4Q4X4

Crystal structure of coxsackievirus a24v soaked with 6'-sialyllactose (6sl)
Total Genus 3
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The genus trace: a function that shows values of genus (vertical axis) for subchains spanned between the first residue, and all other residues (shown on horizontal axis). The number of the latter residue and the genus of a given subchain are shown interactively.

Total Genus
3
sequence length
68
structure length
56
Chain Sequence
GAQVSSQKVGAVNYTTINYYKDSASNAASKLDFSQDPSKFTEPVKDIMIKTAPALN
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The genus matrix. At position (x,y) a genus value for a subchain spanned between x’th and y’th residue is shown. Values of the genus are represented by color, according to the scale given on the right.

Structure visualization

After clicking on a point (x,y) in the genus matrix above, a subchain from x to y is shown in color.

Chord Diagram
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publication title A sialic Acid binding site in a human picornavirus.
pubmed doi rcsb
molecule tags Virus
molecule keywords Coxsackievirus capsid protein VP1
total genus 3
structure length 56
sequence length 68
ec nomenclature
pdb deposition date 2014-04-15

pfam database annotations

chain Pfam Accession Code Pfam Family Identifier Pfam Description
4 PF02226 Pico_P1A Picornavirus coat protein (VP4)
Image from the rcsb pdb (www.rcsb.org)
cath code
ClassArchitectureTopologyHomologyDomain
4.10.80.10 Few Secondary Structures Irregular Rhinovirus 14, subunit 4 Picornavirus coat protein VP4 4q4x400
1VBD4 1K5MD 2R074 4RHV4 4GB34 1AR74 1HRI4 2R064 3JD74 1PIV4 1NCQD 4Q4W4 1AR94 1D4M4 1EAH4 1VBA4 1VBC4 1RUE4 4PDWD 1POV0 1R084 1MQTD 2RMU4 2HWB4 2RR14 4Q4V4 1R094 2X5ID 1RUJ4 2RS34 1NA1D 2HWC4 1AL24 1RUG4 2RS14 1Z7S4 1COV4 1VRH4 2PLV4 3JBG4 1PVC4 1HXS4 2RM24 1AR84 1RUD4 1PO14 1OOPD 1VBB4 2RS54 1RUI4 1RMU4 3J8F4 1EV14 1HRV4 1RHI4 1ASJ4 1RUH4 1VBE4 1BEV4 1AR64 1RUF4 4Q4X4 1H8TD 1RVF4 1PO24 4Q4Y4 2R044 1RUC4
chains in the Genus database with same CATH superfamily
3AEAA 3AEFA 3AE3A 1XI1A 2R064 4YSZA 2H89A 3AECA 3AEEA 1VBC4 5C2TA 1RUE4 4PDWD 1POV0 3AE1A 1NENA 2HWB4 4Q4V4 1R094 3AE8A 1RUG4 2PW9A 2WDVA 2FBWA 1RUD4 3AE5A 1XHZA 1KFYA 1RUH4 4YTNA 3AE7A 1BEV4 4YXDA 4Q4X4 1L0VA 3VR8A 3VR9A 4RHV4 4GB34 3GQKA 3ABVA 3JD74 1NCQD 3SFEA 1MQTD 3AE4A 2X5ID 1NA1D 2HWC4 3AE2A 3P4SA 1ZP0A 1XHXA 3SFDA 2R7FA 1VRH4 2PLV4 2PYLA 2WU2A 4YTMA 1AR84 1PO14 1OOPD 2WQYA 3AE9A 3J8F4 4YSXA 1H8TD 3P4QA 3CIRA 4Q4Y4 2R044 1RUC4 3P4PA 1VBD4 1K5MD 2R074 1AR94 1D4M4 1VBA4 2PZSA 3AE6A 1R084 3AEDA 2RMU4 2RR14 1ZOYA 2RS34 1AL24 2PYJA 4KX6A 2WU5A 1HXS4 1RUI4 3VRBA 1HRV4 1RHI4 1NEKA 3FI7A 3AEBA 2WP9A 1RVF4 2PY5A 2WDQA 3SUCA 4YT0A 2WS3A 4YTPA 1AR74 1HRI4 3VRAA 1PIV4 4Q4W4 4YSYA 1EAH4 1YQ4A 3GQHA 1RUJ4 2EX3A 3AEGA 1KF6A 2RS14 1Z7S4 1COV4 2H88A 3JBG4 1PVC4 3P4RA 2RM24 1VBB4 2RS54 2WDRA 1RMU4 1EV14 2ACZA 1ASJ4 5C3JA 1VBE4 1AR64 1RUF4 2B76A 1PO24 1YQ3A
chains in the Genus database with same CATH topology
1VBD4 1K5MD 2R074 4RHV4 4GB34 1AR74 1HRI4 2R064 3JD74 1PIV4 1NCQD 4Q4W4 1AR94 1D4M4 1EAH4 1VBA4 1VBC4 1RUE4 4PDWD 1POV0 1R084 1MQTD 2RMU4 2HWB4 2RR14 4Q4V4 1R094 2X5ID 1RUJ4 2RS34 1NA1D 2HWC4 1AL24 1RUG4 2RS14 1Z7S4 1COV4 1VRH4 2PLV4 3JBG4 1PVC4 1HXS4 2RM24 1AR84 1RUD4 1PO14 1OOPD 1VBB4 2RS54 1RUI4 1RMU4 3J8F4 1EV14 1HRV4 1RHI4 1ASJ4 1RUH4 1VBE4 1BEV4 1AR64 1RUF4 4Q4X4 1H8TD 1RVF4 1PO24 4Q4Y4 2R044 1RUC4
chains in the Genus database with same CATH homology


 
#chains in the Genus database with same CATH superfamily
 1VBD 4;  1K5M D;  2R07 4;  4RHV 4;  4GB3 4;  1AR7 4;  1HRI 4;  2R06 4;  3JD7 4;  1PIV 4;  1NCQ D;  4Q4W 4;  1AR9 4;  1D4M 4;  1EAH 4;  1VBA 4;  1VBC 4;  1RUE 4;  4PDW D;  1POV 0;  1R08 4;  1MQT D;  2RMU 4;  2HWB 4;  2RR1 4;  4Q4V 4;  1R09 4;  2X5I D;  1RUJ 4;  2RS3 4;  1NA1 D;  2HWC 4;  1AL2 4;  1RUG 4;  2RS1 4;  1Z7S 4;  1COV 4;  1VRH 4;  2PLV 4;  3JBG 4;  1PVC 4;  1HXS 4;  2RM2 4;  1AR8 4;  1RUD 4;  1PO1 4;  1OOP D;  1VBB 4;  2RS5 4;  1RUI 4;  1RMU 4;  3J8F 4;  1EV1 4;  1HRV 4;  1RHI 4;  1ASJ 4;  1RUH 4;  1VBE 4;  1BEV 4;  1AR6 4;  1RUF 4;  4Q4X 4;  1H8T D;  1RVF 4;  1PO2 4;  4Q4Y 4;  2R04 4;  1RUC 4; 
#chains in the Genus database with same CATH topology
 3AEA A;  3AEF A;  3AE3 A;  1XI1 A;  2R06 4;  4YSZ A;  2H89 A;  3AEC A;  3AEE A;  1VBC 4;  5C2T A;  1RUE 4;  4PDW D;  1POV 0;  3AE1 A;  1NEN A;  2HWB 4;  4Q4V 4;  1R09 4;  3AE8 A;  1RUG 4;  2PW9 A;  2WDV A;  2FBW A;  1RUD 4;  3AE5 A;  1XHZ A;  1KFY A;  1RUH 4;  4YTN A;  3AE7 A;  1BEV 4;  4YXD A;  4Q4X 4;  1L0V A;  3VR8 A;  3VR9 A;  4RHV 4;  4GB3 4;  3GQK A;  3ABV A;  3JD7 4;  1NCQ D;  3SFE A;  1MQT D;  3AE4 A;  2X5I D;  1NA1 D;  2HWC 4;  3AE2 A;  3P4S A;  1ZP0 A;  1XHX A;  3SFD A;  2R7F A;  1VRH 4;  2PLV 4;  2PYL A;  2WU2 A;  4YTM A;  1AR8 4;  1PO1 4;  1OOP D;  2WQY A;  3AE9 A;  3J8F 4;  4YSX A;  1H8T D;  3P4Q A;  3CIR A;  4Q4Y 4;  2R04 4;  1RUC 4;  3P4P A;  1VBD 4;  1K5M D;  2R07 4;  1AR9 4;  1D4M 4;  1VBA 4;  2PZS A;  3AE6 A;  1R08 4;  3AED A;  2RMU 4;  2RR1 4;  1ZOY A;  2RS3 4;  1AL2 4;  2PYJ A;  4KX6 A;  2WU5 A;  1HXS 4;  1RUI 4;  3VRB A;  1HRV 4;  1RHI 4;  1NEK A;  3FI7 A;  3AEB A;  2WP9 A;  1RVF 4;  2PY5 A;  2WDQ A;  3SUC A;  4YT0 A;  2WS3 A;  4YTP A;  1AR7 4;  1HRI 4;  3VRA A;  1PIV 4;  4Q4W 4;  4YSY A;  1EAH 4;  1YQ4 A;  3GQH A;  1RUJ 4;  2EX3 A;  3AEG A;  1KF6 A;  2RS1 4;  1Z7S 4;  1COV 4;  2H88 A;  3JBG 4;  1PVC 4;  3P4R A;  2RM2 4;  1VBB 4;  2RS5 4;  2WDR A;  1RMU 4;  1EV1 4;  2ACZ A;  1ASJ 4;  5C3J A;  1VBE 4;  1AR6 4;  1RUF 4;  2B76 A;  1PO2 4;  1YQ3 A; 
#chains in the Genus database with same CATH homology
 1VBD 4;  1K5M D;  2R07 4;  4RHV 4;  4GB3 4;  1AR7 4;  1HRI 4;  2R06 4;  3JD7 4;  1PIV 4;  1NCQ D;  4Q4W 4;  1AR9 4;  1D4M 4;  1EAH 4;  1VBA 4;  1VBC 4;  1RUE 4;  4PDW D;  1POV 0;  1R08 4;  1MQT D;  2RMU 4;  2HWB 4;  2RR1 4;  4Q4V 4;  1R09 4;  2X5I D;  1RUJ 4;  2RS3 4;  1NA1 D;  2HWC 4;  1AL2 4;  1RUG 4;  2RS1 4;  1Z7S 4;  1COV 4;  1VRH 4;  2PLV 4;  3JBG 4;  1PVC 4;  1HXS 4;  2RM2 4;  1AR8 4;  1RUD 4;  1PO1 4;  1OOP D;  1VBB 4;  2RS5 4;  1RUI 4;  1RMU 4;  3J8F 4;  1EV1 4;  1HRV 4;  1RHI 4;  1ASJ 4;  1RUH 4;  1VBE 4;  1BEV 4;  1AR6 4;  1RUF 4;  4Q4X 4;  1H8T D;  1RVF 4;  1PO2 4;  4Q4Y 4;  2R04 4;  1RUC 4; 
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similar chains in the Genus database (?% sequence similarity)
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similar chains in the pdb database (?% sequence similarity)

 
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#similar chains, but unknotted
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