ID 1AR84 1RUI4 1PO14 1MQTD 1RUC4 2HWB4 1R094 1R084 1EAH4 1PO24 2RS34 4Q4Y4 2RR14 1OOPD 1RMU4 1VBB4 1AR94 1Z7S4 3J8F4 1HRI4 1RUG4 1VBE4 1PVC4 3JD74 1AR74 1HXS4 1VBA4 1ASJ4 1RUF4
chains in the Genus database with same CATH superfamily
4Q4V4 3AE1A 1RUD4 1KF6A 4YXDA 4YSZA 3ABVA 2RS14 1XI1A 3AE8A 3GQKA 2FBWA 1NENA 1EV14 1POV0 2RMU4 1HRV4 2WDRA 1KFYA 2H88A 1K5MD 1RHI4 3VR8A 1AR84 4YTPA 3VR9A 2PZSA 1ZP0A 3AE7A 1R094 1R084 1EAH4 2PYLA 1Z7S4 3AE9A 1PVC4 2PW9A 3P4QA 4YT0A 2RS54 1NA1D 1H8TD 4KX6A 3AE4A 1YQ3A 2H89A 4YTNA 2WDQA 3AEAA 3GQHA 3AE2A 1VRH4 2WP9A 1RUI4 3AEEA 3P4SA 2EX3A 3J8F4 1HRI4 3JD74 1XHZA 5C2TA 1AR74 1BEV4 3AE6A 3JBG4 1YQ4A 1VBC4 2WU5A 3AECA 1PIV4 3VRBA 1AL24 1RUJ4 2WU2A 2R074 1VBD4 3AEBA 2HWC4 3AEGA 2R064 2WS3A 2PY5A 2RM24 3AEFA 2B76A 1AR64 2ACZA 2R044 3P4PA 1PO14 1RUC4 2RR14 1VBB4 1AR94 1XHXA 1VBA4 2WQYA 1ASJ4 3AE5A 3VRAA 1ZOYA 4Q4W4 4YSXA 4YTMA 1NEKA 3FI7A 4GB34 3SFEA 4Q4X4 2PLV4 1RUH4 1RVF4 4RHV4 3AEDA 3CIRA 1NCQD 1L0VA 1D4M4 2R7FA 3SFDA 3SUCA 1RUE4 4PDWD 1COV4 3AE3A 2X5ID 2HWB4 3P4RA 1MQTD 2PYJA 4Q4Y4 2RS34 1PO24 4YSYA 5C3JA 1OOPD 1RMU4 2WDVA 1RUG4 1VBE4 1HXS4 1RUF4
chains in the Genus database with same CATH topology
3JBG4 1VBC4 4Q4W4 2RS54 1PIV4 1RUD4 1AL24 1RUJ4 4Q4V4 1NA1D 4GB34 2RS14 1H8TD 4Q4X4 2R074 2PLV4 1RUH4 1RVF4 4RHV4 1VBD4 2HWC4 2R064 1NCQD 1D4M4 1EV14 2RM24 1POV0 2RMU4 1HRV4 1K5MD 1RUE4 4PDWD 1COV4 1AR64 1BEV4 1VRH4 1RHI4 2R044 2X5ID 1AR84 1RUI4 1PO14 1MQTD 1RUC4 2HWB4 1R094 1R084 1EAH4 1PO24 2RS34 4Q4Y4 2RR14 1OOPD 1RMU4 1VBB4 1AR94 1Z7S4 3J8F4 1HRI4 1RUG4 1VBE4 1PVC4 3JD74 1AR74 1HXS4 1VBA4 1ASJ4 1RUF4
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 3JBG 4;  1VBC 4;  4Q4W 4;  2RS5 4;  1PIV 4;  1RUD 4;  1AL2 4;  1RUJ 4;  4Q4V 4;  1NA1 D;  4GB3 4;  2RS1 4;  1H8T D;  4Q4X 4;  2R07 4;  2PLV 4;  1RUH 4;  1RVF 4;  4RHV 4;  1VBD 4;  2HWC 4;  2R06 4;  1NCQ D;  1D4M 4;  1EV1 4;  2RM2 4;  1POV 0;  2RMU 4;  1HRV 4;  1K5M D;  1RUE 4;  4PDW D;  1COV 4;  1AR6 4;  1BEV 4;  1VRH 4;  1RHI 4;  2R04 4;  2X5I D;  1AR8 4;  1RUI 4;  1PO1 4;  1MQT D;  1RUC 4;  2HWB 4;  1R09 4;  1R08 4;  1EAH 4;  1PO2 4;  2RS3 4;  4Q4Y 4;  2RR1 4;  1OOP D;  1RMU 4;  1VBB 4;  1AR9 4;  1Z7S 4;  3J8F 4;  1HRI 4;  1RUG 4;  1VBE 4;  1PVC 4;  3JD7 4;  1AR7 4;  1HXS 4;  1VBA 4;  1ASJ 4;  1RUF 4; 
#chains in the Genus database with same CATH topology
 4Q4V 4;  3AE1 A;  1RUD 4;  1KF6 A;  4YXD A;  4YSZ A;  3ABV A;  2RS1 4;  1XI1 A;  3AE8 A;  3GQK A;  2FBW A;  1NEN A;  1EV1 4;  1POV 0;  2RMU 4;  1HRV 4;  2WDR A;  1KFY A;  2H88 A;  1K5M D;  1RHI 4;  3VR8 A;  1AR8 4;  4YTP A;  3VR9 A;  2PZS A;  1ZP0 A;  3AE7 A;  1R09 4;  1R08 4;  1EAH 4;  2PYL A;  1Z7S 4;  3AE9 A;  1PVC 4;  2PW9 A;  3P4Q A;  4YT0 A;  2RS5 4;  1NA1 D;  1H8T D;  4KX6 A;  3AE4 A;  1YQ3 A;  2H89 A;  4YTN A;  2WDQ A;  3AEA A;  3GQH A;  3AE2 A;  1VRH 4;  2WP9 A;  1RUI 4;  3AEE A;  3P4S A;  2EX3 A;  3J8F 4;  1HRI 4;  3JD7 4;  1XHZ A;  5C2T A;  1AR7 4;  1BEV 4;  3AE6 A;  3JBG 4;  1YQ4 A;  1VBC 4;  2WU5 A;  3AEC A;  1PIV 4;  3VRB A;  1AL2 4;  1RUJ 4;  2WU2 A;  2R07 4;  1VBD 4;  3AEB A;  2HWC 4;  3AEG A;  2R06 4;  2WS3 A;  2PY5 A;  2RM2 4;  3AEF A;  2B76 A;  1AR6 4;  2ACZ A;  2R04 4;  3P4P A;  1PO1 4;  1RUC 4;  2RR1 4;  1VBB 4;  1AR9 4;  1XHX A;  1VBA 4;  2WQY A;  1ASJ 4;  3AE5 A;  3VRA A;  1ZOY A;  4Q4W 4;  4YSX A;  4YTM A;  1NEK A;  3FI7 A;  4GB3 4;  3SFE A;  4Q4X 4;  2PLV 4;  1RUH 4;  1RVF 4;  4RHV 4;  3AED A;  3CIR A;  1NCQ D;  1L0V A;  1D4M 4;  2R7F A;  3SFD A;  3SUC A;  1RUE 4;  4PDW D;  1COV 4;  3AE3 A;  2X5I D;  2HWB 4;  3P4R A;  1MQT D;  2PYJ A;  4Q4Y 4;  2RS3 4;  1PO2 4;  4YSY A;  5C3J A;  1OOP D;  1RMU 4;  2WDV A;  1RUG 4;  1VBE 4;  1HXS 4;  1RUF 4; 
#chains in the Genus database with same CATH homology
 3JBG 4;  1VBC 4;  4Q4W 4;  2RS5 4;  1PIV 4;  1RUD 4;  1AL2 4;  1RUJ 4;  4Q4V 4;  1NA1 D;  4GB3 4;  2RS1 4;  1H8T D;  4Q4X 4;  2R07 4;  2PLV 4;  1RUH 4;  1RVF 4;  4RHV 4;  1VBD 4;  2HWC 4;  2R06 4;  1NCQ D;  1D4M 4;  1EV1 4;  2RM2 4;  1POV 0;  2RMU 4;  1HRV 4;  1K5M D;  1RUE 4;  4PDW D;  1COV 4;  1AR6 4;  1BEV 4;  1VRH 4;  1RHI 4;  2R04 4;  2X5I D;  1AR8 4;  1RUI 4;  1PO1 4;  1MQT D;  1RUC 4;  2HWB 4;  1R09 4;  1R08 4;  1EAH 4;  1PO2 4;  2RS3 4;  4Q4Y 4;  2RR1 4;  1OOP D;  1RMU 4;  1VBB 4;  1AR9 4;  1Z7S 4;  3J8F 4;  1HRI 4;  1RUG 4;  1VBE 4;  1PVC 4;  3JD7 4;  1AR7 4;  1HXS 4;  1VBA 4;  1ASJ 4;  1RUF 4; 
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